Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021294
         (745 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098989-1|AAK18955.1| 1219|Caenorhabditis elegans Defective spe...    77   1e-14
AF125462-4|AAD12859.1| 1219|Caenorhabditis elegans Heavy chain, ...    64   1e-10
AF125462-3|AAT68888.1| 1144|Caenorhabditis elegans Heavy chain, ...    64   1e-10
Z92834-1|CAB07382.1|  564|Caenorhabditis elegans Hypothetical pr...    30   2.0  
U52517-1|AAA97927.1|  846|Caenorhabditis elegans hum-3 protein.        29   2.6  

>AF098989-1|AAK18955.1| 1219|Caenorhabditis elegans Defective
            spermatogenesis protein15 protein.
          Length = 1219

 Score = 77.4 bits (182), Expect = 1e-14
 Identities = 30/49 (61%), Positives = 41/49 (83%)
 Frame = +3

Query: 96   KQKHDLSKWKYSELRDTINTSCDIELLEACRHEFHRRLKVYHAWKAKNA 242
            + K+DL  WKY++LRD INTS D+ELL AC+ EFHRRL++Y+ WK+KN+
Sbjct: 1032 QSKYDLGNWKYADLRDAINTSNDMELLVACKEEFHRRLRIYNEWKSKNS 1080



 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 19/33 (57%), Positives = 25/33 (75%)
 Frame = +1

Query: 409  WYAHFDGQYVARQMELHPDKTPVLLRAGADDMQ 507
            WYAHF+GQY+ RQ+ + P + P LL AG DD+Q
Sbjct: 1146 WYAHFNGQYIRRQLTIRPSQKPQLLVAGKDDLQ 1178



 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 18/32 (56%), Positives = 24/32 (75%)
 Frame = +3

Query: 510  CELSLDETGLTRKRGAEILPHEFERQWTAHGG 605
            CEL L++TGL RK+GAEI  ++FE  W  +GG
Sbjct: 1180 CELPLEQTGLLRKKGAEISSNDFETMWYHYGG 1211


>AF125462-4|AAD12859.1| 1219|Caenorhabditis elegans Heavy chain,
            unconventional myosinprotein 8, isoform a protein.
          Length = 1219

 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 26/47 (55%), Positives = 36/47 (76%)
 Frame = +3

Query: 102  KHDLSKWKYSELRDTINTSCDIELLEACRHEFHRRLKVYHAWKAKNA 242
            K+D+    ++ LRDTINTS DI LL+AC  EF RRL++Y+ WK++NA
Sbjct: 1054 KYDVGGCSFAYLRDTINTSMDINLLKACEEEFRRRLRIYNEWKSRNA 1100



 Score = 35.9 bits (79), Expect = 0.030
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +1

Query: 409  WYAHFDGQYVARQMELHPDKTPVLLRAGADDMQ 507
            W+ HF GQ + RQ+     + P  L AG DD Q
Sbjct: 1153 WFVHFSGQQIQRQLTFTSSRPPQTLIAGRDDAQ 1185



 Score = 34.7 bits (76), Expect = 0.070
 Identities = 16/27 (59%), Positives = 17/27 (62%)
 Frame = +3

Query: 510  CELSLDETGLTRKRGAEILPHEFERQW 590
            C L+L ET L  KRGAEI   EFE  W
Sbjct: 1187 CTLALQETLLVGKRGAEISEDEFESHW 1213


>AF125462-3|AAT68888.1| 1144|Caenorhabditis elegans Heavy chain,
            unconventional myosinprotein 8, isoform b protein.
          Length = 1144

 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 26/47 (55%), Positives = 36/47 (76%)
 Frame = +3

Query: 102  KHDLSKWKYSELRDTINTSCDIELLEACRHEFHRRLKVYHAWKAKNA 242
            K+D+    ++ LRDTINTS DI LL+AC  EF RRL++Y+ WK++NA
Sbjct: 979  KYDVGGCSFAYLRDTINTSMDINLLKACEEEFRRRLRIYNEWKSRNA 1025



 Score = 35.9 bits (79), Expect = 0.030
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +1

Query: 409  WYAHFDGQYVARQMELHPDKTPVLLRAGADDMQ 507
            W+ HF GQ + RQ+     + P  L AG DD Q
Sbjct: 1078 WFVHFSGQQIQRQLTFTSSRPPQTLIAGRDDAQ 1110



 Score = 34.7 bits (76), Expect = 0.070
 Identities = 16/27 (59%), Positives = 17/27 (62%)
 Frame = +3

Query: 510  CELSLDETGLTRKRGAEILPHEFERQW 590
            C L+L ET L  KRGAEI   EFE  W
Sbjct: 1112 CTLALQETLLVGKRGAEISEDEFESHW 1138


>Z92834-1|CAB07382.1|  564|Caenorhabditis elegans Hypothetical
           protein F39B2.1 protein.
          Length = 564

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +3

Query: 138 RDTINTSCDI-ELLEACRHEFHRRLKVYHAWKAKNARKSTCS 260
           R  ++ +C +  L   CR E HR L   H+ ++K+ +  TCS
Sbjct: 378 RHLVSLTCPLCSLGLGCRAELHRHLMTKHSRRSKDFKCDTCS 419


>U52517-1|AAA97927.1|  846|Caenorhabditis elegans hum-3 protein.
          Length = 846

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +3

Query: 96  KQKHDLSKWKYSELRDTI 149
           + K+DL  WKY++LRD I
Sbjct: 829 QSKYDLGNWKYADLRDAI 846


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,879,210
Number of Sequences: 27780
Number of extensions: 158866
Number of successful extensions: 563
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)