Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021294
(745 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30332| Best HMM Match : RVT_1 (HMM E-Value=2.7e-34) 100 2e-21
SB_31407| Best HMM Match : TolA (HMM E-Value=2.5) 31 0.99
SB_43805| Best HMM Match : YscO (HMM E-Value=6) 31 0.99
SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045) 30 2.3
SB_24924| Best HMM Match : WHEP-TRS (HMM E-Value=1.1) 30 2.3
SB_5458| Best HMM Match : E-MAP-115 (HMM E-Value=0.3) 30 2.3
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_38979| Best HMM Match : I-set (HMM E-Value=0.11) 29 4.0
SB_11786| Best HMM Match : Complex1_LYR (HMM E-Value=5.6) 29 4.0
SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033) 29 5.3
SB_28781| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
>SB_30332| Best HMM Match : RVT_1 (HMM E-Value=2.7e-34)
Length = 1683
Score = 99.5 bits (237), Expect = 2e-21
Identities = 44/80 (55%), Positives = 55/80 (68%)
Frame = +3
Query: 45 NKLNRSERVRLQQAAHGKQKHDLSKWKYSELRDTINTSCDIELLEACRHEFHRRLKVYHA 224
N S+ ++ A ++K+DL+KWKY+ELRDTINTSCDIELLEACR EFHRRLKVYH
Sbjct: 743 NDQPESQTLQRNLPAKPEKKYDLTKWKYAELRDTINTSCDIELLEACREEFHRRLKVYHH 802
Query: 225 WKAKNARKSTCSSRSGRRSP 284
WK N + +R+P
Sbjct: 803 WKKANKSRDPSQDAGDQRAP 822
Score = 56.4 bits (130), Expect = 2e-08
Identities = 22/32 (68%), Positives = 27/32 (84%)
Frame = +1
Query: 409 WYAHFDGQYVARQMELHPDKTPVLLRAGADDM 504
W+AHFDGQ+VARQME HP K P+LL +G DD+
Sbjct: 1605 WFAHFDGQWVARQMEFHPGKDPLLLVSGEDDL 1636
Score = 49.2 bits (112), Expect = 3e-06
Identities = 22/32 (68%), Positives = 24/32 (75%)
Frame = +3
Query: 510 CELSLDETGLTRKRGAEILPHEFERQWTAHGG 605
CELSLDETGLTR++GAEI EFE W GG
Sbjct: 1639 CELSLDETGLTRRQGAEIAQQEFEVLWHQFGG 1670
>SB_31407| Best HMM Match : TolA (HMM E-Value=2.5)
Length = 315
Score = 31.1 bits (67), Expect = 0.99
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Frame = +3
Query: 57 RSERVRLQQAAHGKQKHDLSKWKYSELRDTINTSCDIELLEACRH---EFHRRLKVYHAW 227
R E++RL+QAA G+Q+ L + K +E R + +L R E K YH
Sbjct: 79 RIEQMRLRQAAEGEQQKLLEREKIAEKRIIEGVEAENAMLADLRQERIELEEWKKTYHQM 138
Query: 228 KAK 236
K K
Sbjct: 139 KKK 141
>SB_43805| Best HMM Match : YscO (HMM E-Value=6)
Length = 243
Score = 31.1 bits (67), Expect = 0.99
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Frame = +3
Query: 57 RSERVRLQQAAHGKQKHDLSKWKYSELRDTINTSCDIELLEACRH---EFHRRLKVYHAW 227
R E++RL+QAA G+Q+ L + K +E R + +L R E K YH
Sbjct: 79 RIEQMRLRQAAEGEQQKLLEREKIAEKRIIEGVEAENAMLADLRQERIELEEWKKTYHQM 138
Query: 228 KAK 236
K K
Sbjct: 139 KKK 141
>SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045)
Length = 2506
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/74 (22%), Positives = 32/74 (43%)
Frame = +3
Query: 57 RSERVRLQQAAHGKQKHDLSKWKYSELRDTINTSCDIELLEACRHEFHRRLKVYHAWKAK 236
RSE + Q++ H K+K + K + +++D C I L R + ++ +
Sbjct: 195 RSEDDKRQESNHNKRKKSMKKIREEKMKDQWKRRCSISLAHLERKQMKEMQRLERRRQNI 254
Query: 237 NARKSTCSSRSGRR 278
R ST S ++
Sbjct: 255 ERRTSTVQEHSEKQ 268
>SB_24924| Best HMM Match : WHEP-TRS (HMM E-Value=1.1)
Length = 1002
Score = 29.9 bits (64), Expect = 2.3
Identities = 19/72 (26%), Positives = 38/72 (52%)
Frame = +3
Query: 72 RLQQAAHGKQKHDLSKWKYSELRDTINTSCDIELLEACRHEFHRRLKVYHAWKAKNARKS 251
R+ + G +K + +W+ SEL ++ ++ +++ C H + R+++ H N R+
Sbjct: 625 RIGEDRVGAEK-PIEEWRPSELGHKLDHLAEVIIIDECLHG-NLRIRI-HITLHANTRRR 681
Query: 252 TCSSRSGRRSPS 287
C SRSG + S
Sbjct: 682 IC-SRSGHKGTS 692
>SB_5458| Best HMM Match : E-MAP-115 (HMM E-Value=0.3)
Length = 274
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/74 (22%), Positives = 32/74 (43%)
Frame = +3
Query: 57 RSERVRLQQAAHGKQKHDLSKWKYSELRDTINTSCDIELLEACRHEFHRRLKVYHAWKAK 236
RSE + Q++ H K+K + K + +++D C I L R + ++ +
Sbjct: 199 RSEDDKRQESNHNKRKKSMKKIREEKMKDQWKRRCSISLAHLERKQMKEMQRLERRRQNI 258
Query: 237 NARKSTCSSRSGRR 278
R ST S ++
Sbjct: 259 ERRTSTVQEHSEKQ 272
>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2870
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Frame = -3
Query: 506 CMSSAPARSSTGVLSGCSSICRAT---YCPSKC 417
C P+ + S C S+C T +CPSKC
Sbjct: 2231 CAVVVPSNQAEATHSSCPSVCSTTCLPFCPSKC 2263
>SB_38979| Best HMM Match : I-set (HMM E-Value=0.11)
Length = 569
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +3
Query: 30 ALNGENKLNRSERVRLQQAAHGKQKHD 110
A NG SE VR+Q+A GK HD
Sbjct: 258 AANGTYTARESEAVRIQKAEQGKDTHD 284
>SB_11786| Best HMM Match : Complex1_LYR (HMM E-Value=5.6)
Length = 656
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +3
Query: 30 ALNGENKLNRSERVRLQQAAHGKQKHD 110
A NG SE VR+Q+A GK HD
Sbjct: 429 AANGTYTARESEAVRIQKAEQGKDTHD 455
>SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033)
Length = 867
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +3
Query: 102 KHDLSKWKYSELRDTINTSCDIELLEACRHEFHRRLKVYH 221
+HDL Y + D I+ D+ + + RH +H K H
Sbjct: 632 RHDLHNKNYDDGDDNIDNDGDVNVNDDSRHNYHYTQKSKH 671
>SB_28781| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 106
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/23 (60%), Positives = 15/23 (65%)
Frame = -3
Query: 503 MSSAPARSSTGVLSGCSSICRAT 435
MS+A RSS G L G SS CR T
Sbjct: 1 MSAATMRSSVGKLFGFSSKCRGT 23
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,044,510
Number of Sequences: 59808
Number of extensions: 223263
Number of successful extensions: 717
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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