Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021292
         (691 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        23   2.4  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   5.4  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   7.2  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        21   9.5  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   9.5  

>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 555 NSSPTSPCRHGGG*GPYPNHA 617
           ++SP  P  H     PYP+H+
Sbjct: 331 STSPNLPLTHNIAHNPYPSHS 351


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 622 FREHPPRSVAEDGQERR 672
           ++EH  RS+ E G  RR
Sbjct: 573 YKEHIMRSITESGGRRR 589


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -3

Query: 641  RGGCSRKPGMVWIRTLAASMATGRCRR*IPPTQTPP 534
            R G  R P +  IR + A   TG+ +  IPP    P
Sbjct: 1748 RCGEGRHPLLTTIRNVLADAGTGQ-QETIPPIDEEP 1782


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = -3

Query: 278 VGQTA*QNPPTPQRAKYLGDPNSQDSVGTAADAAMPPVC 162
           + +T  QN      ++   +PN  DS+   A++A+  +C
Sbjct: 508 LSETFTQNLSLMDESEGRQEPNMTDSLTRLANSALDNIC 546


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 504 TATLTVPSCTWRRLRRRNSSP 566
           TAT+ + +CT   L+   +SP
Sbjct: 247 TATVQLSTCTRTTLKNNRASP 267


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,968
Number of Sequences: 336
Number of extensions: 3444
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18114270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)