Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021289
         (804 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces po...    28   1.4  
SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces ...    27   2.4  
SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    27   4.1  

>SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 451

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = -2

Query: 596 HHSARLERNTVRPPILSTAHRFRPTE*VMNNESSGFSATIAR--NDL 462
           + S RL   T+RP  L+ AH   P   ++NN S+    T  R  NDL
Sbjct: 50  NRSGRLGSVTMRPSALTRAHSQNPNSSLVNNSSAVSHLTKQRSLNDL 96


>SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 278

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 16/78 (20%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
 Frame = -2

Query: 692 DRCTAPVKLPAWQCPRTGSRGSFKRRRAFPPRHHSAR-LERNTVRPPILSTAHRFRPTE* 516
           D     + LP+ + P    +   K+ ++F P+HH  + +  ++ +P   +T      T+ 
Sbjct: 148 DESVIDIPLPSEEYPFEDPKPREKKNKSFKPKHHKKQDINASSAQPKSTTTTEAAANTKD 207

Query: 515 VMNNESSGFSATIARNDL 462
           +       +SA     DL
Sbjct: 208 IEEETMIEYSAQPVVRDL 225


>SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 492

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 448 CSISGRSFRAIVAEKPLLSLFITY 519
           C +  R +RA VA+  +L+L ITY
Sbjct: 99  CILDSREYRAQVADAQILNLAITY 122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,343,960
Number of Sequences: 5004
Number of extensions: 69444
Number of successful extensions: 166
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)