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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021295
         (731 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20852| Best HMM Match : PC_rep (HMM E-Value=1.8e-13)               136   2e-32
SB_58997| Best HMM Match : PC_rep (HMM E-Value=4e-16)                  38   0.008
SB_39416| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.008
SB_57664| Best HMM Match : PC_rep (HMM E-Value=3.5e-14)                32   0.55 
SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13)                   30   2.2  
SB_50965| Best HMM Match : HEAT (HMM E-Value=1.2e-12)                  29   5.1  
SB_56560| Best HMM Match : GBP_C (HMM E-Value=0.065)                   28   6.8  

>SB_20852| Best HMM Match : PC_rep (HMM E-Value=1.8e-13)
          Length = 638

 Score =  136 bits (328), Expect = 2e-32
 Identities = 61/82 (74%), Positives = 75/82 (91%)
 Frame = +1

Query: 10  VDSARQNLSATFVNAFVNAGFGRDKLVTTDDGNKWMYKNKDHGMLSAAASLGMIHLWDVD 189
           +DSARQNL+++FVNAFVNA FG DKL+T +DGNKW+YKNK+HGM+S  ASLG+I LWDVD
Sbjct: 364 LDSARQNLASSFVNAFVNAAFGVDKLLT-EDGNKWIYKNKEHGMMSTTASLGLILLWDVD 422

Query: 190 GGLTPIDKYLYTADEHIKAGAL 255
           GGLT IDKYLY++D++IKAGAL
Sbjct: 423 GGLTQIDKYLYSSDDYIKAGAL 444



 Score = 73.3 bits (172), Expect = 2e-13
 Identities = 37/64 (57%), Positives = 47/64 (73%)
 Frame = +3

Query: 255 LALGLVNCGVRNECDPALALLSDYVLHSSSNLRIGSVLGLGIAYAGTQREDVLSHLLPVL 434
           LA G+VN GVRNECDPA ALLSDYVLHSS+ +R+GSV+G G+   GT   +V S +L  +
Sbjct: 445 LACGIVNSGVRNECDPARALLSDYVLHSSNIMRLGSVVG-GMVAIGTCNGEVTSTILQAM 503

Query: 435 NDTT 446
            + T
Sbjct: 504 MEQT 507



 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 30/74 (40%), Positives = 47/74 (63%)
 Frame = +2

Query: 509 NGDVSCAIIQRLIDDNKDLHSSTYARFLHLGLGLCFLSCKERTEATMAALEVLPEPQQSL 688
           NG+V+  I+Q +++  +     +Y+R+L LGLGL FL  +E  EAT+ AL+V+P+P    
Sbjct: 492 NGEVTSTILQAMMEQTEVQVKDSYSRYLALGLGLTFLGKQEAAEATLEALKVVPQPLGRW 551

Query: 689 CQTTLSMCAYAGNG 730
               + +CAYAG G
Sbjct: 552 ASILVEICAYAGTG 565


>SB_58997| Best HMM Match : PC_rep (HMM E-Value=4e-16)
          Length = 181

 Score = 37.9 bits (84), Expect = 0.008
 Identities = 26/79 (32%), Positives = 41/79 (51%)
 Frame = +3

Query: 258 ALGLVNCGVRNECDPALALLSDYVLHSSSNLRIGSVLGLGIAYAGTQREDVLSHLLPVLN 437
           ALG +      +C   ++LLS+     + ++R G+ L LGIA AGT  ++ ++ L P+ N
Sbjct: 62  ALGFILFRTPEQCPSVVSLLSESY---NPHVRYGAALALGIACAGTGLKEAINLLEPMTN 118

Query: 438 DTTAPAEICALAAISCGLI 494
           D        AL A +  LI
Sbjct: 119 DPVNYVRQGALVASALILI 137


>SB_39416| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 738

 Score = 37.9 bits (84), Expect = 0.008
 Identities = 26/79 (32%), Positives = 41/79 (51%)
 Frame = +3

Query: 258 ALGLVNCGVRNECDPALALLSDYVLHSSSNLRIGSVLGLGIAYAGTQREDVLSHLLPVLN 437
           ALG +      +C   ++LLS+     + ++R G+ L LGIA AGT  ++ ++ L P+ N
Sbjct: 334 ALGFILFRTPEQCPSVVSLLSESY---NPHVRYGAALALGIACAGTGLKEAINLLEPMTN 390

Query: 438 DTTAPAEICALAAISCGLI 494
           D        AL A +  LI
Sbjct: 391 DPVNYVRQGALVASALILI 409



 Score = 31.9 bits (69), Expect = 0.55
 Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
 Frame = +3

Query: 258 ALGLVNCGVRNECDPALALLSDYVLHSSSNLRIGSVLGLGIAYAGTQREDVLSHL-LPVL 434
           ALGL++  V +  +    LL      ++  +R G  LGLG+A  GT ++DV   L   + 
Sbjct: 180 ALGLIH--VNHGGNITEYLLQQLKEATTDMVRHGGCLGLGLASMGTAKQDVYEQLKFNLY 237

Query: 435 NDTTAPAEICALAAISCGLIAVGS 506
            D     E   LA    GL+ +GS
Sbjct: 238 QDDAITGEAAGLA---MGLVMLGS 258


>SB_57664| Best HMM Match : PC_rep (HMM E-Value=3.5e-14)
          Length = 119

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
 Frame = +3

Query: 258 ALGLVNCGVRNECDPALALLSDYVLHSSSNLRIGSVLGLGIAYAGTQREDVLSHL-LPVL 434
           ALGL++  V +  +    LL      ++  +R G  LGLG+A  GT ++DV   L   + 
Sbjct: 32  ALGLIH--VNHGGNITEYLLQQLKEATTDMVRHGGCLGLGLASMGTAKQDVYEQLKFNLY 89

Query: 435 NDTTAPAEICALAAISCGLIAVGS 506
            D     E   LA    GL+ +GS
Sbjct: 90  QDDAITGEAAGLA---MGLVMLGS 110


>SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13)
          Length = 1819

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = +1

Query: 40   TFVNAFVNAGFGRDKLVTTDDGNKWMYKNKDHGMLSAAASLGMIHLWDVD 189
            TFV  F   G     L++ DDG K   K      +++  +LG I   D D
Sbjct: 861  TFVGTFTAVGTNTGCLLSFDDGQKKFVKPSSSSAVTSVPNLGTILFSDAD 910


>SB_50965| Best HMM Match : HEAT (HMM E-Value=1.2e-12)
          Length = 492

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 17/36 (47%), Positives = 21/36 (58%)
 Frame = +3

Query: 336 SSSNLRIGSVLGLGIAYAGTQREDVLSHLLPVLNDT 443
           S  NLR  S  GL +  A   R+D+L  LLP+L DT
Sbjct: 277 SDWNLRKCSAAGLDVL-ANVFRDDLLPVLLPILKDT 311


>SB_56560| Best HMM Match : GBP_C (HMM E-Value=0.065)
          Length = 557

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = -2

Query: 403 SRCVPAYAIPRPKTLPILRLELECRT*SESRAKAGSHSFLT 281
           SR  PA  +P P  LP++R  LE  T   S    G H  +T
Sbjct: 294 SRDTPAAQVPSPAGLPLIRQTLEVIT--TSNGTFGEHPLVT 332


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,064,746
Number of Sequences: 59808
Number of extensions: 535253
Number of successful extensions: 1335
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1328
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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