Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021290
(656 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g20370.1 68418.m02423 serine-rich protein-related contains so... 33 0.22
At3g16340.1 68416.m02066 ABC transporter family protein similar ... 32 0.29
At4g22100.1 68417.m03195 glycosyl hydrolase family 1 protein con... 31 0.51
At5g28460.1 68418.m03456 pentatricopeptide (PPR) repeat-containi... 31 0.67
At5g28370.1 68418.m03445 pentatricopeptide (PPR) repeat-containi... 31 0.67
At3g61520.1 68416.m06890 pentatricopeptide (PPR) repeat-containi... 31 0.89
At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex... 31 0.89
At1g45191.2 68414.m05184 glycosyl hydrolase family 1 protein Sin... 31 0.89
At2g22795.1 68415.m02704 expressed protein 29 2.7
At1g77410.1 68414.m09015 beta-galactosidase, putative / lactase,... 29 2.7
At1g60090.1 68414.m06770 glycosyl hydrolase family 1 protein con... 29 2.7
At5g36230.1 68418.m04371 eIF4-gamma/eIF5/eIF2-epsilon domain-con... 29 3.6
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 29 3.6
At4g16280.1 68417.m02469 flowering time control protein / FCA ga... 29 3.6
At3g58260.1 68416.m06495 meprin and TRAF homology domain-contain... 29 3.6
At3g11720.1 68416.m01437 expressed protein 29 3.6
At1g65220.1 68414.m07394 eIF4-gamma/eIF5/eIF2-epsilon domain-con... 28 4.8
At4g37460.1 68417.m05302 tetratricopeptide repeat (TPR)-containi... 28 6.3
At1g10760.1 68414.m01231 starch excess protein (SEX1) identical ... 28 6.3
At5g50260.1 68418.m06224 cysteine proteinase, putative similar t... 27 8.3
At3g28720.1 68416.m03586 expressed protein 27 8.3
At1g47610.1 68414.m05288 transducin family protein / WD-40 repea... 27 8.3
At1g07540.1 68414.m00807 telomere-binding protein, putative simi... 27 8.3
>At5g20370.1 68418.m02423 serine-rich protein-related contains some
similarity to serine-rich proteins
Length = 175
Score = 32.7 bits (71), Expect = 0.22
Identities = 19/41 (46%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Frame = +2
Query: 464 LDDLAKNKKVELDEIRRS*QLAANRELPHTLQNHRQPQ-RP 583
++ LAK VE + RRS LAAN P +L +HR+P+ RP
Sbjct: 127 MNSLAKIGSVEAERFRRS--LAANLAKPSSLHSHRRPEFRP 165
>At3g16340.1 68416.m02066 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]; contains Pfam profile: PF00005 ABC
transporter
Length = 1416
Score = 32.3 bits (70), Expect = 0.29
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +2
Query: 347 KWMKQAKVIDGKKITTTDTAIHFKKLKSVKLGIDDYQKFLDDLAK 481
KW K+ ++ TT H + KLG+DD QKF+D + K
Sbjct: 41 KWAALEKLPTFARLRTTIIHPHEDLVDVTKLGVDDRQKFIDSIFK 85
>At4g22100.1 68417.m03195 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; similar to hydroxyisourate hydrolase
(GI:19569603) [Glycine max]; furostanol glycoside
26-O-beta-glucosidase F26G,Costus speciosus,
PATCHX:S78099
Length = 507
Score = 31.5 bits (68), Expect = 0.51
Identities = 21/70 (30%), Positives = 35/70 (50%)
Frame = +2
Query: 374 DGKKITTTDTAIHFKKLKSVKLGIDDYQKFLDDLAKNKKVELDEIRRS*QLAANRELPHT 553
DG+K + DT +H + L + + D Y K+ +D+ + LD R S ++ +R +P
Sbjct: 49 DGRKPSVWDTFLHTRNLSNGDITSDGYHKYKEDVKLMVETGLDAFRFS--ISWSRLIP-- 104
Query: 554 LQNHRQPQRP 583
N R P P
Sbjct: 105 --NGRGPVNP 112
>At5g28460.1 68418.m03456 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 766
Score = 31.1 bits (67), Expect = 0.67
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 6/85 (7%)
Frame = -1
Query: 368 LWL---VSSICRFARA*WLFHRTWDLQIWKTP*RLP*KIRRILAFTGRSIGCSRRVP-VL 201
+WL +SS+C+ ARA + DL KTP P +L+ GR++ SR VL
Sbjct: 260 VWLTRFISSLCKNARANTAWDILSDLMKNKTPLEAP-PFNALLSCLGRNMDISRMNDLVL 318
Query: 200 KLDVLDFLCHLLHSGIRI--LCFSR 132
K+D + ++ GI I LC SR
Sbjct: 319 KMDEVKIRPDVVTLGILINTLCKSR 343
>At5g28370.1 68418.m03445 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 727
Score = 31.1 bits (67), Expect = 0.67
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 6/85 (7%)
Frame = -1
Query: 368 LWL---VSSICRFARA*WLFHRTWDLQIWKTP*RLP*KIRRILAFTGRSIGCSRRVP-VL 201
+WL +SS+C+ ARA + DL KTP P +L+ GR++ SR VL
Sbjct: 260 VWLTRFISSLCKNARANTAWDILSDLMKNKTPLEAP-PFNALLSCLGRNMDISRMNDLVL 318
Query: 200 KLDVLDFLCHLLHSGIRI--LCFSR 132
K+D + ++ GI I LC SR
Sbjct: 319 KMDEVKIRPDVVTLGILINTLCKSR 343
>At3g61520.1 68416.m06890 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 766
Score = 30.7 bits (66), Expect = 0.89
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 6/85 (7%)
Frame = -1
Query: 368 LWL---VSSICRFARA*WLFHRTWDLQIWKTP*RLP*KIRRILAFTGRSIGCSRRVP-VL 201
+WL +SS+C+ ARA + DL KTP P +L+ GR++ SR VL
Sbjct: 260 VWLTRFISSLCKNARANAAWDILSDLMKNKTPLEAP-PFNALLSCLGRNMDISRMNDLVL 318
Query: 200 KLDVLDFLCHLLHSGIRI--LCFSR 132
K+D + ++ GI I LC SR
Sbjct: 319 KMDEVKIRPDVVTLGILINTLCKSR 343
>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
extensin family protein contains similarity to disease
resistance protein GI:3894383 from [Lycopersicon
esculentum]; contains leucine-rich repeats,
Pfam:PF00560; contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 847
Score = 30.7 bits (66), Expect = 0.89
Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Frame = +3
Query: 186 KDVKLENGNAPGASNGTSSKSEDTPYLSR-KPSRRFPNLEIPSPMEKPSRSRKATNG*NK 362
+ V G SNG SS S + P S KPS+ P + PS KP + K
Sbjct: 375 RPVDCSKDKCSGGSNGGSSPSPNPPRTSEPKPSKPEPVMPKPSDSSKPETPKTPEQPSPK 434
Query: 363 PK 368
P+
Sbjct: 435 PQ 436
>At1g45191.2 68414.m05184 glycosyl hydrolase family 1 protein Since
this genomic sequence region is unfinished, the
annotated gene may be missing a stop codon or start
codon
Length = 487
Score = 30.7 bits (66), Expect = 0.89
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +2
Query: 374 DGKKITTTDTAIHFKKLKSVKLGIDDYQKFLDDLAKNKKVELDEIRRS 517
DG+K + DT +H +K+ + + D Y K+ +D+ + L R S
Sbjct: 56 DGRKPSVWDTFLHCRKMDNGDIACDGYHKYKEDVQLMAETGLHTFRFS 103
>At2g22795.1 68415.m02704 expressed protein
Length = 734
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +3
Query: 135 TEAQNTDAAVEQVTQEVKDVKLENGNAPGASNGTSSKS 248
T+ Q+ ++ + QEVKDV+ + P + NG S++S
Sbjct: 693 TQEQSDSSSDTNLPQEVKDVRTDLETLPDSGNGGSNES 730
>At1g77410.1 68414.m09015 beta-galactosidase, putative / lactase,
putative similar to beta-galactosidase SP:P45582 from
[Asparagus officinalis]
Length = 815
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 94 HHTNTLNTYKEKCLLKHRIRMPLWSK 171
H N+L ++ CL K R +P+WSK
Sbjct: 769 HSPNSLAVVQKACLKKSRCSVPVWSK 794
>At1g60090.1 68414.m06770 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
similar to hydroxyisourate hydrolase (GI:19569603)
[Glycine max]
Length = 512
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +2
Query: 374 DGKKITTTDTAIHFKKLKSVKLGIDDYQKFLDDLAKNKKVELDEIRRS 517
DG+K + DT H + + + D Y K+ DD+ LD R S
Sbjct: 51 DGRKPSLWDTLCHSRDQGNGDIACDGYHKYKDDVKLMVDTNLDAFRFS 98
>At5g36230.1 68418.m04371 eIF4-gamma/eIF5/eIF2-epsilon
domain-containing protein low similarity to SP|Q13144
Translation initiation factor eIF-2B epsilon subunit
(eIF-2B GDP-GTP exchange factor) {Homo sapiens};
contains Pfam profile PF02020:
eIF4-gamma/eIF5/eIF2-epsilon
Length = 411
Score = 28.7 bits (61), Expect = 3.6
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 135 TEAQNTDAAVEQVTQEVKDVKL 200
TE N D +E V Q++KD KL
Sbjct: 265 TEESNVDEVIESVKQQIKDAKL 286
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 28.7 bits (61), Expect = 3.6
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +3
Query: 144 QNTDAAVEQVTQEVKDVKLENGNAPGASNGTSSKSE 251
Q++ A+ Q+ Q+V+ ++ N N P + NG + K +
Sbjct: 523 QSSQQAISQLQQQVQSMQQPNQNLPLSQNGRAGKQQ 558
>At4g16280.1 68417.m02469 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 505
Score = 28.7 bits (61), Expect = 3.6
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +3
Query: 144 QNTDAAVEQVTQEVKDVKLENGNAPGASNGTSSKSE 251
Q++ A+ Q+ Q+V+ ++ N N P + NG + K +
Sbjct: 281 QSSQQAISQLQQQVQSMQQPNQNLPLSQNGRAGKQQ 316
>At3g58260.1 68416.m06495 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein similar to
ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 321
Score = 28.7 bits (61), Expect = 3.6
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +2
Query: 422 LKSVKLGIDDYQKFLDDLAKNKKVELDEIR 511
+KSV +D +K LD+L + KK E D+IR
Sbjct: 226 MKSVGFKLDWLEKKLDELFEKKKEEADKIR 255
>At3g11720.1 68416.m01437 expressed protein
Length = 542
Score = 28.7 bits (61), Expect = 3.6
Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Frame = +3
Query: 162 VEQVTQE--VKDVKLENGNAPGASNGTSSKSED 254
V ++ +E V D+K EN ++P +S+ +SS SED
Sbjct: 348 VPEIEEEECVDDLKEENKSSPSSSSSSSSSSED 380
>At1g65220.1 68414.m07394 eIF4-gamma/eIF5/eIF2-epsilon
domain-containing protein low similarity to SP|P47823
Translation initiation factor eIF-2B epsilon subunit
(eIF-2B GDP-GTP exchange factor) {Oryctolagus
cuniculus}; contains Pfam profile PF02020:
eIF4-gamma/eIF5/eIF2-epsilon
Length = 411
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = +3
Query: 102 KYIKHL*RKMSTEAQNTDAAVEQVTQEVKDVKL 200
K IK + TE N D E V Q+VKD KL
Sbjct: 254 KEIKAVLTSQVTEEINVDEVTEMVKQQVKDAKL 286
>At4g37460.1 68417.m05302 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515: TPR Domain
Length = 883
Score = 27.9 bits (59), Expect = 6.3
Identities = 20/78 (25%), Positives = 37/78 (47%)
Frame = +3
Query: 15 GSISAATKSASLKRLSATDSLA*YMISSHKYIKHL*RKMSTEAQNTDAAVEQVTQEVKDV 194
G SA ++A +K+L + L + + + I + + +TE+ A + K
Sbjct: 99 GYKSALQQTADVKQLLELEEL---LKDARREIDGILKSHATESPQETPAYHSEKSDEKSD 155
Query: 195 KLENGNAPGASNGTSSKS 248
KL+N + +SNG S +S
Sbjct: 156 KLDNHESGASSNGNSHES 173
>At1g10760.1 68414.m01231 starch excess protein (SEX1) identical to
SEX1 [Arabidopsis thaliana] GI:12044358; supporting cDNA
gi|12044357|gb|AF312027.1|AF312027
Length = 1399
Score = 27.9 bits (59), Expect = 6.3
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +3
Query: 156 AAVEQVTQEVKDVKLENGNAPGASNGTSSKS-EDTPYLSRKPSRR 287
A+VE + K +K +N N SNGTSS E+ +S++P R+
Sbjct: 256 ASVEDL--RAKLLKKDNSNESPKSNGTSSSGREEKKKVSKQPERK 298
>At5g50260.1 68418.m06224 cysteine proteinase, putative similar to
cysteine endopeptidase precursor CysEP GI:2944446 from
[Ricinus communis]
Length = 361
Score = 27.5 bits (58), Expect = 8.3
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = +1
Query: 295 IWRSQVRWKSHHALAKRQMDETSQSY*WKENNNNGH 402
+W RW+SHH +A+ ++ + +K N + H
Sbjct: 34 LWELYERWRSHHTVARSLEEKAKRFNVFKHNVKHIH 69
>At3g28720.1 68416.m03586 expressed protein
Length = 687
Score = 27.5 bits (58), Expect = 8.3
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -1
Query: 467 LETSGSRRCRVLPI*VF*SE*PCPLLLFSFHQ 372
+E G+ RVLP+ VF + PLLL +HQ
Sbjct: 424 VEEEGNEFARVLPVYVFDLDINTPLLLDRYHQ 455
>At1g47610.1 68414.m05288 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to En/Spm-like transposon protein (GI:2739374)
[Arabidopsis thaliana]
Length = 351
Score = 27.5 bits (58), Expect = 8.3
Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +1
Query: 259 LIFQGSLQGVFQIWRSQVRWK-SHHALAKRQMDETS 363
L+F GS G ++W+ ++R K + H+L + + + S
Sbjct: 189 LVFTGSADGTVKVWKREIRGKRTAHSLFQTLLKQES 224
>At1g07540.1 68414.m00807 telomere-binding protein, putative similar
to telomere binding protein TBP1 [Nicotiana glutinosa]
gi|23664357|gb|AAN39330
Length = 622
Score = 27.5 bits (58), Expect = 8.3
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 198 LENGNAPGASNGTSSKSEDTPYLSRKP 278
LE GN+ +SN TS +ED + ++P
Sbjct: 55 LEGGNSSSSSNNTSGNNEDQCAVKKEP 81
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,065,029
Number of Sequences: 28952
Number of extensions: 288656
Number of successful extensions: 949
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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