Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021295
(731 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039052-4|AAF98630.1| 981|Caenorhabditis elegans Proteasome re... 103 2e-22
U39851-6|AAM81116.1| 965|Caenorhabditis elegans Proteasome regu... 34 0.12
Z50741-1|CAA90609.1| 395|Caenorhabditis elegans Hypothetical pr... 29 2.6
U41274-2|AAD50512.1| 347|Caenorhabditis elegans Intracellular l... 29 2.6
AF039046-11|AAD34651.3| 388|Caenorhabditis elegans Hypothetical... 29 4.5
AL132876-17|CAC48140.1| 934|Caenorhabditis elegans Hypothetical... 28 5.9
AF067215-5|AAC17010.3| 441|Caenorhabditis elegans T box family ... 28 7.8
>AF039052-4|AAF98630.1| 981|Caenorhabditis elegans Proteasome
regulatory particle,non-atpase-like protein 1 protein.
Length = 981
Score = 103 bits (246), Expect = 2e-22
Identities = 45/82 (54%), Positives = 61/82 (74%), Gaps = 1/82 (1%)
Frame = +1
Query: 13 DSARQNLSATFVNAFVNAGFGRDKLVT-TDDGNKWMYKNKDHGMLSAAASLGMIHLWDVD 189
DS R NL+A VN FVN GFG DK++ T++ ++W YKNK++GML+AAAS G+I WD+D
Sbjct: 352 DSTRMNLAAALVNGFVNCGFGVDKMMAETEEASRWFYKNKEYGMLTAAASQGLIWRWDID 411
Query: 190 GGLTPIDKYLYTADEHIKAGAL 255
GL D++LY D++IKAG L
Sbjct: 412 TGLAQCDRFLYINDDYIKAGTL 433
Score = 72.5 bits (170), Expect = 3e-13
Identities = 45/109 (41%), Positives = 68/109 (62%), Gaps = 13/109 (11%)
Frame = +3
Query: 255 LALGLVNCGVRNECDPALALLSDYVLHSSSNLRIGSVLGLGIAYAGTQRE--------DV 410
LA+G+++ G+++ CDPA ALL D+V S +R+GS+LGLG+AYA ++RE V
Sbjct: 434 LAIGIISSGIQDACDPASALLLDHVQSDRSIMRVGSILGLGLAYANSKRETVTKNEERGV 493
Query: 411 LSHLLPVLND--TTAPAEICALAAISCGLIAVG---S*MAMYLVQSFSD 542
+ L VL+D +A E+ LA +S GLI VG + AM ++Q+ D
Sbjct: 494 IFELKKVLSDQKPSAIPEVKGLAGLSLGLILVGTADAEAAMEMLQALMD 542
Score = 50.8 bits (116), Expect = 1e-06
Identities = 22/74 (29%), Positives = 44/74 (59%)
Frame = +2
Query: 509 NGDVSCAIIQRLIDDNKDLHSSTYARFLHLGLGLCFLSCKERTEATMAALEVLPEPQQSL 688
+ + + ++Q L+D ++ + RFL LG+ L FL +++++ + +L LP+P ++
Sbjct: 529 DAEAAMEMLQALMDKSETELTDPNMRFLALGIALIFLQTQDKSDVFVESLRSLPDPFGAM 588
Query: 689 CQTTLSMCAYAGNG 730
T + +CAYAG G
Sbjct: 589 VSTLVEVCAYAGTG 602
>U39851-6|AAM81116.1| 965|Caenorhabditis elegans Proteasome
regulatory particle,non-atpase-like protein 2, isoform b
protein.
Length = 965
Score = 33.9 bits (74), Expect = 0.12
Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Frame = +3
Query: 246 WCPLALGLVNCGVRNECDPALALLSDYVLHSSSNLRIGSVLGLGIAYAGTQREDVLSHLL 425
+ + +G V + C +A+L++ H + ++R G+ + LGIA AGT + ++ +
Sbjct: 596 YATIGIGFVLSKDPSTCLSYVAMLTE---HFNGHVRYGAAMALGIACAGTGNMEAIALIE 652
Query: 426 PVLNDT---TAPAEICALAAISC 485
P+++D + +LA I C
Sbjct: 653 PMISDKEGFVRKGALLSLALIMC 675
>Z50741-1|CAA90609.1| 395|Caenorhabditis elegans Hypothetical
protein F55G7.1 protein.
Length = 395
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -2
Query: 193 HRLHPTSESYQGTRPLRAYHDP-YFCTSICSHHRL 92
HR PT YQG RP+ AY P + S C+ +L
Sbjct: 256 HRTIPTQACYQGPRPIPAYKIPCHGSQSSCNLQKL 290
>U41274-2|AAD50512.1| 347|Caenorhabditis elegans Intracellular
lectin protein 2 protein.
Length = 347
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +1
Query: 118 YKNKDHGMLSAAASLGM-IHLWDVDGG-LTPIDKYLYTADEHIKAGALW 258
Y ++H ++ G I W++ G ++ TADE KAGALW
Sbjct: 44 YYKREHSLIKPYTGSGADIPNWNIIGSTFVSSNQIRLTADEQSKAGALW 92
>AF039046-11|AAD34651.3| 388|Caenorhabditis elegans Hypothetical
protein R09B5.12 protein.
Length = 388
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +1
Query: 1 EHPVDSARQNLSATFVNAFVNAGFGRDKLVTTDDGNKWMYKNKDHGMLSAAASLGMI 171
+H D +L +TFV+ N+ F D L T + K + KN+ +LS A + +I
Sbjct: 177 KHGFDGLVIDLYSTFVDVIANSEFRLDALETIEHIGKVIRKNELTAILSFPAVVNVI 233
>AL132876-17|CAC48140.1| 934|Caenorhabditis elegans Hypothetical
protein Y105E8A.21 protein.
Length = 934
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 112 WMYKNKDHGMLSAAASLGMIHLWDVDGG 195
W Y N L+A +LG I +W++DGG
Sbjct: 625 WSYHNGG-ATLAALTALGAIAIWNLDGG 651
>AF067215-5|AAC17010.3| 441|Caenorhabditis elegans T box family
protein 32 protein.
Length = 441
Score = 27.9 bits (59), Expect = 7.8
Identities = 17/62 (27%), Positives = 32/62 (51%)
Frame = -3
Query: 282 HRSSRDLKPEGTSLDVLVGGIQVFVDRR*TTVYIPQVNHTKGRGR*EHTMILIFVHPFVP 103
H++S ++ E T V + G Q T VY P++ +K + E ++L +H +VP
Sbjct: 88 HKNS-EIPMEDTEEIVHLDGYQTGARWMKTGVYFPKIGISKEQPDKERCLLLESLHAYVP 146
Query: 102 II 97
++
Sbjct: 147 VL 148
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,251,644
Number of Sequences: 27780
Number of extensions: 380068
Number of successful extensions: 1164
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1163
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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