Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021288
(708 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 169 4e-43
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 169 4e-43
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 169 4e-43
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 101 1e-22
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 88 1e-18
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 73 3e-14
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p... 39 6e-04
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 38 0.001
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 36 0.004
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 36 0.006
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 36 0.006
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 36 0.006
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 31 0.12
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 30 0.28
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 29 0.49
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 29 0.49
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 28 1.5
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch... 27 2.0
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 27 3.5
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces... 27 3.5
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom... 27 3.5
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe... 26 4.6
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 26 6.1
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 25 8.0
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 169 bits (410), Expect = 4e-43
Identities = 77/81 (95%), Positives = 79/81 (97%)
Frame = +3
Query: 6 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 185
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 186 DKLKAERERGITIDIALWKFE 248
DKLKAERERGITIDIALWKFE
Sbjct: 61 DKLKAERERGITIDIALWKFE 81
Score = 144 bits (348), Expect = 1e-35
Identities = 68/86 (79%), Positives = 78/86 (90%)
Frame = +2
Query: 254 QYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTL 433
+Y VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GTGEFEAGISK+GQTREHALLA+TL
Sbjct: 84 KYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISKDGQTREHALLAYTL 143
Query: 434 GVKQLIVGVNKMDSTEPPYSEPRFEK 511
GVKQLIV VNKMD+T +S+ RFE+
Sbjct: 144 GVKQLIVAVNKMDTT--GWSQARFEE 167
Score = 99.5 bits (237), Expect = 4e-22
Identities = 41/71 (57%), Positives = 55/71 (77%)
Frame = +1
Query: 496 AQI*EIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKAD 675
A+ EI KE S++IKK+G+NP V FVP+SG+ GDNM+EP+T MPW++GWQ E K G
Sbjct: 163 ARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVVK 222
Query: 676 GKCLIEALDAI 708
GK L+EA+D+I
Sbjct: 223 GKTLLEAIDSI 233
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 169 bits (410), Expect = 4e-43
Identities = 77/81 (95%), Positives = 79/81 (97%)
Frame = +3
Query: 6 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 185
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 186 DKLKAERERGITIDIALWKFE 248
DKLKAERERGITIDIALWKFE
Sbjct: 61 DKLKAERERGITIDIALWKFE 81
Score = 144 bits (349), Expect = 1e-35
Identities = 69/86 (80%), Positives = 78/86 (90%)
Frame = +2
Query: 254 QYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTL 433
+Y VT+IDAPGHRDFIKNMITGTSQADCAVLI+ GTGEFEAGISK+GQTREHALLA+TL
Sbjct: 84 KYNVTVIDAPGHRDFIKNMITGTSQADCAVLIIGGGTGEFEAGISKDGQTREHALLAYTL 143
Query: 434 GVKQLIVGVNKMDSTEPPYSEPRFEK 511
GVKQLIV VNKMD+T +S+ RFE+
Sbjct: 144 GVKQLIVAVNKMDTT--GWSQARFEE 167
Score = 99.5 bits (237), Expect = 4e-22
Identities = 41/71 (57%), Positives = 55/71 (77%)
Frame = +1
Query: 496 AQI*EIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKAD 675
A+ EI KE S++IKK+G+NP V FVP+SG+ GDNM+EP+T MPW++GWQ E K G
Sbjct: 163 ARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVVK 222
Query: 676 GKCLIEALDAI 708
GK L+EA+D+I
Sbjct: 223 GKTLLEAIDSI 233
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 169 bits (410), Expect = 4e-43
Identities = 77/81 (95%), Positives = 79/81 (97%)
Frame = +3
Query: 6 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 185
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 186 DKLKAERERGITIDIALWKFE 248
DKLKAERERGITIDIALWKFE
Sbjct: 61 DKLKAERERGITIDIALWKFE 81
Score = 144 bits (348), Expect = 1e-35
Identities = 68/86 (79%), Positives = 78/86 (90%)
Frame = +2
Query: 254 QYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTL 433
+Y VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GTGEFEAGISK+GQTREHALLA+TL
Sbjct: 84 KYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISKDGQTREHALLAYTL 143
Query: 434 GVKQLIVGVNKMDSTEPPYSEPRFEK 511
GVKQLIV VNKMD+T +S+ RFE+
Sbjct: 144 GVKQLIVAVNKMDTT--GWSQARFEE 167
Score = 99.5 bits (237), Expect = 4e-22
Identities = 41/71 (57%), Positives = 55/71 (77%)
Frame = +1
Query: 496 AQI*EIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKAD 675
A+ EI KE S++IKK+G+NP V FVP+SG+ GDNM+EP+T MPW++GWQ E K G
Sbjct: 163 ARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVVK 222
Query: 676 GKCLIEALDAI 708
GK L+EA+D+I
Sbjct: 223 GKTLLEAIDSI 233
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 101 bits (242), Expect = 1e-22
Identities = 46/95 (48%), Positives = 65/95 (68%)
Frame = +2
Query: 266 TIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQ 445
+++DAPGH+ ++ NMI G SQAD VL+++A GEFEAG + GQTREHA+LA T G+
Sbjct: 319 SLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINH 378
Query: 446 LIVGVNKMDSTEPPYSEPRFEKSRRKYPHTSRRLA 550
L+V +NKMD +SE R+++ K RR+A
Sbjct: 379 LVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVA 413
Score = 89.4 bits (212), Expect = 4e-19
Identities = 39/77 (50%), Positives = 55/77 (71%)
Frame = +3
Query: 18 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 197
K H+NIV IGHVD+GKST G++++ G +DKRT+EK E+EA+E GK S+ +W LD
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTS 295
Query: 198 AERERGITIDIALWKFE 248
ERE+G T+++ FE
Sbjct: 296 EEREKGKTVEVGRAYFE 312
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 88.2 bits (209), Expect = 1e-18
Identities = 42/79 (53%), Positives = 53/79 (67%)
Frame = +2
Query: 275 DAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIV 454
DAPGHRDFI MI G S AD AVL+V + FE G +NGQTREHA L LG+ +++V
Sbjct: 261 DAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVV 320
Query: 455 GVNKMDSTEPPYSEPRFEK 511
VNK+D +SE RF++
Sbjct: 321 SVNKLDLMS--WSEDRFQE 337
Score = 87.8 bits (208), Expect = 1e-18
Identities = 38/77 (49%), Positives = 54/77 (70%)
Frame = +3
Query: 18 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 197
K +++VV GHVDSGKST G ++++ G I+ R+++K EA GKGSF YAW+LD +
Sbjct: 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTE 234
Query: 198 AERERGITIDIALWKFE 248
ER RG+T+D+A FE
Sbjct: 235 EERARGVTMDVASTTFE 251
Score = 35.9 bits (79), Expect = 0.006
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Frame = +1
Query: 508 EIKKEVSSY-IKKIGYNPAAVAFVPISGWHGDNML--EPSTKMPWFKG 642
EIK VS + IK +G+ + V FVPIS G N++ + S W+KG
Sbjct: 337 EIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKG 384
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 73.3 bits (172), Expect = 3e-14
Identities = 36/75 (48%), Positives = 49/75 (65%)
Frame = +2
Query: 272 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 451
+D PGH D+IKNMITG + D A+++V+A G+ QTREH LLA +GVKQ++
Sbjct: 121 VDCPGHADYIKNMITGAATMDGAIIVVSATDGQMP-------QTREHLLLARQVGVKQIV 173
Query: 452 VGVNKMDSTEPPYSE 496
V +NK+D EP E
Sbjct: 174 VYINKVDMVEPDMIE 188
Score = 41.9 bits (94), Expect = 9e-05
Identities = 29/79 (36%), Positives = 40/79 (50%)
Frame = +3
Query: 12 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 191
++K H+NI IGHVD GK+T T I KC ++G+ SF +DK
Sbjct: 49 RKKPHVNIGTIGHVDHGKTTLTA-AITKC--------------LSDLGQASFMDYSQIDK 93
Query: 192 LKAERERGITIDIALWKFE 248
E+ RGITI A ++E
Sbjct: 94 APEEKARGITISSAHVEYE 112
>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 704
Score = 39.1 bits (87), Expect = 6e-04
Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 4/105 (3%)
Frame = -3
Query: 397 TVLRDTSFEFTGTGSYDEHSAISLRGSCDHVL--DEIS--VSRSINDGNIVLLVSNFQRA 230
+V+ +T T ++ + +SL SC L DE S SRS N + S+ Q
Sbjct: 109 SVMNETDSSSTSVEDVNKENILSLNDSCLIKLSDDEASNKSSRSSTPRNSIKSNSSNQGH 168
Query: 229 ISIVIPRSRSAFSLSNTQAYLKDPLPISWASFSNFSMVRLSIPPH 95
I IP+ A S+ N++ + +D LP + S V+L +P H
Sbjct: 169 GDIPIPKKNPARSVCNSKLFNEDTLPAEFEEVSISPPVKLELPTH 213
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 38.3 bits (85), Expect = 0.001
Identities = 21/83 (25%), Positives = 38/83 (45%)
Frame = +2
Query: 260 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 439
+V+ +D PGH + M+ G + D A+L++A QT EH + +
Sbjct: 109 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMQL 162
Query: 440 KQLIVGVNKMDSTEPPYSEPRFE 508
K +I+ NK+D +E ++
Sbjct: 163 KHIIILQNKVDLIRESAAEEHYQ 185
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 36.3 bits (80), Expect = 0.004
Identities = 24/68 (35%), Positives = 36/68 (52%)
Frame = +3
Query: 30 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 209
NI + H+DSGK+T T ++Y G I K+ E+ +G +D ++ ERE
Sbjct: 61 NIGISAHIDSGKTTFTERVLYYTGRI---------KDIHEV-RGKDNVGAKMDFMELERE 110
Query: 210 RGITIDIA 233
+GITI A
Sbjct: 111 KGITIQSA 118
Score = 33.1 bits (72), Expect = 0.040
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = +2
Query: 257 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREH 412
Y + IID PGH DF + D AVL++ A +G I+ + Q R +
Sbjct: 145 YNINIIDTPGHIDFTIEVERALRVLDGAVLVLCAVSGVQSQTITVDRQMRRY 196
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 35.9 bits (79), Expect = 0.006
Identities = 28/73 (38%), Positives = 34/73 (46%)
Frame = +3
Query: 6 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 185
MGK N+ VI HVD GKST T L+ K G I A + G F +
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGII----------SAAKAGDARF-----M 57
Query: 186 DKLKAERERGITI 224
D E+ERG+TI
Sbjct: 58 DTRADEQERGVTI 70
Score = 27.9 bits (59), Expect = 1.5
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 257 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 352
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 35.9 bits (79), Expect = 0.006
Identities = 28/73 (38%), Positives = 34/73 (46%)
Frame = +3
Query: 6 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 185
MGK N+ VI HVD GKST T L+ K G I A + G F +
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGII----------SAAKAGDARF-----M 57
Query: 186 DKLKAERERGITI 224
D E+ERG+TI
Sbjct: 58 DTRADEQERGVTI 70
Score = 27.9 bits (59), Expect = 1.5
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 257 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 352
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 35.9 bits (79), Expect = 0.006
Identities = 25/72 (34%), Positives = 36/72 (50%)
Frame = +3
Query: 30 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 209
N+ +I H+D+GK+T T ++Y G F + G V+D L AER+
Sbjct: 30 NVGIIAHIDAGKTTLTEKMLYYGG---------FTSHFGNVDTGD----TVMDYLPAERQ 76
Query: 210 RGITIDIALWKF 245
RGITI+ A F
Sbjct: 77 RGITINSAAISF 88
Score = 29.1 bits (62), Expect = 0.65
Identities = 23/70 (32%), Positives = 34/70 (48%)
Frame = +2
Query: 263 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 442
+ +ID PGH DF + + D AV I+ + AG+ QT+ A G+
Sbjct: 95 INLIDTPGHADFTFEVERSVAVLDGAVAII-----DGSAGV--EAQTKVVWKQATKRGIP 147
Query: 443 QLIVGVNKMD 472
++I VNKMD
Sbjct: 148 KVIF-VNKMD 156
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 31.5 bits (68), Expect = 0.12
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 260 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 367
++T +D PGH F G + AD VL+VA G
Sbjct: 221 FITFLDTPGHMAFEAMRKRGANIADIVVLVVAGDDG 256
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 30.3 bits (65), Expect = 0.28
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 257 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 367
Y + +ID+PGH DF + + + D A ++V A G
Sbjct: 94 YLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEG 130
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 29.5 bits (63), Expect = 0.49
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 269 IIDAPGHRDFIKNMITGTSQADCAVLIV 352
IID PGH F GTS + A+L++
Sbjct: 553 IIDTPGHESFTNLRSRGTSLCNIAILVI 580
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 29.5 bits (63), Expect = 0.49
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 257 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 367
Y + +ID PGH DF ++ + + +L+V A G
Sbjct: 124 YLLNLIDTPGHVDFRAEVMHSLAACEGCILLVDASQG 160
Score = 29.1 bits (62), Expect = 0.65
Identities = 22/65 (33%), Positives = 31/65 (47%)
Frame = +3
Query: 30 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 209
N VI H+D GKST + ++ G I++ + F LDKL+ ER
Sbjct: 60 NWAVIAHIDHGKSTLSDCILKLTGVINEHNF-----------RNQF-----LDKLEVERR 103
Query: 210 RGITI 224
RGIT+
Sbjct: 104 RGITV 108
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 236 LEVRN*QYYVTIIDAPGHRDFIKN 307
LE +N +T+ID PG DFI N
Sbjct: 80 LEEKNFHLRLTVIDTPGFGDFINN 103
>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 487
Score = 27.5 bits (58), Expect = 2.0
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +3
Query: 462 TKWIPLNHHTVSPDLRNQEGSILI-HQEDWLQPSCCRFRAH 581
TK++ + H+ ++ L + ++I H ED L P+C RAH
Sbjct: 438 TKYVHMAHNYLNEKLSPSQAMVIISHYEDEL-PACVNRRAH 477
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 26.6 bits (56), Expect = 3.5
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 272 IDAPGHRDFIKNMITGTSQADCAVLIV 352
ID PGH DF+ + + +D VL+V
Sbjct: 214 IDTPGHVDFVDEVAAPMAISDGVVLVV 240
>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1009
Score = 26.6 bits (56), Expect = 3.5
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Frame = +2
Query: 470 DSTEPPYSEPRFEKSRRKYPHTSRRLATTQLL---SLSCPFLDGTETTCWSL 616
++ +P +++PR K+ K+P T ++ T QLL ++S +D E W +
Sbjct: 508 ETDQPSFTQPRMYKAIAKHPPTF-KIYTQQLLQEKTVSKAEVDAQEKRVWDI 558
>SPCC63.03 |||DNAJ domain protein, DNAJC11
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 642
Score = 26.6 bits (56), Expect = 3.5
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -3
Query: 247 SNFQRAISIVIPRSRSAFSLSNTQAYLKDPLPISWASFSNFSMV 116
S F IS+ +P FSL+ ++ K LPI W S + S V
Sbjct: 403 STFGVNISVGVPTGSITFSLNWSRLGQKISLPIMWCSVFDRSAV 446
>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 734
Score = 26.2 bits (55), Expect = 4.6
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = -1
Query: 519 LLDFSNLGSLYGGSVESILFTPTMSCLT-PRVKASKACSRV*PFLEIPASNSPVP 358
LL F+N G S + + + +S + R S +C+R+ P + +P S P P
Sbjct: 571 LLQFNNCLGGEGISYQDLKKSTELSDIDLTRTLQSLSCARIRPLVMVPKSKKPSP 625
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 25.8 bits (54), Expect = 6.1
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -1
Query: 213 HAHAQPLVCPIPKHI*RILYPFPGPPSRTSRWY 115
H+H PL P+P +L P P P S WY
Sbjct: 135 HSHHPPLHNPLPVSCQPVLRP-PPVPQVPSHWY 166
>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 662
Score = 25.4 bits (53), Expect = 8.0
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = -1
Query: 192 VCPIPKHI*RILYPFPGPPSRTSRWYVCQYHHICRSSDQWWWT 64
V +PK I I++ F P S S C+Y S D W T
Sbjct: 31 VLNLPKEILIIIFSFLDPRSLLSAQCTCKYWKKLLSDDLSWRT 73
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,958,098
Number of Sequences: 5004
Number of extensions: 61802
Number of successful extensions: 252
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 249
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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