BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= NV021295 (731 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_20852| Best HMM Match : PC_rep (HMM E-Value=1.8e-13) 136 2e-32 SB_58997| Best HMM Match : PC_rep (HMM E-Value=4e-16) 38 0.008 SB_39416| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.008 SB_57664| Best HMM Match : PC_rep (HMM E-Value=3.5e-14) 32 0.55 SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13) 30 2.2 SB_50965| Best HMM Match : HEAT (HMM E-Value=1.2e-12) 29 5.1 SB_56560| Best HMM Match : GBP_C (HMM E-Value=0.065) 28 6.8 >SB_20852| Best HMM Match : PC_rep (HMM E-Value=1.8e-13) Length = 638 Score = 136 bits (328), Expect = 2e-32 Identities = 61/82 (74%), Positives = 75/82 (91%) Frame = +1 Query: 10 VDSARQNLSATFVNAFVNAGFGRDKLVTTDDGNKWMYKNKDHGMLSAAASLGMIHLWDVD 189 +DSARQNL+++FVNAFVNA FG DKL+T +DGNKW+YKNK+HGM+S ASLG+I LWDVD Sbjct: 364 LDSARQNLASSFVNAFVNAAFGVDKLLT-EDGNKWIYKNKEHGMMSTTASLGLILLWDVD 422 Query: 190 GGLTPIDKYLYTADEHIKAGAL 255 GGLT IDKYLY++D++IKAGAL Sbjct: 423 GGLTQIDKYLYSSDDYIKAGAL 444 Score = 73.3 bits (172), Expect = 2e-13 Identities = 37/64 (57%), Positives = 47/64 (73%) Frame = +3 Query: 255 LALGLVNCGVRNECDPALALLSDYVLHSSSNLRIGSVLGLGIAYAGTQREDVLSHLLPVL 434 LA G+VN GVRNECDPA ALLSDYVLHSS+ +R+GSV+G G+ GT +V S +L + Sbjct: 445 LACGIVNSGVRNECDPARALLSDYVLHSSNIMRLGSVVG-GMVAIGTCNGEVTSTILQAM 503 Query: 435 NDTT 446 + T Sbjct: 504 MEQT 507 Score = 66.1 bits (154), Expect = 3e-11 Identities = 30/74 (40%), Positives = 47/74 (63%) Frame = +2 Query: 509 NGDVSCAIIQRLIDDNKDLHSSTYARFLHLGLGLCFLSCKERTEATMAALEVLPEPQQSL 688 NG+V+ I+Q +++ + +Y+R+L LGLGL FL +E EAT+ AL+V+P+P Sbjct: 492 NGEVTSTILQAMMEQTEVQVKDSYSRYLALGLGLTFLGKQEAAEATLEALKVVPQPLGRW 551 Query: 689 CQTTLSMCAYAGNG 730 + +CAYAG G Sbjct: 552 ASILVEICAYAGTG 565 >SB_58997| Best HMM Match : PC_rep (HMM E-Value=4e-16) Length = 181 Score = 37.9 bits (84), Expect = 0.008 Identities = 26/79 (32%), Positives = 41/79 (51%) Frame = +3 Query: 258 ALGLVNCGVRNECDPALALLSDYVLHSSSNLRIGSVLGLGIAYAGTQREDVLSHLLPVLN 437 ALG + +C ++LLS+ + ++R G+ L LGIA AGT ++ ++ L P+ N Sbjct: 62 ALGFILFRTPEQCPSVVSLLSESY---NPHVRYGAALALGIACAGTGLKEAINLLEPMTN 118 Query: 438 DTTAPAEICALAAISCGLI 494 D AL A + LI Sbjct: 119 DPVNYVRQGALVASALILI 137 >SB_39416| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 738 Score = 37.9 bits (84), Expect = 0.008 Identities = 26/79 (32%), Positives = 41/79 (51%) Frame = +3 Query: 258 ALGLVNCGVRNECDPALALLSDYVLHSSSNLRIGSVLGLGIAYAGTQREDVLSHLLPVLN 437 ALG + +C ++LLS+ + ++R G+ L LGIA AGT ++ ++ L P+ N Sbjct: 334 ALGFILFRTPEQCPSVVSLLSESY---NPHVRYGAALALGIACAGTGLKEAINLLEPMTN 390 Query: 438 DTTAPAEICALAAISCGLI 494 D AL A + LI Sbjct: 391 DPVNYVRQGALVASALILI 409 Score = 31.9 bits (69), Expect = 0.55 Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 1/84 (1%) Frame = +3 Query: 258 ALGLVNCGVRNECDPALALLSDYVLHSSSNLRIGSVLGLGIAYAGTQREDVLSHL-LPVL 434 ALGL++ V + + LL ++ +R G LGLG+A GT ++DV L + Sbjct: 180 ALGLIH--VNHGGNITEYLLQQLKEATTDMVRHGGCLGLGLASMGTAKQDVYEQLKFNLY 237 Query: 435 NDTTAPAEICALAAISCGLIAVGS 506 D E LA GL+ +GS Sbjct: 238 QDDAITGEAAGLA---MGLVMLGS 258 >SB_57664| Best HMM Match : PC_rep (HMM E-Value=3.5e-14) Length = 119 Score = 31.9 bits (69), Expect = 0.55 Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 1/84 (1%) Frame = +3 Query: 258 ALGLVNCGVRNECDPALALLSDYVLHSSSNLRIGSVLGLGIAYAGTQREDVLSHL-LPVL 434 ALGL++ V + + LL ++ +R G LGLG+A GT ++DV L + Sbjct: 32 ALGLIH--VNHGGNITEYLLQQLKEATTDMVRHGGCLGLGLASMGTAKQDVYEQLKFNLY 89 Query: 435 NDTTAPAEICALAAISCGLIAVGS 506 D E LA GL+ +GS Sbjct: 90 QDDAITGEAAGLA---MGLVMLGS 110 >SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13) Length = 1819 Score = 29.9 bits (64), Expect = 2.2 Identities = 16/50 (32%), Positives = 22/50 (44%) Frame = +1 Query: 40 TFVNAFVNAGFGRDKLVTTDDGNKWMYKNKDHGMLSAAASLGMIHLWDVD 189 TFV F G L++ DDG K K +++ +LG I D D Sbjct: 861 TFVGTFTAVGTNTGCLLSFDDGQKKFVKPSSSSAVTSVPNLGTILFSDAD 910 >SB_50965| Best HMM Match : HEAT (HMM E-Value=1.2e-12) Length = 492 Score = 28.7 bits (61), Expect = 5.1 Identities = 17/36 (47%), Positives = 21/36 (58%) Frame = +3 Query: 336 SSSNLRIGSVLGLGIAYAGTQREDVLSHLLPVLNDT 443 S NLR S GL + A R+D+L LLP+L DT Sbjct: 277 SDWNLRKCSAAGLDVL-ANVFRDDLLPVLLPILKDT 311 >SB_56560| Best HMM Match : GBP_C (HMM E-Value=0.065) Length = 557 Score = 28.3 bits (60), Expect = 6.8 Identities = 16/41 (39%), Positives = 20/41 (48%) Frame = -2 Query: 403 SRCVPAYAIPRPKTLPILRLELECRT*SESRAKAGSHSFLT 281 SR PA +P P LP++R LE T S G H +T Sbjct: 294 SRDTPAAQVPSPAGLPLIRQTLEVIT--TSNGTFGEHPLVT 332 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 24,064,746 Number of Sequences: 59808 Number of extensions: 535253 Number of successful extensions: 1335 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 1216 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1328 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 1962001171 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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