Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021294
         (745 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac...    27   3.7  
SPAC806.04c |||DUF89 family protein|Schizosaccharomyces pombe|ch...    26   6.5  
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe...    25   8.6  
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb...    25   8.6  

>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 72  RLQQAAHGKQKHDLSKWKYS 131
           RLQ+AA GK++ D  +W Y+
Sbjct: 55  RLQEAAGGKKRKDRVEWMYA 74


>SPAC806.04c |||DUF89 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 440

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 336 PRISPFCSTRGLFAASMTDCGARSCSS 256
           PR +PF  T G  A ++  C  R+C +
Sbjct: 378 PRTTPFGKTLGPIANAINACALRTCKA 404


>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 871

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +3

Query: 3   QLRSFPPAEALNGENKLNRSERVRLQQAAHGKQK 104
           +LR+ PP+  ++ EN+ N +  + L++ A  K K
Sbjct: 832 ELRTRPPSLLIDDENEANLTSSIGLKKNAKQKNK 865


>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 929

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
 Frame = +3

Query: 51  LNRSERVRLQ-QAAHGKQKHDLSKWK 125
           L +S + RL+ QAA+ + K+DL KWK
Sbjct: 327 LAKSIQDRLERQAAYEQTKNDLEKWK 352


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,872,836
Number of Sequences: 5004
Number of extensions: 25657
Number of successful extensions: 89
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)