Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021290
         (656 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88308-6|AAB42320.1|  180|Caenorhabditis elegans Hypothetical pr...    42   4e-04
Z81558-5|CAB04542.2|  543|Caenorhabditis elegans Hypothetical pr...    31   0.95 
Z81459-2|CAB03828.2|  543|Caenorhabditis elegans Hypothetical pr...    31   0.95 
Z48584-8|CAK55179.1|  435|Caenorhabditis elegans Hypothetical pr...    30   1.7  
Z48584-7|CAH04712.1|  448|Caenorhabditis elegans Hypothetical pr...    30   1.7  
Z48584-5|CAD57717.1|  501|Caenorhabditis elegans Hypothetical pr...    30   1.7  
Z48584-4|CAD57716.1|  536|Caenorhabditis elegans Hypothetical pr...    30   1.7  
Z48584-3|CAD57715.1|  524|Caenorhabditis elegans Hypothetical pr...    30   1.7  
Z48584-2|CAA88477.2|  481|Caenorhabditis elegans Hypothetical pr...    30   1.7  
U53335-6|AAA96171.2|  518|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z68297-2|CAA92594.3|  522|Caenorhabditis elegans Hypothetical pr...    29   2.9  
U97010-1|AAB52322.1|  334|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z92808-1|CAB07266.2|  606|Caenorhabditis elegans Hypothetical pr...    29   3.8  
AC024812-4|AAF59550.1|  197|Caenorhabditis elegans Hypothetical ...    28   5.1  
Z81077-11|CAB03068.2|  244|Caenorhabditis elegans Hypothetical p...    27   8.9  
Z81031-3|CAF31467.1|  455|Caenorhabditis elegans Hypothetical pr...    27   8.9  
Z81031-1|CAB02718.4|  432|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>U88308-6|AAB42320.1|  180|Caenorhabditis elegans Hypothetical
           protein C32E8.3 protein.
          Length = 180

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 17/28 (60%), Positives = 21/28 (75%)
 Frame = +1

Query: 571 AAAAVDRLTDTSKYTGSHRQRFDETGKG 654
           AA    RLTD +KYTG+H++RFD  GKG
Sbjct: 122 AAGVYSRLTDHTKYTGAHKERFDAEGKG 149



 Score = 36.3 bits (80), Expect = 0.019
 Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
 Frame = +2

Query: 344 DKWMKQAKVIDGKKITTTDTAIHFKKL--KSVKLGIDDYQKFLDDLAKNK 487
           DKW+K A V+D K IT T T I F K+     K   D+ +K L  +A+++
Sbjct: 38  DKWLKDAGVLDNKAITGTMTGIAFSKVTGPKKKATFDETKKVLAFVAEDR 87


>Z81558-5|CAB04542.2|  543|Caenorhabditis elegans Hypothetical
           protein F59D12.4 protein.
          Length = 543

 Score = 30.7 bits (66), Expect = 0.95
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = +3

Query: 141 AQNTDAAVEQVTQEVKDVKLEN-GNAPGASNGTSSKSEDTPYLSRKPSRRFPNLEIPSPM 317
           +   +A ++   ++  D + E+ GN PG+ +  SSK E +PY  RK   +   +  P P+
Sbjct: 458 SHKAEARIQSDDEDYSDYEYESSGNFPGSGSYMSSKREYSPYF-RKHDDKIEIVIEPYPV 516

Query: 318 EKPSR 332
              SR
Sbjct: 517 ISTSR 521


>Z81459-2|CAB03828.2|  543|Caenorhabditis elegans Hypothetical
           protein F59D12.4 protein.
          Length = 543

 Score = 30.7 bits (66), Expect = 0.95
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = +3

Query: 141 AQNTDAAVEQVTQEVKDVKLEN-GNAPGASNGTSSKSEDTPYLSRKPSRRFPNLEIPSPM 317
           +   +A ++   ++  D + E+ GN PG+ +  SSK E +PY  RK   +   +  P P+
Sbjct: 458 SHKAEARIQSDDEDYSDYEYESSGNFPGSGSYMSSKREYSPYF-RKHDDKIEIVIEPYPV 516

Query: 318 EKPSR 332
              SR
Sbjct: 517 ISTSR 521


>Z48584-8|CAK55179.1|  435|Caenorhabditis elegans Hypothetical
           protein ZK1321.2f protein.
          Length = 435

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = -3

Query: 405 AVSVVVIFFPSITLACFIHLSLCESVMAFPSDLGSPNLENALKASLKDKAYPRFYWTFHW 226
           ++S  +I F SI +     +S C   +  PSD+    + N+  A L D+   + Y  F W
Sbjct: 170 SLSARIIAFISIAVIALSIISFCWETV--PSDIEEKPINNSATAELLDEMDEKHYSPFFW 227

Query: 225 M 223
           +
Sbjct: 228 I 228


>Z48584-7|CAH04712.1|  448|Caenorhabditis elegans Hypothetical
           protein ZK1321.2e protein.
          Length = 448

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = -3

Query: 405 AVSVVVIFFPSITLACFIHLSLCESVMAFPSDLGSPNLENALKASLKDKAYPRFYWTFHW 226
           ++S  +I F SI +     +S C   +  PSD+    + N+  A L D+   + Y  F W
Sbjct: 183 SLSARIIAFISIAVIALSIISFCWETV--PSDIEEKPINNSATAELLDEMDEKHYSPFFW 240

Query: 225 M 223
           +
Sbjct: 241 I 241


>Z48584-5|CAD57717.1|  501|Caenorhabditis elegans Hypothetical
           protein ZK1321.2d protein.
          Length = 501

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = -3

Query: 405 AVSVVVIFFPSITLACFIHLSLCESVMAFPSDLGSPNLENALKASLKDKAYPRFYWTFHW 226
           ++S  +I F SI +     +S C   +  PSD+    + N+  A L D+   + Y  F W
Sbjct: 236 SLSARIIAFISIAVIALSIISFCWETV--PSDIEEKPINNSATAELLDEMDEKHYSPFFW 293

Query: 225 M 223
           +
Sbjct: 294 I 294


>Z48584-4|CAD57716.1|  536|Caenorhabditis elegans Hypothetical
           protein ZK1321.2c protein.
          Length = 536

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = -3

Query: 405 AVSVVVIFFPSITLACFIHLSLCESVMAFPSDLGSPNLENALKASLKDKAYPRFYWTFHW 226
           ++S  +I F SI +     +S C   +  PSD+    + N+  A L D+   + Y  F W
Sbjct: 271 SLSARIIAFISIAVIALSIISFCWETV--PSDIEEKPINNSATAELLDEMDEKHYSPFFW 328

Query: 225 M 223
           +
Sbjct: 329 I 329


>Z48584-3|CAD57715.1|  524|Caenorhabditis elegans Hypothetical
           protein ZK1321.2b protein.
          Length = 524

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = -3

Query: 405 AVSVVVIFFPSITLACFIHLSLCESVMAFPSDLGSPNLENALKASLKDKAYPRFYWTFHW 226
           ++S  +I F SI +     +S C   +  PSD+    + N+  A L D+   + Y  F W
Sbjct: 259 SLSARIIAFISIAVIALSIISFCWETV--PSDIEEKPINNSATAELLDEMDEKHYSPFFW 316

Query: 225 M 223
           +
Sbjct: 317 I 317


>Z48584-2|CAA88477.2|  481|Caenorhabditis elegans Hypothetical
           protein ZK1321.2a protein.
          Length = 481

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = -3

Query: 405 AVSVVVIFFPSITLACFIHLSLCESVMAFPSDLGSPNLENALKASLKDKAYPRFYWTFHW 226
           ++S  +I F SI +     +S C   +  PSD+    + N+  A L D+   + Y  F W
Sbjct: 216 SLSARIIAFISIAVIALSIISFCWETV--PSDIEEKPINNSATAELLDEMDEKHYSPFFW 273

Query: 225 M 223
           +
Sbjct: 274 I 274


>U53335-6|AAA96171.2|  518|Caenorhabditis elegans Hypothetical
           protein C55C3.5 protein.
          Length = 518

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -2

Query: 382 LSINNFGLFHPFVALRERDGFSIGLGISKFGKRLEGFLE 266
           ++++   LF+P +A + RD + I  GIS F      F E
Sbjct: 139 VTLSKCALFNPDIAFQLRDSWLINKGISAFSSMASSFFE 177


>Z68297-2|CAA92594.3|  522|Caenorhabditis elegans Hypothetical
           protein F11A10.3 protein.
          Length = 522

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 20/72 (27%), Positives = 31/72 (43%)
 Frame = +3

Query: 171 VTQEVKDVKLENGNAPGASNGTSSKSEDTPYLSRKPSRRFPNLEIPSPMEKPSRSRKATN 350
           V   V  VK+E  + P  +NG +      P   +KP       EI        ++R+   
Sbjct: 167 VVNSVSKVKIEKESTPVKTNGRNLP----PKRKKKPVEEETAEEIKLRERAERKARRIEE 222

Query: 351 G*NKPKLLMERK 386
             N+PKL +E+K
Sbjct: 223 AKNRPKLTIEQK 234


>U97010-1|AAB52322.1|  334|Caenorhabditis elegans Hypothetical
           protein W08A12.4 protein.
          Length = 334

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
 Frame = +2

Query: 356 KQAKVIDGKKITTTDTAIHFKKLKSVKLGIDDYQKFLDDLAKNKKVELDEIRRS*QLA-A 532
           + AK+ + +K    + AI   K ++ +   + Y  +LD L K K ++ DE  R+ ++   
Sbjct: 78  RSAKIENDRKNREDELAIETMKFENSQRNTEVYSPYLDSL-KEKSLKQDEQFRNNKIRFK 136

Query: 533 NRELPHTLQNHRQPQ 577
           N E+  TL+ ++Q Q
Sbjct: 137 NEEMDRTLK-YQQAQ 150


>Z92808-1|CAB07266.2|  606|Caenorhabditis elegans Hypothetical
           protein M04C3.2 protein.
          Length = 606

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/71 (22%), Positives = 30/71 (42%)
 Frame = +2

Query: 302 DPKSDGKAITLSQSDKWMKQAKVIDGKKITTTDTAIHFKKLKSVKLGIDDYQKFLDDLAK 481
           D +    A  +   + ++KQ  +   +       +I F K+   K   +DY+K + +  K
Sbjct: 418 DDEEKSTAKLVKNIEGFLKQVTLRFPRSCKLYKISIQFTKISIFKFSANDYEKHITNAKK 477

Query: 482 NKKVELDEIRR 514
            KK     IR+
Sbjct: 478 EKKENEPNIRK 488


>AC024812-4|AAF59550.1|  197|Caenorhabditis elegans Hypothetical
           protein Y54E10BR.6 protein.
          Length = 197

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -3

Query: 375 SITLACFIHLSLCESVMAFPSDLGSPNLENALKASL 268
           ++TL  F HLSL   V   P   G PNL   +K  L
Sbjct: 19  ALTLRMFFHLSLDHEVCLHPKYFG-PNLNETIKMKL 53


>Z81077-11|CAB03068.2|  244|Caenorhabditis elegans Hypothetical
           protein F36A2.11 protein.
          Length = 244

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +3

Query: 201 ENGNAPGASNGTSSKSEDTPYLSRKPSRRFPN 296
           E GN+ G ++GT +KSE  P    K  +RF N
Sbjct: 4   EGGNSNGGTSGTGTKSEQDP----KEGKRFFN 31


>Z81031-3|CAF31467.1|  455|Caenorhabditis elegans Hypothetical
           protein C02D4.2e protein.
          Length = 455

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +3

Query: 150 TDAAVEQVTQEVKDVKLENGNAPGASNGTSSKSEDTPYLSRKPSRRFPNLEI 305
           TD+  E V + +  ++    NA  A + T+    D P  S KP    P +E+
Sbjct: 6   TDSVQEMVLRAIDSIRDSVINASSAVSTTTLPPLDIPMTSMKPPSIIPTVEL 57


>Z81031-1|CAB02718.4|  432|Caenorhabditis elegans Hypothetical
           protein C02D4.2a protein.
          Length = 432

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +3

Query: 150 TDAAVEQVTQEVKDVKLENGNAPGASNGTSSKSEDTPYLSRKPSRRFPNLEI 305
           TD+  E V + +  ++    NA  A + T+    D P  S KP    P +E+
Sbjct: 6   TDSVQEMVLRAIDSIRDSVINASSAVSTTTLPPLDIPMTSMKPPSIIPTVEL 57


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,932,414
Number of Sequences: 27780
Number of extensions: 310815
Number of successful extensions: 1057
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1057
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)