Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021291
         (654 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83117-6|CAN86902.1| 1931|Caenorhabditis elegans Hypothetical pr...    36   0.033
Z83117-5|CAN86901.1| 1971|Caenorhabditis elegans Hypothetical pr...    36   0.033
Z83117-4|CAB05572.2| 2032|Caenorhabditis elegans Hypothetical pr...    36   0.033
Z80219-10|CAN86596.1| 1931|Caenorhabditis elegans Hypothetical p...    36   0.033
Z80219-9|CAN86595.1| 1971|Caenorhabditis elegans Hypothetical pr...    36   0.033
Z80219-8|CAB02303.2| 2032|Caenorhabditis elegans Hypothetical pr...    36   0.033
AJ276020-1|CAC81668.1| 1971|Caenorhabditis elegans putative TRP ...    36   0.033

>Z83117-6|CAN86902.1| 1931|Caenorhabditis elegans Hypothetical protein
            T01H8.5d protein.
          Length = 1931

 Score = 35.5 bits (78), Expect = 0.033
 Identities = 19/54 (35%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
 Frame = +3

Query: 147  ETKALNVTSRDPIKSPLKKSLSFLQLRCRNDIYRALPSSVSIR---KYVRPNRA 299
            + + ++VTS DP+  PL K LS + +R R++ Y ++  S++IR   + +R NR+
Sbjct: 1710 QQRLMSVTSMDPLPLPLAK-LSTMSIRRRHEEYTSITDSIAIRHPERRIRNNRS 1762


>Z83117-5|CAN86901.1| 1971|Caenorhabditis elegans Hypothetical protein
            T01H8.5c protein.
          Length = 1971

 Score = 35.5 bits (78), Expect = 0.033
 Identities = 19/54 (35%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
 Frame = +3

Query: 147  ETKALNVTSRDPIKSPLKKSLSFLQLRCRNDIYRALPSSVSIR---KYVRPNRA 299
            + + ++VTS DP+  PL K LS + +R R++ Y ++  S++IR   + +R NR+
Sbjct: 1750 QQRLMSVTSMDPLPLPLAK-LSTMSIRRRHEEYTSITDSIAIRHPERRIRNNRS 1802


>Z83117-4|CAB05572.2| 2032|Caenorhabditis elegans Hypothetical protein
            T01H8.5a protein.
          Length = 2032

 Score = 35.5 bits (78), Expect = 0.033
 Identities = 19/54 (35%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
 Frame = +3

Query: 147  ETKALNVTSRDPIKSPLKKSLSFLQLRCRNDIYRALPSSVSIR---KYVRPNRA 299
            + + ++VTS DP+  PL K LS + +R R++ Y ++  S++IR   + +R NR+
Sbjct: 1811 QQRLMSVTSMDPLPLPLAK-LSTMSIRRRHEEYTSITDSIAIRHPERRIRNNRS 1863


>Z80219-10|CAN86596.1| 1931|Caenorhabditis elegans Hypothetical
            protein T01H8.5d protein.
          Length = 1931

 Score = 35.5 bits (78), Expect = 0.033
 Identities = 19/54 (35%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
 Frame = +3

Query: 147  ETKALNVTSRDPIKSPLKKSLSFLQLRCRNDIYRALPSSVSIR---KYVRPNRA 299
            + + ++VTS DP+  PL K LS + +R R++ Y ++  S++IR   + +R NR+
Sbjct: 1710 QQRLMSVTSMDPLPLPLAK-LSTMSIRRRHEEYTSITDSIAIRHPERRIRNNRS 1762


>Z80219-9|CAN86595.1| 1971|Caenorhabditis elegans Hypothetical protein
            T01H8.5c protein.
          Length = 1971

 Score = 35.5 bits (78), Expect = 0.033
 Identities = 19/54 (35%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
 Frame = +3

Query: 147  ETKALNVTSRDPIKSPLKKSLSFLQLRCRNDIYRALPSSVSIR---KYVRPNRA 299
            + + ++VTS DP+  PL K LS + +R R++ Y ++  S++IR   + +R NR+
Sbjct: 1750 QQRLMSVTSMDPLPLPLAK-LSTMSIRRRHEEYTSITDSIAIRHPERRIRNNRS 1802


>Z80219-8|CAB02303.2| 2032|Caenorhabditis elegans Hypothetical protein
            T01H8.5a protein.
          Length = 2032

 Score = 35.5 bits (78), Expect = 0.033
 Identities = 19/54 (35%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
 Frame = +3

Query: 147  ETKALNVTSRDPIKSPLKKSLSFLQLRCRNDIYRALPSSVSIR---KYVRPNRA 299
            + + ++VTS DP+  PL K LS + +R R++ Y ++  S++IR   + +R NR+
Sbjct: 1811 QQRLMSVTSMDPLPLPLAK-LSTMSIRRRHEEYTSITDSIAIRHPERRIRNNRS 1863


>AJ276020-1|CAC81668.1| 1971|Caenorhabditis elegans putative TRP
            homologous cationchannel protein.
          Length = 1971

 Score = 35.5 bits (78), Expect = 0.033
 Identities = 19/54 (35%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
 Frame = +3

Query: 147  ETKALNVTSRDPIKSPLKKSLSFLQLRCRNDIYRALPSSVSIR---KYVRPNRA 299
            + + ++VTS DP+  PL K LS + +R R++ Y ++  S++IR   + +R NR+
Sbjct: 1750 QQRLMSVTSMDPLPLPLAK-LSTMSIRRRHEEYTSITDSIAIRHPERRIRNNRS 1802


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,218,798
Number of Sequences: 27780
Number of extensions: 280957
Number of successful extensions: 576
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)