Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021289
         (804 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        28   0.12 
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   7.7  

>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 27.9 bits (59), Expect = 0.12
 Identities = 17/84 (20%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
 Frame = -3

Query: 775 GSSQLCPFAPREVSVLAELALGHLRYSLTDVPPQSNSPPGSVLEPDHAG-VLNGDERFRH 599
           G+ Q C  +P   S+ + L+   +  +  +   Q NSP  +   P H+G   +     R 
Sbjct: 25  GTIQACTTSPATASLESSLSAAAVAAAAVNYAQQHNSPSPTGSSPQHSGSSASTSPAART 84

Query: 598 VTTLHAWNETPCARRYYRPRTASA 527
            ++++ +     A  +++ + A A
Sbjct: 85  TSSMYPYVSAAAAHHHHQQQQAVA 108


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 486 SDDRAKRSPTYATPLMSPYNARLESSSTGSSFPADSP 376
           +D R   SP   TP+ + Y   +E+ +  S F  D+P
Sbjct: 21  NDKRIYLSPR--TPIKNVYKNNIETKNQLSPFNIDTP 55


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,725
Number of Sequences: 438
Number of extensions: 5382
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25489170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)