Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021288
         (708 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)          103   1e-22
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)             103   1e-22
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)                97   1e-20
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                 75   8e-14
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               36   0.024
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)              35   0.056
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.098
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    32   0.40 
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)              30   2.1  
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)                     30   2.1  
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)               29   3.7  
SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5)                      29   4.9  
SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  

>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score =  103 bits (248), Expect = 1e-22
 Identities = 45/88 (51%), Positives = 64/88 (72%)
 Frame = +2

Query: 260 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 439
           + T++DAPGH+ F+ NMI+G +QAD  VL+++A  GEFE G  + GQTREHA+LA T GV
Sbjct: 223 HFTLLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGGQTREHAMLAKTAGV 282

Query: 440 KQLIVGVNKMDSTEPPYSEPRFEKSRRK 523
           K L++ VNKMD     ++E R+E+ + K
Sbjct: 283 KHLVILVNKMDDPTVKWNEERYEEIKVK 310



 Score = 51.2 bits (117), Expect = 8e-07
 Identities = 20/53 (37%), Positives = 36/53 (67%)
 Frame = +3

Query: 90  YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFE 248
           Y  G +DKRT+EK+E+EA+E  + ++  +W LD  + ER++G T+++    F+
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGNTVEVGRAAFD 218


>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score =  103 bits (247), Expect = 1e-22
 Identities = 46/70 (65%), Positives = 57/70 (81%)
 Frame = +2

Query: 263 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 442
           +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG    GQTREHA+L  +LGV 
Sbjct: 15  ITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQTREHAILVRSLGVT 74

Query: 443 QLIVGVNKMD 472
           QLIV +NK+D
Sbjct: 75  QLIVAINKLD 84


>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
          Length = 106

 Score = 97.1 bits (231), Expect = 1e-20
 Identities = 44/49 (89%), Positives = 46/49 (93%)
 Frame = +3

Query: 6   MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 152
           M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 1   MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49


>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score = 74.5 bits (175), Expect = 8e-14
 Identities = 33/33 (100%), Positives = 33/33 (100%)
 Frame = +3

Query: 150 MGKGSFKYAWVLDKLKAERERGITIDIALWKFE 248
           MGKGSFKYAWVLDKLKAERERGITIDIALWKFE
Sbjct: 1   MGKGSFKYAWVLDKLKAERERGITIDIALWKFE 33



 Score = 55.6 bits (128), Expect = 4e-08
 Identities = 23/25 (92%), Positives = 25/25 (100%)
 Frame = +2

Query: 254 QYYVTIIDAPGHRDFIKNMITGTSQ 328
           +YYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 36  KYYVTVIDAPGHRDFIKNMITGTSQ 60



 Score = 39.5 bits (88), Expect = 0.003
 Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 6/42 (14%)
 Frame = +1

Query: 601 NMLEPSTKMPWFKGWQVER------KEGKADGKCLIEALDAI 708
           NM+  +++MPWFK W +ER      KE  A G  L E LD+I
Sbjct: 53  NMITGTSQMPWFKQWTIERVDPATKKEANASGVTLFEGLDSI 94


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 36.3 bits (80), Expect = 0.024
 Identities = 25/65 (38%), Positives = 31/65 (47%)
 Frame = +3

Query: 30   NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 209
            N  ++ HVD GKST    L+   G I K +  K                 VLDKL+ ERE
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK----------------QVLDKLQVERE 1986

Query: 210  RGITI 224
            RGIT+
Sbjct: 1987 RGITV 1991


>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
          Length = 541

 Score = 35.1 bits (77), Expect = 0.056
 Identities = 18/80 (22%), Positives = 38/80 (47%)
 Frame = +2

Query: 272 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 451
           +D PGH   +  M+ G +  D A+L++A              QT EH      + +K ++
Sbjct: 69  VDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMKLKHIL 122

Query: 452 VGVNKMDSTEPPYSEPRFEK 511
           +  NK+D  +   ++ ++++
Sbjct: 123 ILQNKIDLVKESQAKDQYDQ 142


>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 34.3 bits (75), Expect = 0.098
 Identities = 24/70 (34%), Positives = 34/70 (48%)
 Frame = +2

Query: 263 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 442
           +T ID PGH  F      G +  D  VL+VAA  G      ++  ++  HA+ A      
Sbjct: 78  ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDGV----KTQTVESIRHAMHAKV---- 129

Query: 443 QLIVGVNKMD 472
            LIV +NK+D
Sbjct: 130 PLIVAINKID 139


>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = +3

Query: 6   MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 101
           M K+    N+ VI HVD GKST T  L+ K G
Sbjct: 12  MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAG 43



 Score = 28.3 bits (60), Expect = 6.5
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +2

Query: 257 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 367
           + + +ID+PGH DF   +       D A+++V   +G
Sbjct: 99  FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135


>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
          Length = 783

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 269 IIDAPGHRDFIKNMITGTSQADCAVLIV 352
           IID PGH  F      G+S  D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709


>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 359

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = +2

Query: 263 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 367
           + I+D PGH+DF ++     +  D  ++++    G
Sbjct: 81  INILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115



 Score = 29.1 bits (62), Expect = 3.7
 Identities = 20/69 (28%), Positives = 33/69 (47%)
 Frame = +3

Query: 39  VIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGI 218
           +I H D+GK+T T  L+   G I         +EA  +     K     D ++ ER+RGI
Sbjct: 15  IISHPDAGKTTLTEKLLLFGGAI---------QEAGAVKSNKIKKGATSDFMEIERQRGI 65

Query: 219 TIDIALWKF 245
           ++  ++  F
Sbjct: 66  SVATSVLAF 74


>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +3

Query: 21  THINIVVIGHVDSGKSTTTGHLIY 92
           T I + V+G+V+SGKST  G L Y
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTY 134


>SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1229

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = -2

Query: 215 TTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 75
           TT+T S     YPS+   +  +F        D T  N TT V  +T+
Sbjct: 236 TTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPSITA 282


>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
          Length = 240

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 20/70 (28%), Positives = 29/70 (41%)
 Frame = +2

Query: 263 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 442
           +  +D PGH  F      G    D  +++VAA             QT+E    A   GV 
Sbjct: 140 IAFLDTPGHEAFTAMRARGAQVTDLVIIVVAADDDVMP-------QTKEAISHAQAAGV- 191

Query: 443 QLIVGVNKMD 472
            +I  +NK+D
Sbjct: 192 PIIFAINKID 201


>SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5)
          Length = 737

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = -2

Query: 224 DCDTTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 75
           D  TT+T S     YPS+   +  +F        D T  N TT V  +++
Sbjct: 344 DFPTTITPSPNITSYPSLMTSAVGNFTSAKSVVFDSTTPNATTLVPSISA 393



 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = -2

Query: 215 TTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 75
           TT+T S     YPS+   +  +F        D T  N TT V  +++
Sbjct: 548 TTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVQSISA 594


>SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 476

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +1

Query: 589 WHGDNMLEPSTKMPWFKGWQVERKE 663
           +H DN    +   PWF+ W  +++E
Sbjct: 191 YHNDNKTHSTQTGPWFRAWSNQKRE 215


>SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 919

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 645 PSLEPRHFG*RLQHVVSVPSRNGHESDSSWVVANLLD 535
           P+LEP + G  L  + S  S  GH+ D+   ++ LL+
Sbjct: 378 PNLEPSYIGKMLATIESTLSAKGHQEDAEEFLSCLLN 414


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,448,316
Number of Sequences: 59808
Number of extensions: 479554
Number of successful extensions: 1412
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1407
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)