Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021292
         (691 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    34   0.001
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    34   0.001
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    24   1.2  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    24   1.6  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   3.6  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   6.3  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   6.3  
S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor prot...    21   8.4  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 33.9 bits (74), Expect = 0.001
 Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 8/94 (8%)
 Frame = +3

Query: 258 LSCGLTHTAVVPLDLVKCRLQV--------DAEKYKNVVNGFKVSVREEGVRGLAKGWAP 413
           ++  ++ T V P++ VK  LQV        + ++YK +++ F    +E+G     +G   
Sbjct: 19  VAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWRGNLA 78

Query: 414 TFIGYSMQGLCKFGFYEVFKVAYAGMLDDETATL 515
             I Y       F F + +K  + G +D  T  L
Sbjct: 79  NVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFL 112


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 33.9 bits (74), Expect = 0.001
 Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 8/94 (8%)
 Frame = +3

Query: 258 LSCGLTHTAVVPLDLVKCRLQV--------DAEKYKNVVNGFKVSVREEGVRGLAKGWAP 413
           ++  ++ T V P++ VK  LQV        + ++YK +++ F    +E+G     +G   
Sbjct: 19  VAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWRGNLA 78

Query: 414 TFIGYSMQGLCKFGFYEVFKVAYAGMLDDETATL 515
             I Y       F F + +K  + G +D  T  L
Sbjct: 79  NVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFL 112


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +1

Query: 490 CWTTRPLHLPYLRVPGGVCVGGIHRRHRP 576
           CW+ R     ++R+    C G + RR++P
Sbjct: 392 CWS-RDFRRAFVRILCACCPGRVRRRYQP 419


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -3

Query: 305 HQVEGHHGRVGQTA*QNPPTPQRAKYLGDP 216
           HQ + H+G   Q   Q     Q+++  GDP
Sbjct: 22  HQHQQHYGAAVQVPQQTQSVQQQSQQAGDP 51


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 541 VCVGGIHRRHRPVAMEAAKV 600
           VC+    RRHRPV     K+
Sbjct: 105 VCMRKCPRRHRPVCASNGKI 124


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -3

Query: 554 PPTQTPPGTRRYGK 513
           PP QTPP  +  G+
Sbjct: 395 PPRQTPPSRKESGR 408


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 113 GPRNGEFRAASSNEEN 66
           GPRNG+ +  SS  EN
Sbjct: 210 GPRNGKRKRKSSTIEN 225


>S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor
           protein.
          Length = 90

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = +1

Query: 247 VGGFCHAV 270
           VGGFCH++
Sbjct: 10  VGGFCHSI 17


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,260
Number of Sequences: 438
Number of extensions: 4445
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)