Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021295
(731 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1276 - 28907726-28907842,28908012-28908062,28908146-289082... 115 3e-26
02_01_0356 + 2563773-2563898,2564031-2564131,2564375-2564498,256... 115 4e-26
09_02_0460 + 9567656-9567766,9567849-9567949,9568527-9568647,956... 113 1e-25
01_03_0219 - 13897138-13897525,13898798-13899062,13899359-13899455 38 0.011
04_04_1094 - 30832987-30833316,30833530-30834273,30834484-308347... 33 0.23
08_01_0783 + 7585326-7585477,7586420-7586589,7586687-7586801,758... 32 0.54
04_01_0125 - 1317328-1318049,1318061-1319035,1320994-1321143,132... 30 2.2
12_02_1054 - 25721220-25721582,25723163-25723727,25724162-257244... 29 3.8
06_03_0782 + 24537212-24537490 29 3.8
04_03_0812 - 19922208-19922357,19922448-19922564,19922681-199227... 29 5.0
05_03_0653 + 16617121-16617359,16618892-16618955,16619455-166194... 28 6.6
04_03_0765 + 19376949-19377156,19377637-19377833,19378259-193784... 28 8.8
03_01_0456 - 3495537-3496205,3496304-3496364,3496447-3496829,349... 28 8.8
>06_03_1276 -
28907726-28907842,28908012-28908062,28908146-28908254,
28908345-28908430,28908537-28908650,28908731-28908790,
28909088-28909303,28909401-28909514,28910632-28910853,
28910946-28911050,28911136-28911276,28911368-28911472,
28911538-28911645,28911753-28911911,28912060-28912140,
28912219-28912330,28912433-28912515,28912631-28912669,
28913061-28913126,28913601-28913643,28913969-28914036,
28914264-28914323,28914409-28914529,28915167-28915267,
28915354-28915494
Length = 873
Score = 115 bits (277), Expect = 3e-26
Identities = 56/89 (62%), Positives = 68/89 (76%), Gaps = 7/89 (7%)
Frame = +1
Query: 10 VDSARQNLSATFVNAFVNAGFGRDKLVTTDDGNK-------WMYKNKDHGMLSAAASLGM 168
+DSARQNL+ATFVNAFVNAGFG+DKL+TT + W++KNK+HG SAAASLGM
Sbjct: 372 LDSARQNLAATFVNAFVNAGFGQDKLMTTPSDSSSSGSSGNWLFKNKEHGKASAAASLGM 431
Query: 169 IHLWDVDGGLTPIDKYLYTADEHIKAGAL 255
I LWD D GL +DKYL++ D H+ AGAL
Sbjct: 432 ILLWDSDSGLAQLDKYLHSNDIHVVAGAL 460
Score = 98.7 bits (235), Expect = 4e-21
Identities = 43/84 (51%), Positives = 62/84 (73%)
Frame = +3
Query: 255 LALGLVNCGVRNECDPALALLSDYVLHSSSNLRIGSVLGLGIAYAGTQREDVLSHLLPVL 434
L +G+V+CGV+++CDPA AL+S+Y S +RIG++LGLGIAYAG+Q+E+V +L L
Sbjct: 461 LGIGIVSCGVKSDCDPAFALISEYFSRDESIIRIGAILGLGIAYAGSQKEEVRENLTAFL 520
Query: 435 NDTTAPAEICALAAISCGLIAVGS 506
D+ P E+ +AIS GL+ VGS
Sbjct: 521 TDSQVPLEVLVFSAISLGLVFVGS 544
Score = 41.1 bits (92), Expect = 9e-04
Identities = 24/74 (32%), Positives = 37/74 (50%)
Frame = +2
Query: 509 NGDVSCAIIQRLIDDNKDLHSSTYARFLHLGLGLCFLSCKERTEATMAALEVLPEPQQSL 688
N +V+ II L++ ++ + R L + LGL +L +E EAT + E ++
Sbjct: 546 NEEVAQTIICVLMERSEPELAEPIMRLLPVALGLLYLGKQESVEATAEVSKTFDEKIRNY 605
Query: 689 CQTTLSMCAYAGNG 730
C TL AYAG G
Sbjct: 606 CDVTLMSLAYAGTG 619
Score = 34.7 bits (76), Expect = 0.077
Identities = 24/90 (26%), Positives = 40/90 (44%)
Frame = +3
Query: 237 HQGWCPLALGLVNCGVRNECDPALALLSDYVLHSSSNLRIGSVLGLGIAYAGTQREDVLS 416
HQG L + L+ + A+ L + + N+R L LG+ + +V+
Sbjct: 641 HQGPAVLGISLIAMAEELGAEMAVRSLERLLQYGEQNIRRAVPLALGLLCISNPKVNVMD 700
Query: 417 HLLPVLNDTTAPAEICALAAISCGLIAVGS 506
+ + +D A AE+ A IS GLI G+
Sbjct: 701 TMSRLSHD--ADAEVSMAAIISLGLIGAGT 728
>02_01_0356 +
2563773-2563898,2564031-2564131,2564375-2564498,
2564592-2564651,2564762-2564829,2565520-2565562,
2566026-2566091,2566237-2566275,2566375-2566457,
2566654-2566765,2566840-2566923,2567026-2567184,
2567268-2567372,2567451-2567555,2567661-2567801,
2567920-2568024,2568111-2568335,2568762-2568875,
2568963-2569178,2569674-2569733,2569827-2569940,
2570047-2570132,2570211-2570319,2570408-2570586,
2570673-2570741,2570792-2571005
Length = 968
Score = 115 bits (276), Expect = 4e-26
Identities = 55/89 (61%), Positives = 67/89 (75%), Gaps = 7/89 (7%)
Frame = +1
Query: 10 VDSARQNLSATFVNAFVNAGFGRDKLVTTDDGNK-------WMYKNKDHGMLSAAASLGM 168
+DSARQNL+ATFVNAFVNAGFG+DKL+T + W++KNK+HG SAAASLGM
Sbjct: 368 LDSARQNLAATFVNAFVNAGFGQDKLMTAPSDSSSSGASGNWLFKNKEHGKASAAASLGM 427
Query: 169 IHLWDVDGGLTPIDKYLYTADEHIKAGAL 255
I LWD D GL +DKYL++ D H+ AGAL
Sbjct: 428 ILLWDTDSGLAQLDKYLHSNDAHVVAGAL 456
Score = 96.7 bits (230), Expect = 2e-20
Identities = 43/85 (50%), Positives = 65/85 (76%), Gaps = 1/85 (1%)
Frame = +3
Query: 255 LALGLVNCGVRNECDPALALLSDYVLHSSSNLRIGSVLGLGIAYAGTQREDVLSHLLPVL 434
L +G+V CGV+N+CDPALA+L +Y+ +N+RIG++LGLGIAYAG+Q+E++ S+L VL
Sbjct: 457 LGIGIVTCGVKNDCDPALAILMEYINKDDTNIRIGAILGLGIAYAGSQKEELKSYLSTVL 516
Query: 435 NDT-TAPAEICALAAISCGLIAVGS 506
D+ + E+ +AI+ GL+ VGS
Sbjct: 517 GDSEKSTLEVLIFSAIALGLVFVGS 541
Score = 41.1 bits (92), Expect = 9e-04
Identities = 23/74 (31%), Positives = 37/74 (50%)
Frame = +2
Query: 509 NGDVSCAIIQRLIDDNKDLHSSTYARFLHLGLGLCFLSCKERTEATMAALEVLPEPQQSL 688
N +++ +II L++ ++ + R L + LGL +L +E EAT + E +
Sbjct: 543 NEEIAQSIIFALMERSEAELAEPIIRLLPVALGLLYLGKQESVEATAEVSKTFDEKIRKY 602
Query: 689 CQTTLSMCAYAGNG 730
C TL AYAG G
Sbjct: 603 CDVTLMSLAYAGTG 616
Score = 33.5 bits (73), Expect = 0.18
Identities = 24/90 (26%), Positives = 39/90 (43%)
Frame = +3
Query: 237 HQGWCPLALGLVNCGVRNECDPALALLSDYVLHSSSNLRIGSVLGLGIAYAGTQREDVLS 416
HQG L + L+ + A+ L + + N+R L LGI + +V+
Sbjct: 638 HQGPAVLGIALIAMAEELGAEMAVRSLERLLQYGEQNIRRAVPLALGILCISNPKVNVMD 697
Query: 417 HLLPVLNDTTAPAEICALAAISCGLIAVGS 506
L + +D A A++ A IS G I G+
Sbjct: 698 TLSRLSHD--ADADVSMAAIISLGFIGAGT 725
>09_02_0460 +
9567656-9567766,9567849-9567949,9568527-9568647,
9568733-9568792,9569022-9569089,9569469-9569535,
9569586-9569666,9570152-9570217,9570372-9570410,
9570527-9570609,9570712-9570823,9570902-9570982,
9571132-9571290,9571397-9571504,9571570-9571674,
9571765-9571905,9572007-9572147,9572205-9572426,
9573617-9573730,9573830-9574045,9574373-9574432,
9574513-9574626,9574735-9574820,9574904-9575012,
9575099-9575277,9575357-9575429
Length = 938
Score = 113 bits (273), Expect = 1e-25
Identities = 55/89 (61%), Positives = 67/89 (75%), Gaps = 7/89 (7%)
Frame = +1
Query: 10 VDSARQNLSATFVNAFVNAGFGRDKLVT-------TDDGNKWMYKNKDHGMLSAAASLGM 168
+DSARQNL+ATFVNAFVNAGFG+DKL+T + W++KNK+HG SAAASLGM
Sbjct: 397 LDSARQNLAATFVNAFVNAGFGQDKLMTAPSDSSGSGSSGNWLFKNKEHGKASAAASLGM 456
Query: 169 IHLWDVDGGLTPIDKYLYTADEHIKAGAL 255
I LWD D GL +DKYL++ D H+ AGAL
Sbjct: 457 ILLWDSDSGLAQLDKYLHSNDIHVVAGAL 485
Score = 87.4 bits (207), Expect = 1e-17
Identities = 45/96 (46%), Positives = 65/96 (67%), Gaps = 12/96 (12%)
Frame = +3
Query: 255 LALGLVNCGVRNECDPALALLSDYVLHSSSNLRIGSVLGLGIAYAGTQREDV----LSHL 422
L +G+V+CGV+++CDPA AL+S+Y S +RIG++LGLGIAYAG+Q+E+V L
Sbjct: 486 LGIGIVSCGVKSDCDPAFALISEYFSRDESIIRIGAILGLGIAYAGSQKEEVKILALGLA 545
Query: 423 LPV--------LNDTTAPAEICALAAISCGLIAVGS 506
+P+ L+D+ P E+ AAIS GL+ VGS
Sbjct: 546 IPLVRENLTAFLSDSQVPLEVLVFAAISLGLVFVGS 581
Score = 41.1 bits (92), Expect = 9e-04
Identities = 23/74 (31%), Positives = 37/74 (50%)
Frame = +2
Query: 509 NGDVSCAIIQRLIDDNKDLHSSTYARFLHLGLGLCFLSCKERTEATMAALEVLPEPQQSL 688
N +++ II L++ ++ + R L + LGL +L +E EAT + E ++
Sbjct: 583 NEEIAQTIICVLMEHSEPELAEPIIRLLPVALGLLYLGKQESVEATAEVSKTFDEKIRNY 642
Query: 689 CQTTLSMCAYAGNG 730
C TL AYAG G
Sbjct: 643 CDVTLMSLAYAGTG 656
Score = 35.9 bits (79), Expect = 0.033
Identities = 24/90 (26%), Positives = 41/90 (45%)
Frame = +3
Query: 237 HQGWCPLALGLVNCGVRNECDPALALLSDYVLHSSSNLRIGSVLGLGIAYAGTQREDVLS 416
HQG L + L++ + A+ L + + N+R L LG+ + +V+
Sbjct: 678 HQGPAVLGISLISMAEELGAEMAVRSLERLLQYGEQNIRRAVPLALGLLCISNPKVNVMD 737
Query: 417 HLLPVLNDTTAPAEICALAAISCGLIAVGS 506
+ + +D A AE+ A IS GLI G+
Sbjct: 738 TMSRLSHD--ADAEVSMAAIISLGLIGAGT 765
>01_03_0219 - 13897138-13897525,13898798-13899062,13899359-13899455
Length = 249
Score = 37.5 bits (83), Expect = 0.011
Identities = 19/37 (51%), Positives = 23/37 (62%)
Frame = -1
Query: 518 HRHSGSNGDEPAGDGGECADLGRGGRVVEHGKQVGQH 408
H H G EP +GG +DLGRG RVV H ++V QH
Sbjct: 99 HPHHGGEEGEPLEEGGAESDLGRGQRVV-HLQRVHQH 134
>04_04_1094 -
30832987-30833316,30833530-30834273,30834484-30834742,
30834821-30835041,30835127-30835375,30835460-30835595,
30835864-30836207,30836589-30836758,30837080-30837185,
30837267-30837330,30838462-30838616
Length = 925
Score = 33.1 bits (72), Expect = 0.23
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Frame = +3
Query: 240 QGWCPLALGLVNCGVRNECDPALALLSDYVLHSSSN-LRIGSVLGLGIAYAGTQREDVLS 416
+G ALGL++ N + L + + ++S+ ++ G+ LGLG+A GT E++
Sbjct: 376 EGGALYALGLIHA---NHGEGIKQFLRESLRNTSAEVIQHGACLGLGLAALGTADEEIYE 432
Query: 417 HLLPVLNDTTAPAEICALAAISCGLIAVGS 506
+ VL +A A A I GL+ VG+
Sbjct: 433 DIKNVLYTDSAVAG--EAAGIGMGLLMVGT 460
>08_01_0783 +
7585326-7585477,7586420-7586589,7586687-7586801,
7586887-7587055,7587185-7587319,7587409-7587728,
7587992-7588127,7588224-7588472,7588567-7588787,
7588906-7589164,7589264-7589971,7590095-7590424
Length = 987
Score = 31.9 bits (69), Expect = 0.54
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Frame = +3
Query: 240 QGWCPLALGLVNCGVRNECDPALALLSDYVLHSSSNL-RIGSVLGLGIAYAGTQREDVLS 416
+G ALGL++ N + L + + ++SS + + G+ LGLG+A GT E++
Sbjct: 450 EGGALYALGLIHA---NHGEGIKQFLRESLRNTSSEVVQHGACLGLGLAALGTADEEIFE 506
Query: 417 HLLPVLNDTTAPAEICALAAISCGLIAVGS 506
+ +L +A A A I GL+ G+
Sbjct: 507 DVKNILYTDSAVAG--EAAGIGMGLLMAGT 534
>04_01_0125 -
1317328-1318049,1318061-1319035,1320994-1321143,
1322242-1322546,1323447-1323565
Length = 756
Score = 29.9 bits (64), Expect = 2.2
Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 1/112 (0%)
Frame = +3
Query: 129 GSWYALSGRVPWYDSLVGCRRWSNAYRQIPVYRRRAHQGW-CPLALGLVNCGVRNECDPA 305
G ++ SGR+ W D V C RW + RR A G ++L L G+ D
Sbjct: 56 GPEFSSSGRLDW-DEAVDCCRWEGVTCSVAGRRREAAAGGRRVVSLSLPGVGIAGAVD-- 112
Query: 306 LALLSDYVLHSSSNLRIGSVLGLGIAYAGTQREDVLSHLLPVLNDTTAPAEI 461
A+L+ + +L + +++ R D++ + VLN+ TA E+
Sbjct: 113 AAVLAPFTALEKLDLSGNQI----TSFSAANRSDMV--VGAVLNNLTALTEL 158
>12_02_1054 -
25721220-25721582,25723163-25723727,25724162-25724476,
25724492-25724772
Length = 507
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 124 NKDHGMLSAAASLGMIHLWDVDGGLTPIDKYLYTADE 234
N D GM A L IH +D GG + + + + AD+
Sbjct: 245 NDDDGMFYAITYLAAIHAYDFSGGPSAVRQTIVLADQ 281
>06_03_0782 + 24537212-24537490
Length = 92
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +3
Query: 315 LSDYVLHSSSNLRIGSVLGLGIAYAGTQREDVLSHLLPVLNDTTAPAEIC 464
+S VLH L +G LGLG+ E+V+ ++L V+ A +C
Sbjct: 33 VSTAVLHRRRRLGLGLGLGLGLGLGVRVYENVVFYVLWVVESVVVLANLC 82
>04_03_0812 -
19922208-19922357,19922448-19922564,19922681-19922752,
19922864-19923993,19924939-19925008,19925125-19925199
Length = 537
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/45 (28%), Positives = 19/45 (42%)
Frame = +3
Query: 105 EQMDVQK*GSWYALSGRVPWYDSLVGCRRWSNAYRQIPVYRRRAH 239
E D ++ G W A P + GC W +Q P Y+ + H
Sbjct: 283 EDWDDEEDGEWEAPKIDNPKCEEAPGCGEWKRPMKQNPAYKGKWH 327
>05_03_0653 + 16617121-16617359,16618892-16618955,16619455-16619485,
16619577-16619848,16620528-16620633,16620715-16620872,
16621527-16621714,16621786-16621855,16622814-16622984,
16624363-16624838,16625625-16625871,16626158-16626490,
16627329-16627412,16627751-16627843,16627966-16628025,
16628582-16628680,16628830-16628970,16629207-16629287,
16629895-16629966,16631160-16631231,16632083-16632176,
16632257-16632339,16632455-16632532,16632914-16632970,
16633055-16633132,16633236-16633357,16633463-16633623,
16634419-16634495,16634570-16634683,16634857-16634958,
16635368-16635436,16635437-16635577,16635936-16636109,
16636934-16637063,16637137-16637276,16637369-16637446,
16637813-16637911,16638408-16638803
Length = 1749
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = +3
Query: 270 VNCGVRNECDPAL---ALLSDYVLHSSSNLRIGSVLGLGIAYAGTQRED 407
VN GV N A+ L S+ + + N+ G+ + LG+ YAG++ D
Sbjct: 1206 VNFGVSNTSQEAMDSDELDSEALFQAYVNIVTGACIALGLKYAGSRNSD 1254
>04_03_0765 +
19376949-19377156,19377637-19377833,19378259-19378448,
19380263-19380654,19380689-19380802,19381159-19381593,
19381936-19382038,19382080-19382177,19383217-19383552
Length = 690
Score = 27.9 bits (59), Expect = 8.8
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = -1
Query: 539 AE*LHKIHRHSGSNGDEPAGDGGECADLGRG---GRVVEHGKQVGQHI 405
AE + + R G +GD+ DGGEC R G GKQV + +
Sbjct: 578 AEHIIGVARAKGVSGDDGEADGGECEAARRASVLGEDTAGGKQVEESL 625
>03_01_0456 -
3495537-3496205,3496304-3496364,3496447-3496829,
3496924-3497613
Length = 600
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -1
Query: 518 HRHSGSNGDEPAGDGGECADLGRGG 444
H H G GD G+ ADLG GG
Sbjct: 515 HHHHGGGGDARFVSYGDMADLGGGG 539
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,403,647
Number of Sequences: 37544
Number of extensions: 489583
Number of successful extensions: 1632
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1625
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -