Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021290
         (656 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0704 - 26953474-26953643,26953770-26953801,26953915-269540...    31   0.81 
03_05_0599 - 26012956-26013316,26013444-26013736,26013813-260140...    30   1.9  
12_01_1020 - 10407397-10407507,10407927-10407979,10408005-104081...    29   2.5  
06_03_1162 + 28093749-28093851,28093939-28093997,28094691-280947...    29   3.3  
08_01_0008 - 65366-65497,65588-65759,65846-65972,66058-66140,662...    28   7.5  
06_01_0136 + 1043888-1044487                                           28   7.5  
01_07_0162 + 41576824-41577438                                         28   7.5  
09_02_0205 + 5772442-5772831                                           27   9.9  
06_01_0416 + 2965761-2965809,2965995-2966172,2966256-2966327,296...    27   9.9  
05_07_0277 - 28909502-28909621,28910053-28910583,28910629-289107...    27   9.9  

>03_05_0704 -
           26953474-26953643,26953770-26953801,26953915-26954009,
           26954107-26954180,26954283-26954412,26954522-26954585,
           26954660-26954722,26954795-26954937,26955386-26955523,
           26955610-26955731,26955805-26955976,26956559-26956630,
           26956753-26956887,26956987-26957103,26957184-26957316,
           26957455-26957561,26958060-26958077,26958235-26958379,
           26958472-26958671,26960744-26961421
          Length = 935

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +3

Query: 159 AVEQVTQEVKDVKLENGNAPGASNGTS-SKSEDTPYLSRKPSRRFPNLEIPSPMEKPSRS 335
           AV  +  E+K   + +G AP A  G+S + ++ T  + R+PS+       P P   P  S
Sbjct: 128 AVGALCGEMKGKMVVSGGAPPAGQGSSLAAAQGTDNVKREPSQVAAPAPAPPPATLPPSS 187

Query: 336 RKA 344
            KA
Sbjct: 188 SKA 190


>03_05_0599 -
           26012956-26013316,26013444-26013736,26013813-26014040,
           26014666-26014897,26015392-26015475,26015562-26015623,
           26016263-26016367,26016458-26016481
          Length = 462

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 20/67 (29%), Positives = 31/67 (46%)
 Frame = +3

Query: 6   ATAGSISAATKSASLKRLSATDSLA*YMISSHKYIKHL*RKMSTEAQNTDAAVEQVTQEV 185
           AT G+++ A  +A+   L AT  +   M  S +    L      E Q  D  + + T  V
Sbjct: 115 ATLGTVATAVANANATALEATKEIEAAMKVSMRAALGLGANNPKEGQLDDLTIMKETLRV 174

Query: 186 KDVKLEN 206
           KD +L+N
Sbjct: 175 KDEELQN 181


>12_01_1020 -
           10407397-10407507,10407927-10407979,10408005-10408122,
           10408405-10408407
          Length = 94

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -3

Query: 378 PSITLACFIHLSLCESVMAFPSDLGSPNLENALKASLKDKAYPRFYWT 235
           PS+ L   I + +  SV+  P    SP L    KAS+ +  Y R Y T
Sbjct: 25  PSLILRRLIDMVVQSSVLPLPLSPHSPPLRQQPKASIDECIYSRIYST 72


>06_03_1162 +
           28093749-28093851,28093939-28093997,28094691-28094766,
           28094848-28094919,28095023-28095110,28095230-28095485,
           28095583-28095698,28096064-28096127,28096252-28096354,
           28096446-28096554,28097048-28097234
          Length = 410

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
 Frame = -3

Query: 321 FPSDLGSPNLE-----NALKASLKDKAYPRFYWTFHWMLP 217
           FP+  G PN E     N+L  +L DK    +   FHW LP
Sbjct: 78  FPNGTGEPNEEGLSYYNSLIDALLDKGIEPYVTLFHWDLP 117


>08_01_0008 -
           65366-65497,65588-65759,65846-65972,66058-66140,
           66232-66329
          Length = 203

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +3

Query: 126 KMSTEAQNTDAAVEQVTQEVKDVKLENGNAPGASNG 233
           ++S EAQ  + AVE    + K  K  N N  GA  G
Sbjct: 57  RISLEAQVVEQAVEVAASKKKSGKNNNNNGEGAKKG 92


>06_01_0136 + 1043888-1044487
          Length = 199

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 632 RCLCEPVYLLVSVNRSTAAAAAGDFVTC 549
           R  C  VY +V+ N+S AAAA+   + C
Sbjct: 170 RVSCSDVYFVVADNKSAAAAASSTPIDC 197


>01_07_0162 + 41576824-41577438
          Length = 204

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 513 EVDNLRPTGNYLTRYKITGSRSGRRSIDRHEQIYW 617
           E+   R TG  +  Y+IT  R  RR+ D  E  +W
Sbjct: 132 EMGQQRSTGWMMAEYEITDPRCYRRADDGEEDDFW 166


>09_02_0205 + 5772442-5772831
          Length = 129

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 480 RTKKWNLTKLEEVDNLRPTGNYLTRYKITGSRSGRRS 590
           +T++ N     E+D LR      T  K+T + +GRRS
Sbjct: 74  KTRRENERLTRELDELRAAATEKTERKMTSAAAGRRS 110


>06_01_0416 +
           2965761-2965809,2965995-2966172,2966256-2966327,
           2966849-2967137,2967941-2968081,2969011-2969115,
           2969354-2969501,2970023-2970075,2970189-2970266,
           2970361-2970480,2970779-2970943,2971663-2971797,
           2972063-2972182
          Length = 550

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -1

Query: 608 LLVSVNRSTAAAAAGDFVTCE-VIPGW 531
           L+VSVN    A++ GD   CE V+ GW
Sbjct: 13  LVVSVNLLQVASSDGDHARCEGVVKGW 39


>05_07_0277 -
           28909502-28909621,28910053-28910583,28910629-28910721,
           28910758-28911501
          Length = 495

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -3

Query: 447 SMPSFTDLSFLK*--IAVSVVVIFFPSITLACFIHLSLCESVMAFPSDLGS 301
           S+  F DL++L      +SVV  F   +T    + LS CE ++   SDLG+
Sbjct: 120 SIKDFHDLNYLNLSYTNISVVPNFLGVVTSLEVLDLSHCEKLVEIHSDLGN 170


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,713,739
Number of Sequences: 37544
Number of extensions: 365871
Number of successful extensions: 1133
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1133
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)