Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021295
         (731 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    26   0.32 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    26   0.42 
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   6.8  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   6.8  

>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 26.2 bits (55), Expect = 0.32
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +3

Query: 357 GSVLGLGIAYAGTQREDVLSHLLPVLNDTTAPAEICAL 470
           G ++GLG +  G  R D+LS +  +L    A    C L
Sbjct: 268 GGLVGLGFSLNGPDRIDILSQINGILGSLVAITGGCFL 305


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
            75 protein.
          Length = 900

 Score = 25.8 bits (54), Expect = 0.42
 Identities = 21/58 (36%), Positives = 27/58 (46%)
 Frame = -3

Query: 729  PLPAYAHMDSVVWQSDCCGSGSTSSAAIVASVRSLQLKKHSPSPKCRNLA*VDECKSL 556
            P PA +   ++V  S C  +       I  S + L L K SPSP  R L  V  CK+L
Sbjct: 842  PRPASSTAATLVL-SGCPSNMMELQVDIADSQQPLNLSKKSPSPSPRPL--VGPCKAL 896


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = +1

Query: 205 IDKYLYTADEHIKAGALW 258
           +D+Y +T D H+    +W
Sbjct: 73  VDEYSHTVDFHVMLKLMW 90


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +3

Query: 213 IPVYRRRAHQGWCPLALGLVNCGVRN 290
           + V R R H   C L L  +N  +RN
Sbjct: 343 LQVCRSRRHSDSCCLCLDSMNAVIRN 368


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,151
Number of Sequences: 438
Number of extensions: 4362
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)