Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021294
         (745 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g47610.1 68418.m05876 zinc finger (C3HC4-type RING finger) fa...    29   3.3  
At5g38220.1 68418.m04608 expressed protein                             29   3.3  
At1g62890.1 68414.m07101 hypothetical protein                          28   5.7  
At1g40230.1 68414.m04784 hypothetical protein                          28   5.7  
At4g24760.1 68417.m03545 expressed protein                             28   7.5  
At1g66900.1 68414.m07603 expressed protein                             28   7.5  
At4g11710.1 68417.m01869 hypothetical protein                          27   9.9  
At3g30380.1 68416.m03835 expressed protein ; expression supporte...    27   9.9  

>At5g47610.1 68418.m05876 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 166

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 165 IELLEACRHEFHRRLKVYHAWKAKNARKSTC 257
           I++LE C+H FH  +K  H W +  +   TC
Sbjct: 120 IQVLEKCQHGFH--VKCIHKWLSTRSSCPTC 148


>At5g38220.1 68418.m04608 expressed protein
          Length = 336

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = +3

Query: 87  AHGKQKHDLSKWKYSELRDTINTSCDIELLEACRHEFHRRLKVY 218
           +HGKQ  +LSK KY  L  +    C++EL      EF + LK Y
Sbjct: 216 SHGKQLWELSKEKYEPLWVSGGGHCNLELYP----EFIKHLKKY 255


>At1g62890.1 68414.m07101 hypothetical protein
          Length = 195

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 150 NTSCDIELLEACRHEFHRRLKVYHAWKAKNARK 248
           NT+   +LL   R+ F  +  VYH W+ +NAR+
Sbjct: 112 NTNMPTDLLFLFRYVF--QASVYHIWRERNARR 142


>At1g40230.1 68414.m04784 hypothetical protein
          Length = 303

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +3

Query: 501 HAECELSLDETGLTRKRGAEILPHEFERQWTAHGGP 608
           H+   LSLD+T LT     + L H      TAH  P
Sbjct: 68  HSHSRLSLDQTSLTISLPHQTLDHSITLDHTAHSIP 103


>At4g24760.1 68417.m03545 expressed protein
          Length = 365

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 20/61 (32%), Positives = 29/61 (47%)
 Frame = +3

Query: 87  AHGKQKHDLSKWKYSELRDTINTSCDIELLEACRHEFHRRLKVYHAWKAKNARKSTCSSR 266
           +HGKQ  +L + KY  L       CD+EL     +  H +  V    K+ + R S+ S R
Sbjct: 218 SHGKQLWELCQEKYEPLWLKGGNHCDLELFP--EYIGHLKKFVSAVEKSASKRNSSFSRR 275

Query: 267 S 269
           S
Sbjct: 276 S 276


>At1g66900.1 68414.m07603 expressed protein
          Length = 272

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = +3

Query: 87  AHGKQKHDLSKWKYSELRDTINTSCDIELLEACRHEFHRRLKVY 218
           +HGK+  +LSK KY  L  +    CD+EL      +F R LK +
Sbjct: 219 SHGKRLWELSKEKYEPLWISGGGHCDLELYP----DFIRHLKKF 258


>At4g11710.1 68417.m01869 hypothetical protein
          Length = 473

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +3

Query: 204 RLKVYHAWKAKNARKSTCSSRSGRRSPSWTPRRV 305
           ++ +Y  W+ +N RK   S  S  R  SW  + +
Sbjct: 412 QVTIYTLWRERNERKHGASPNSSSRLISWIDKHI 445


>At3g30380.1 68416.m03835 expressed protein ; expression supported
           by MPSS
          Length = 399

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 87  AHGKQKHDLSKWKYSELRDTINTSCDIEL 173
           +HGKQ  +L K KY  L       CD+EL
Sbjct: 217 SHGKQLFELCKEKYEPLWIKGGNHCDLEL 245


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,237,404
Number of Sequences: 28952
Number of extensions: 144496
Number of successful extensions: 456
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)