Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021294
         (745 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_1143 + 30709825-30709926,30710105-30710260,30710356-307104...    31   1.3  
01_06_1106 + 34563368-34563679                                         29   3.9  
12_01_1059 - 10934937-10935446,10938224-10938271,10938383-109386...    28   9.0  
02_02_0713 + 13209130-13209691,13209731-13209850,13209896-132103...    28   9.0  
01_06_0322 + 28472680-28473053,28474434-28474470,28474578-284748...    28   9.0  

>03_05_1143 + 30709825-30709926,30710105-30710260,30710356-30710439,
            30710769-30710882,30711019-30711111,30711888-30711977,
            30712157-30712227,30712300-30712374,30712481-30712568,
            30712748-30712806,30712893-30712956,30713030-30713095,
            30713283-30713435,30713522-30713626,30713739-30713974,
            30714104-30714173,30714286-30714339,30714501-30714557,
            30714662-30714741,30716056-30717919
          Length = 1226

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 21/75 (28%), Positives = 32/75 (42%)
 Frame = +3

Query: 6    LRSFPPAEALNGENKLNRSERVRLQQAAHGKQKHDLSKWKYSELRDTINTSCDIELLEAC 185
            LRS      L  E K +R + + +Q+      +HD    K + L   +   C + LLEA 
Sbjct: 1047 LRSEEERTKLLSELKKSREQLIMVQKEIKSMNRHDDIDCKIASLESEVENCC-LTLLEAD 1105

Query: 186  RHEFHRRLKVYHAWK 230
              +F R   +   WK
Sbjct: 1106 VEKFVRDNTLTEIWK 1120


>01_06_1106 + 34563368-34563679
          Length = 103

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = +3

Query: 18  PPAEALNGENKLNRSERVRLQQA--AHGKQKHDL 113
           PPAE  +G N+  R    RLQ A   HG  KH L
Sbjct: 46  PPAELRHGPNRCRRPPWRRLQPARLRHGPDKHHL 79


>12_01_1059 -
           10934937-10935446,10938224-10938271,10938383-10938619,
           10938711-10938747,10941018-10941286
          Length = 366

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +3

Query: 87  AHGKQKHDLSKWKYSELRDTINTSCDIELL-EACRH 191
           +HGKQ  +L K KY  L       CD+EL  E  RH
Sbjct: 207 SHGKQLWELCKEKYEPLWLKGGKHCDLELFPEYLRH 242


>02_02_0713 +
           13209130-13209691,13209731-13209850,13209896-13210314,
           13210485-13210750,13211381-13211620,13212084-13212876
          Length = 799

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
 Frame = +3

Query: 21  PAEALNGENKLNRSERV-RLQQAAHGKQKHDLSKWKYSELRDTINTSCDIELLEACRHEF 197
           PAE  +G++   ++ +  ++     G+  +D  +    +   TI+T+ +  +  +    F
Sbjct: 374 PAEYSSGQSGATQNGQPGKIYAEFPGEGNNDAQEPLLEDASKTIHTAQEARVAGSEEAVF 433

Query: 198 HRRLKVYHAWKAKNARKSTCSSRSGRR 278
             + K     KAK+AR  T   R GRR
Sbjct: 434 RTKAKEGVEGKAKDARSITSGDRMGRR 460


>01_06_0322 +
           28472680-28473053,28474434-28474470,28474578-28474814,
           28474891-28474938,28475263-28475661
          Length = 364

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +3

Query: 87  AHGKQKHDLSKWKYSELRDTINTSCDIEL 173
           +HGKQ  +L K KYS L  T    C++EL
Sbjct: 242 SHGKQLWELCKVKYSPLWLTGGGHCNLEL 270


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,722,849
Number of Sequences: 37544
Number of extensions: 204260
Number of successful extensions: 774
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)