Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021295
         (731 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|...   106   4e-24
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi...    35   0.014
SPBC1539.03c |||argininosuccinate lyase|Schizosaccharomyces pomb...    27   3.6  
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac...    27   3.6  
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5...    26   4.8  
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    26   6.4  
SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomy...    26   6.4  
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ...    26   6.4  
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    26   6.4  

>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
           Mts4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score =  106 bits (254), Expect = 4e-24
 Identities = 47/83 (56%), Positives = 66/83 (79%), Gaps = 1/83 (1%)
 Frame = +1

Query: 10  VDSARQNLSATFVNAFVNAGFGRDKLVTTDDGN-KWMYKNKDHGMLSAAASLGMIHLWDV 186
           V SA+QNL+ TFVNA VNAG+  D+L+  DD    W+YKNK+ G++SA AS+G++ LW+V
Sbjct: 362 VYSAKQNLANTFVNALVNAGYSNDRLILVDDEKTSWIYKNKESGLISATASIGLLQLWNV 421

Query: 187 DGGLTPIDKYLYTADEHIKAGAL 255
           D GL+ +DKYLY+++E+ KAGAL
Sbjct: 422 DMGLSLLDKYLYSSEENTKAGAL 444



 Score = 93.1 bits (221), Expect = 4e-20
 Identities = 42/84 (50%), Positives = 59/84 (70%)
 Frame = +3

Query: 255 LALGLVNCGVRNECDPALALLSDYVLHSSSNLRIGSVLGLGIAYAGTQREDVLSHLLPVL 434
           L +G+ N  VRNE DPA+A+LS+Y+   S  LR  ++LGLG+AY+G  RED+L  L P++
Sbjct: 445 LGIGVTNVAVRNEADPAMAILSEYLETGSVKLRASAILGLGLAYSGANREDLLDMLSPIV 504

Query: 435 NDTTAPAEICALAAISCGLIAVGS 506
            DT  P ++  LAA+S GLI VG+
Sbjct: 505 TDTDCPMQLSCLAALSLGLIFVGT 528



 Score = 48.4 bits (110), Expect = 1e-06
 Identities = 22/74 (29%), Positives = 40/74 (54%)
 Frame = +2

Query: 509 NGDVSCAIIQRLIDDNKDLHSSTYARFLHLGLGLCFLSCKERTEATMAALEVLPEPQQSL 688
           NGDV+  I+Q L++  +   +  + RF+ LGL L F   ++  +AT+  L+ +       
Sbjct: 530 NGDVASTILQTLMEREESAQNDQWGRFMALGLALLFNGKQDLADATVETLKAIEGKIARQ 589

Query: 689 CQTTLSMCAYAGNG 730
            +  + +C+YAG G
Sbjct: 590 AEILVDICSYAGTG 603


>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
           Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 965

 Score = 34.7 bits (76), Expect = 0.014
 Identities = 20/66 (30%), Positives = 30/66 (45%)
 Frame = +1

Query: 34  SATFVNAFVNAGFGRDKLVTTDDGNKWMYKNKDHGMLSAAASLGMIHLWDVDGGLTPIDK 213
           + TF NAF+N G   D      D   W+ K  +    +A A+LG+IH    +  +  +  
Sbjct: 350 AVTFANAFMNFGTSSDSFFR--DNLSWLSKANNWSKFTATAALGVIHRGYYNQAMNILRP 407

Query: 214 YLYTAD 231
           YL   D
Sbjct: 408 YLPEED 413


>SPBC1539.03c |||argininosuccinate lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 460

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
 Frame = +3

Query: 318 SDYVLHSSSNLRIGSVLGLGIA---YAGTQRED 407
           SD  +H+++  R+G ++G GIA   + G  R D
Sbjct: 83  SDEDIHTANERRLGEIIGTGIAGKLHTGRSRND 115


>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
           Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -1

Query: 239 MCSSAVYRYLSIGVRPPSTSHK*I-IPRDAAAESIP*SLFLYIHLFPSSVVTS 84
           +C    Y Y +  VR  S   + +  P     ES+P + + Y+ +FPS+ ++S
Sbjct: 435 VCPPEEYTYSTDNVRTDSLDLQSLPTPTLEQLESVPFNRYGYVRIFPSTTLSS 487


>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
           Taf72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 643

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 130 DHGMLSAAASLGMIHLWDVDGG 195
           D   +++A S G+IHLWD+  G
Sbjct: 516 DGHTMASADSEGLIHLWDIGTG 537


>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -1

Query: 119 YIHLFPSSVVTS-LSRPNPAFTKAFTNVADRFCLA 18
           YIHL  +  + + LSR   AFT  FT + D   LA
Sbjct: 865 YIHLVSNYYLNARLSRQCRAFTNGFTQIIDPHWLA 899


>SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +2

Query: 617 LSCKERTEATMAALEVLPEPQQSLCQ 694
           +SC+    A MAA  + P P +++C+
Sbjct: 343 MSCQATNSAWMAATSLPPTPSEAVCE 368


>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 774

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/50 (22%), Positives = 25/50 (50%)
 Frame = +3

Query: 30  PVSYICERLCECWVWPRQTCHNR*WEQMDVQK*GSWYALSGRVPWYDSLV 179
           P +Y  ++  E W+  +Q   +  +E +D+   G+WY    +  W+  ++
Sbjct: 599 PSTYEPDKRGEGWIKVKQDYDDE-FESLDLVPIGAWYGNGRKAGWFSPIL 647


>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = +1

Query: 316 SPIMFCIPVPISGSEVF 366
           +P++FC  V ISG+E++
Sbjct: 144 TPLLFCATVQISGNEIY 160


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,010,785
Number of Sequences: 5004
Number of extensions: 62652
Number of successful extensions: 164
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)