Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021290
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    28   1.4  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    27   1.8  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    27   2.4  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   2.4  
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    26   5.5  
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl...    26   5.5  
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb...    26   5.5  
SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    25   7.3  
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa...    25   9.6  

>SPBC800.10c |||EPS15 repeat family actin cortical patch component
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +3

Query: 213 APGASNGTSSKSEDTPYLSRKPSRRFPNLEIPSPMEKPSR 332
           A  AS  + S     P LSR P  + PN+ +  P   PS+
Sbjct: 219 ASAASTSSVSAPSQYPGLSRSPPVQAPNIPVSDPWAIPSQ 258


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +3

Query: 201 ENGNAPGASNGTSSKSEDTPYLSRKPSRRFPNLEIPSPMEKPS 329
           +N ++  +S+ + S    T    + PS    +L+ PSP  KPS
Sbjct: 130 QNPSSSSSSSSSQSSQHSTHLQFQIPSNEKKSLDDPSPRRKPS 172


>SPBC23E6.09 |ssn6||transcriptional corepressor
            Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 21/73 (28%), Positives = 33/73 (45%)
 Frame = +3

Query: 123  RKMSTEAQNTDAAVEQVTQEVKDVKLENGNAPGASNGTSSKSEDTPYLSRKPSRRFPNLE 302
            R+  T A N ++  ++ TQ     KLEN      S  +SSKS+     S KP +  P L+
Sbjct: 862  RETRTSASN-ESDPKKSTQRDSSKKLENSTVVSGSPSSSSKSDAAK--SIKPQKPEPALK 918

Query: 303  IPSPMEKPSRSRK 341
                   P  +++
Sbjct: 919  PVEGTADPKSTKR 931


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 15/57 (26%), Positives = 23/57 (40%)
 Frame = +3

Query: 165 EQVTQEVKDVKLENGNAPGASNGTSSKSEDTPYLSRKPSRRFPNLEIPSPMEKPSRS 335
           +Q+ +    VK     + G    TS+        S +P  R P+L  P+P   P  S
Sbjct: 204 DQIAENADFVKAYLNESAGTPTSTSAPPIPPSIPSSRPPERVPSLSAPAPPPIPPPS 260


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1485

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 376 WKENNNNGHGYSLQ 417
           WKE NNNG G+ ++
Sbjct: 640 WKEANNNGRGWKIK 653


>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
           subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 709

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 1/70 (1%)
 Frame = +3

Query: 123 RKMSTEAQNTDAAVEQVTQEVKDVKLENGNAPGASNGTSSKSEDTPYLSRKPSRRF-PNL 299
           R +S     + ++    T    D K  +   P  ++ TSS    TP L+        P+ 
Sbjct: 119 RSLSNNISLSQSSSSPATSSFSDPKAFSAGVPKFTSDTSSTVSSTPSLNHSLQNSMPPST 178

Query: 300 EIPSPMEKPS 329
             P P+  P+
Sbjct: 179 PTPPPVWAPT 188


>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 923

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 340 LRERDGFSIGLGISKFGKRLEGFL 269
           L   D F++ + +SK GK   GFL
Sbjct: 804 LTRNDPFTLTIAVSKIGKNASGFL 827


>SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 335

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = +3

Query: 189 DVKLENGNAPGASNGTSSKSEDTPYLSRKPSRRFPNLEIPSPMEKPSRSRKATNG 353
           +V L +GN    S+  S        +S   S+   NL   S ++ P R  K TNG
Sbjct: 110 NVSLPSGNNFFTSSFDSENISKPGEVSLSESQLLGNLNQQSSIQLPDRMPKTTNG 164


>SPCC4B3.12 |set9||histone lysine methyltransferase
           Set9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 441

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 437 LGIDDYQKFLDDLAKNK 487
           L +DDY+KF +DL K +
Sbjct: 340 LNVDDYRKFREDLWKKR 356


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,677,918
Number of Sequences: 5004
Number of extensions: 54237
Number of successful extensions: 168
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)