Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021290
         (656 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34003| Best HMM Match : No HMM Matches (HMM E-Value=.)              57   1e-08
SB_52992| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   9e-06
SB_40368| Best HMM Match : SASP_gamma (HMM E-Value=2.3)                31   0.62 
SB_31697| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_13097| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_9774| Best HMM Match : DUF1572 (HMM E-Value=9.7)                    29   2.5  
SB_39021| Best HMM Match : M (HMM E-Value=5.3e-06)                     29   3.3  
SB_50496| Best HMM Match : FHA (HMM E-Value=7.8e-07)                   29   4.4  
SB_35587| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_59790| Best HMM Match : VWA (HMM E-Value=0)                         28   5.8  
SB_33494| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_35812| Best HMM Match : Atrophin-1 (HMM E-Value=0.23)               28   5.8  
SB_47601| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_39569| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_31444| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_16493| Best HMM Match : NACHT (HMM E-Value=1.1e-08)                 28   7.7  
SB_38051| Best HMM Match : LIM (HMM E-Value=0.34)                      28   7.7  

>SB_34003| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 207

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 26/43 (60%), Positives = 29/43 (67%)
 Frame = +1

Query: 526 CGQPGITSHVTKSPAAAAAVDRLTDTSKYTGSHRQRFDETGKG 654
           C   G  +  T     A AVDRLTDT KYTGSH++RFDETGKG
Sbjct: 99  CEGKGPVASKTTKVVKAGAVDRLTDTRKYTGSHKERFDETGKG 141


>SB_52992| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 516

 Score = 47.6 bits (108), Expect = 9e-06
 Identities = 29/61 (47%), Positives = 38/61 (62%), Gaps = 3/61 (4%)
 Frame = +1

Query: 481 EQKSGT*RN*KKLTT--C-GQPGITSHVTKSPAAAAAVDRLTDTSKYTGSHRQRFDETGK 651
           E+K G+     KLT   C G+   TS  TK+      V+RLTDT  YTGSH++RFD++GK
Sbjct: 426 EKKFGSKDQVGKLTEKICKGKGPATSGATKA-VKVGGVERLTDTKCYTGSHKERFDKSGK 484

Query: 652 G 654
           G
Sbjct: 485 G 485


>SB_40368| Best HMM Match : SASP_gamma (HMM E-Value=2.3)
          Length = 325

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
 Frame = +3

Query: 174 TQEVKDVKLENGNAPGASNGTSSKSEDTPYLSRK--PSRRFPNLE---IPSPMEKPSRSR 338
           ++E + V+  N  +P   +  SSK   T    +   PSR  P ++   +  P EKP RSR
Sbjct: 144 SKETQPVQQRNPASPAKKHHRSSKETPTSLAEKPSWPSRETPPVQPRNLAGPAEKPHRSR 203

Query: 339 KAT 347
           + T
Sbjct: 204 RET 206


>SB_31697| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 518

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
 Frame = +3

Query: 132 STEAQNTDAAVEQVTQEVKDVK-LENGNAPGASNGTSSK-SEDTPYLSRKPSRRFPNLEI 305
           S+E +  D   ++  ++ ++ K LE    P   +G SS   ++TP  S K +   P+   
Sbjct: 414 SSEEEPEDKPPKEKAEKEEEKKPLEAKTTPNVGSGASSAFQKNTPSPSPKTTPSKPSWSR 473

Query: 306 PSPMEKPSRSRKATNG*NKPKLLMERK 386
           P+P    S S   T   + P ++ +R+
Sbjct: 474 PTPAASASTSPSGTKTKSPPPVMAKRQ 500


>SB_13097| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 607

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
 Frame = +1

Query: 472 SREEQKSGT*RN*KKLTTCGQPG---ITSHVTKSPAAAAAVDRLTDTSKYTGSHRQRFDE 642
           +R E ++ + R+   L T  +      TS V KS AA    DR   +   TGS  Q+   
Sbjct: 277 TRSESQNSSSRHHTSLVTISRASNTFTTSGVPKSSAALLLSDRHLPSKNSTGSSSQKISV 336

Query: 643 TGK 651
           TGK
Sbjct: 337 TGK 339


>SB_9774| Best HMM Match : DUF1572 (HMM E-Value=9.7)
          Length = 504

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = -2

Query: 148 FCASVDIFLYKCLMYLCDDIIYYASESVADRRLSDAL 38
           F AS DI   +CL    D +IY AS +  D  L D L
Sbjct: 153 FIASEDILQIQCLYPDTDSVIYIASPAALDPPLGDYL 189


>SB_39021| Best HMM Match : M (HMM E-Value=5.3e-06)
          Length = 1691

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 22/94 (23%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
 Frame = +2

Query: 299 GDPKSDGKAITLSQSDKWMKQAKVIDGKKITTTDTAIHFKKLKSVKLGIDDYQKFLDDLA 478
           G  +S+G+  T   +      A V DG + + +      +KL  +   +D  + ++  L 
Sbjct: 14  GSGQSEGRRATSQPNLAPESAAAVKDGSRSSKSTIDELRRKLVHLNKELDQERVYVKQLR 73

Query: 479 KNKKVELDEIRRS*QLAANRELPHTLQN-HRQPQ 577
           + K VEL  +R   Q  A+ +L       H++ Q
Sbjct: 74  REKSVELRHLREDEQRKASTQLTELRSKLHKEKQ 107


>SB_50496| Best HMM Match : FHA (HMM E-Value=7.8e-07)
          Length = 766

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +2

Query: 425 KSVKLGIDDYQKFLDDLAKNKKVELDEIR 511
           K V++  D+ + FLD LAK  K+E DE R
Sbjct: 719 KLVRVSSDENELFLDYLAKRAKLERDEER 747


>SB_35587| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 953

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 511 KKLTTCGQPGITSHVTKSPAAAAAVDRLTDT 603
           KK T CG P +    TKS     ++DRL D+
Sbjct: 902 KKCTVCGTPLLFQGYTKSHPQCFSIDRLDDS 932


>SB_59790| Best HMM Match : VWA (HMM E-Value=0)
          Length = 4151

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +3

Query: 264 LSRKPSRRFPNLEIPSPMEKPSRSRKATNG*NKPKLLMERK 386
           L+RK   RFPN     P+++ S  R  + G N P +    K
Sbjct: 242 LARKTCERFPNPIAVFPLDRRSNGRDISRGRNTPGMQRNTK 282


>SB_33494| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1097

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/64 (25%), Positives = 29/64 (45%)
 Frame = +3

Query: 141 AQNTDAAVEQVTQEVKDVKLENGNAPGASNGTSSKSEDTPYLSRKPSRRFPNLEIPSPME 320
           A+N     ++     KD + +    P +   + S+  D   + RKP +   N   P+P +
Sbjct: 555 AENLFEVSDEENDNDKDNEEDRFFEP-SQEASGSEHSDEEVVDRKPPKNVTNKPPPAPAK 613

Query: 321 KPSR 332
           KPS+
Sbjct: 614 KPSK 617


>SB_35812| Best HMM Match : Atrophin-1 (HMM E-Value=0.23)
          Length = 4240

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/42 (30%), Positives = 17/42 (40%)
 Frame = +3

Query: 210 NAPGASNGTSSKSEDTPYLSRKPSRRFPNLEIPSPMEKPSRS 335
           N P   N  S++S   P  + +P  R PN   P    K   S
Sbjct: 606 NLPSTDNAGSAQSTRAPRAASEPPERLPNARSPGVFAKTKSS 647


>SB_47601| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 652

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
 Frame = +3

Query: 111 KHL*RKMSTEAQ-NTDAAVEQVTQEVKDVKLENGNAPGASNGTSSKSEDTPYLSRKPSRR 287
           + L RK S+E + N +   +Q  +E +  + E G+   A NG +S +++ P  + +    
Sbjct: 559 RSLPRKFSSETEKNAEDLAKQAKKEGEGRQGETGDK--AENGLTSDADEKPLPTEEKLSH 616

Query: 288 FPNLEIPSPMEKPS 329
             + +IP P +  S
Sbjct: 617 VKSSKIPDPSKHAS 630


>SB_39569| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 857

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 17/64 (26%), Positives = 27/64 (42%)
 Frame = +2

Query: 302 DPKSDGKAITLSQSDKWMKQAKVIDGKKITTTDTAIHFKKLKSVKLGIDDYQKFLDDLAK 481
           +PKS     T  +  K  +  K   G+K        HFKK   V  G D ++ + D  + 
Sbjct: 461 EPKSKSNISTFDKKQK-SRLRKFSKGRKDDILKAKRHFKKGHKVSEGADAHESYEDSRSS 519

Query: 482 NKKV 493
           ++ V
Sbjct: 520 SENV 523


>SB_31444| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 144

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = +2

Query: 317 GKAITLSQSDKWMKQAKVIDGKKIT--TTDTAIHFKKLKSVKLGID-DYQKFLDDLAKNK 487
           GK I + +  KW+     I  +K    T    IH  K++ VKL ID D +K LD   ++K
Sbjct: 68  GKVIQVYRK-KWVIHIDRIQREKANGATVSVGIHPSKVEIVKLKIDKDRKKILDRKNRSK 126

Query: 488 KVE 496
             E
Sbjct: 127 LAE 129


>SB_16493| Best HMM Match : NACHT (HMM E-Value=1.1e-08)
          Length = 833

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 376 INNFGLFHPFVALRERDGFSIGLGISKFGKR 284
           IN F  +H F++  +RDGF   LG   F  R
Sbjct: 262 INLFNFYHEFLSGGKRDGFHEALGEIAFNAR 292


>SB_38051| Best HMM Match : LIM (HMM E-Value=0.34)
          Length = 168

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 511 KKLTTCGQPGITSHVTKSPAAAAAVDRLTDTSKY 612
           KK T CG   +    TKS     ++DRL D+  Y
Sbjct: 117 KKCTVCGTQLLLQGYTKSHPQCFSIDRLDDSQVY 150


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,160,665
Number of Sequences: 59808
Number of extensions: 416298
Number of successful extensions: 1607
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1601
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)