Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021287
(750 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q6AW71 Cluster: RNA-dependent RNA polymerase; n=1; Bomb... 222 8e-57
UniRef50_P20126 Cluster: RNA replicase polyprotein; n=3; Tymovir... 115 1e-24
UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; ... 112 1e-23
UniRef50_P20127 Cluster: RNA replicase polyprotein; n=11; Tymovi... 111 1e-23
UniRef50_Q91TW9 Cluster: Polyprotein; n=25; Marafivirus|Rep: Pol... 110 3e-23
UniRef50_P36304 Cluster: RNA replicase polyprotein; n=2; Tymovir... 107 2e-22
UniRef50_Q32WC7 Cluster: Replicase; n=1; Dulcamara mottle virus|... 106 7e-22
UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden death-a... 100 3e-20
UniRef50_Q0IKR9 Cluster: Polyprotein; n=8; Tymoviridae|Rep: Poly... 100 4e-20
UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10; Tym... 99 6e-20
UniRef50_P10358 Cluster: RNA replicase polyprotein; n=8; Tymovir... 98 2e-19
UniRef50_P35928 Cluster: RNA replicase polyprotein; n=2; Erysimu... 95 2e-18
UniRef50_Q8UZB6 Cluster: Replicase; n=5; Grapevine fleck virus|R... 80 7e-14
UniRef50_Q65979 Cluster: Brazilian strain defective RNA, complet... 57 4e-07
UniRef50_Q9DRA1 Cluster: Replicase; n=1; Botrytis virus F|Rep: R... 56 1e-06
UniRef50_Q6UNI1 Cluster: Replication-associated protein; n=4; Po... 56 1e-06
UniRef50_P15095 Cluster: RNA replication protein (186 kDa protei... 54 5e-06
UniRef50_Q8BF56 Cluster: RNA-dependent RNA polymerase; n=3; root... 52 1e-05
UniRef50_O55597 Cluster: Replicase; n=1; Garlic virus A|Rep: Rep... 51 4e-05
UniRef50_Q07518 Cluster: RNA replication protein (156 kDa protei... 50 6e-05
UniRef50_O55601 Cluster: Replicase; n=4; Allexivirus|Rep: Replic... 48 2e-04
UniRef50_Q3MLL0 Cluster: Putative movement protein; n=1; Nemesia... 47 6e-04
UniRef50_Q04575 Cluster: RNA replication protein (194 kDa protei... 46 8e-04
UniRef50_Q0Z8V5 Cluster: ORF 1; n=1; Chenopodium mosaic virus X|... 46 0.001
UniRef50_O37153 Cluster: RNA replicase; n=18; Cymbidium mosaic v... 45 0.002
UniRef50_P20951 Cluster: RNA replication protein (176 kDa protei... 45 0.002
UniRef50_Q2V0S0 Cluster: Replicase protein; n=2; Nerine virus X|... 44 0.003
UniRef50_Q66339 Cluster: Non-structural/coat protein fusion prod... 43 0.009
UniRef50_O91259 Cluster: Overlapping protein; n=1; Physalis mott... 43 0.009
UniRef50_A5JPL2 Cluster: Putative movement protein; n=1; Okra mo... 42 0.016
UniRef50_Q65005 Cluster: ORF1=155k; n=10; Bamboo mosaic virus|Re... 42 0.021
UniRef50_P79950 Cluster: Tyrosine kinase receptor; n=3; Xenopus|... 41 0.028
UniRef50_Q6YI57 Cluster: Polyprotein; n=1; Sclerotinia sclerotio... 41 0.028
UniRef50_Q993S7 Cluster: RNA-dependant RNA polymerase; n=74; Ban... 40 0.049
UniRef50_Q918W3 Cluster: Putative RNA-dependent RNA polymerase R... 40 0.065
UniRef50_P09395 Cluster: RNA replication protein (165 kDa protei... 38 0.20
UniRef50_Q5GR28 Cluster: Replicase; n=1; Hosta virus X|Rep: Repl... 38 0.26
UniRef50_Q1DSG8 Cluster: Putative uncharacterized protein; n=1; ... 37 0.61
UniRef50_Q4Q2P2 Cluster: Protein kinase, putative; n=3; Leishman... 36 0.81
UniRef50_A6SKK9 Cluster: Putative uncharacterized protein; n=2; ... 36 0.81
UniRef50_Q3BD97 Cluster: Putative movement protein; n=1; Plantag... 36 1.1
UniRef50_Q5FSM3 Cluster: NADPH-dependent L-sorbose reductase; n=... 36 1.1
UniRef50_P20129 Cluster: 70 kDa protein; n=1; Eggplant mosaic vi... 36 1.4
UniRef50_Q32WC8 Cluster: Overlapping protein p62; n=1; Dulcamara... 35 1.9
UniRef50_P28897 Cluster: RNA replication protein (150 kDa protei... 35 1.9
UniRef50_P22168 Cluster: RNA replication protein (152 kDa protei... 35 1.9
UniRef50_Q59PR6 Cluster: Putative uncharacterized protein; n=1; ... 34 4.3
UniRef50_Q5K4J4 Cluster: RNA-directed RNA polymerase; n=154; Pep... 33 5.7
UniRef50_Q22WD6 Cluster: Putative uncharacterized protein; n=1; ... 33 5.7
UniRef50_A5A9V2 Cluster: Huntingtin like protein; n=2; Ciona int... 33 5.7
UniRef50_Q5BE57 Cluster: Putative uncharacterized protein; n=1; ... 33 5.7
UniRef50_A6R238 Cluster: Predicted protein; n=1; Ajellomyces cap... 33 5.7
UniRef50_P15402 Cluster: RNA replication protein (147 kDa protei... 33 5.7
UniRef50_Q6YNQ7 Cluster: 158kDa replicase; n=1; Botrytis virus X... 33 7.5
UniRef50_Q9VRT5 Cluster: CG6602-PA; n=3; Sophophora|Rep: CG6602-... 33 7.5
UniRef50_Q6IJR9 Cluster: HDC14379; n=1; Drosophila melanogaster|... 33 7.5
UniRef50_Q5CHK1 Cluster: Asparagine-rich protein; n=2; Cryptospo... 33 7.5
UniRef50_UPI00006A1CCB Cluster: DENN/MADD domain containing 4B.;... 33 9.9
UniRef50_Q8CDV4 Cluster: Adult male testis cDNA, RIKEN full-leng... 33 9.9
UniRef50_A6PS51 Cluster: Putative uncharacterized protein precur... 33 9.9
UniRef50_Q9VCM2 Cluster: CG4374-PA; n=1; Drosophila melanogaster... 33 9.9
UniRef50_Q1DWD6 Cluster: Putative uncharacterized protein; n=1; ... 33 9.9
>UniRef50_Q6AW71 Cluster: RNA-dependent RNA polymerase; n=1; Bombyx
mori Macula-like latent virus|Rep: RNA-dependent RNA
polymerase - Bombyx mori Macula-like latent virus
Length = 1747
Score = 222 bits (542), Expect = 8e-57
Identities = 117/168 (69%), Positives = 126/168 (75%), Gaps = 3/168 (1%)
Frame = +3
Query: 255 LFEHWNHLARVPSTVMYMKPEKFQKLQQLNPNFASLINFRHTPKDITRYPVSNPHPVETE 434
LFEHWNHLARVPSTVMYMKPEKFQKLQQLNPNFASLINFRHTPKDITRYPVSNPHPVETE
Sbjct: 78 LFEHWNHLARVPSTVMYMKPEKFQKLQQLNPNFASLINFRHTPKDITRYPVSNPHPVETE 137
Query: 435 VAFMHDALMFITPSQILGLFKDSPS*PHSIVLS*SLPKPL---MECLHSSLISTATQSKM 605
VAFMHDALMFITPSQILGLFKDSPS S+ S +P + L L S +
Sbjct: 138 VAFMHDALMFITPSQILGLFKDSPS-MTSLYCSLIVPAEAAYGVPSLFPDLYSYTIKDDQ 196
Query: 606 ISWCTLLEGNATGNYTQPLRSLDWLRAQVFHQATFIYLSLYLNPSFPS 749
+ + LEGNATGNYTQPLRSLDWLR ++LS+ L SF S
Sbjct: 197 LVY--TLEGNATGNYTQPLRSLDWLRRSGISSGD-LHLSVTLLESFVS 241
Score = 164 bits (399), Expect = 2e-39
Identities = 77/77 (100%), Positives = 77/77 (100%)
Frame = +1
Query: 25 MAFTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLIPLLNQLGIGVTSY 204
MAFTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLIPLLNQLGIGVTSY
Sbjct: 1 MAFTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLIPLLNQLGIGVTSY 60
Query: 205 GTSPHPHAAHKAIETHL 255
GTSPHPHAAHKAIETHL
Sbjct: 61 GTSPHPHAAHKAIETHL 77
Score = 119 bits (286), Expect = 9e-26
Identities = 62/86 (72%), Positives = 63/86 (73%)
Frame = +2
Query: 491 FQGLPFMTSLYCSLIVPAEAAYGVPSLFPDLYSYTIKDDQLVYTSRRKCYRQLHSTSPFF 670
F+ P MTSLYCSLIVPAEAAYGVPSLFPDLYSYTIKDDQLVYT
Sbjct: 157 FKDSPSMTSLYCSLIVPAEAAYGVPSLFPDLYSYTIKDDQLVYTLEGNATGNYTQPLRSL 216
Query: 671 GLAPRSGISSGDLHLSVTLLESFVSV 748
RSGISSGDLHLSVTLLESFVSV
Sbjct: 217 DWLRRSGISSGDLHLSVTLLESFVSV 242
>UniRef50_P20126 Cluster: RNA replicase polyprotein; n=3;
Tymovirus|Rep: RNA replicase polyprotein - Eggplant
mosaic virus
Length = 1839
Score = 115 bits (276), Expect = 1e-24
Identities = 67/146 (45%), Positives = 87/146 (59%), Gaps = 3/146 (2%)
Frame = +3
Query: 255 LFEHWNHLARVPSTVMYMKPEKFQKLQQLNPNFASLINFRHTPKDITRYPVSNPHPVETE 434
LF HW+ LAR+PSTVM+MKP KFQKL LNP F LINFR T D TRYP ++
Sbjct: 78 LFNHWHALARLPSTVMFMKPSKFQKLAALNPKFQELINFRLTAADTTRYPSTSLTFPSNS 137
Query: 435 VAFMHDALMFITPSQILGLFKDSPS*PHSIVLS*SLPKPLMECLHSSLISTATQSKMISW 614
+ FMHDALM+ +P+QI+ LF SP+ ++ S +P P SL K IS
Sbjct: 138 ICFMHDALMYFSPAQIVDLFTQSPA-LETLYCSLIVP-PESHFTDLSLFPEIYTYK-ISG 194
Query: 615 CTL---LEGNATGNYTQPLRSLDWLR 683
TL E + +G+Y QPL++ WL+
Sbjct: 195 QTLHYIPENHHSGSYNQPLQAPSWLK 220
Score = 70.5 bits (165), Expect = 4e-11
Identities = 31/80 (38%), Positives = 46/80 (57%)
Frame = +1
Query: 25 MAFTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLIPLLNQLGIGVTSY 204
MAF + ++ L +T HRDA T P++ + + R L LYP+ + + +P L GI +
Sbjct: 1 MAFQSALEALNSTTHRDASTNPILNSVVEPLRDSLSLYPWLLPKEAVPHLLSWGIPNSGL 60
Query: 205 GTSPHPHAAHKAIETHLCLN 264
G +PHPH HK +ET L N
Sbjct: 61 GVTPHPHPIHKTVETFLLFN 80
>UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; Oat
blue dwarf virus|Rep: Replicase-associated polyprotein -
Oat blue dwarf virus
Length = 2066
Score = 112 bits (269), Expect = 1e-23
Identities = 64/146 (43%), Positives = 84/146 (57%), Gaps = 3/146 (2%)
Frame = +3
Query: 255 LFEHWNHLARVPSTVMYMKPEKFQKLQQLNPNFASLINFRHTPKDITRYPVSNPHPVETE 434
L + W H A+VPS+V++MKP KF KLQ+ N NF++L N+R T KD RYP ++ +TE
Sbjct: 99 LHKVWPHYAQVPSSVLFMKPSKFAKLQRGNANFSALHNYRLTAKDTPRYPNTSTSLPDTE 158
Query: 435 VAFMHDALMFITPSQILGLFKDSPS*PHSIVLS*SLPKP---LMECLHSSLISTATQSKM 605
AFMHDALM+ TP+QI+ LF P + S +P LH L
Sbjct: 159 TAFMHDALMYYTPAQIVDLFLSCPK-LEKLYASLVVPPESSFTSISLHPDLYRFRFDGDR 217
Query: 606 ISWCTLLEGNATGNYTQPLRSLDWLR 683
+ + LEGN NYTQP +LDWLR
Sbjct: 218 LIY--ELEGNPAHNYTQPRSALDWLR 241
Score = 81.4 bits (192), Expect = 2e-14
Identities = 36/84 (42%), Positives = 52/84 (61%)
Frame = +1
Query: 4 SLASALSMAFTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLIPLLNQL 183
S A+ ++++TL++TIHRD I APL+ET S +R L+ +P+ V + +P L +
Sbjct: 15 SFATITGGGLKDVIETLSSTIHRDTIAAPLMETLASPYRDSLRDFPWAVPASALPFLQEC 74
Query: 184 GIGVTSYGTSPHPHAAHKAIETHL 255
GI V +G HPH HK IETHL
Sbjct: 75 GITVAGHGFKAHPHPVHKTIETHL 98
Score = 41.9 bits (94), Expect = 0.016
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +2
Query: 491 FQGLPFMTSLYCSLIVPAEAAYGVPSLFPDLYSYTIKDDQLVY 619
F P + LY SL+VP E+++ SL PDLY + D+L+Y
Sbjct: 178 FLSCPKLEKLYASLVVPPESSFTSISLHPDLYRFRFDGDRLIY 220
>UniRef50_P20127 Cluster: RNA replicase polyprotein; n=11;
Tymovirus|Rep: RNA replicase polyprotein - Ononis yellow
mosaic virus
Length = 1776
Score = 111 bits (268), Expect = 1e-23
Identities = 58/150 (38%), Positives = 85/150 (56%), Gaps = 2/150 (1%)
Frame = +3
Query: 255 LFEHWNHLARVPSTVMYMKPEKFQKLQQLNPNFASLINFRHTPKDITRYPVSNPHPVETE 434
LF HW+ +A V ++VM+MKP KF+KL +NPNF+ L+N+R T D RYP ++ + E
Sbjct: 78 LFNHWSFMATVQASVMFMKPSKFKKLASVNPNFSELVNYRLTAADSVRYPSTSTSLPKYE 137
Query: 435 VAFMHDALMFITPSQILGLFKDSPS*P--HSIVLS*SLPKPLMECLHSSLISTATQSKMI 608
+ FMHDALM+ PSQIL LF PS H ++ LH +L + +
Sbjct: 138 IVFMHDALMYFNPSQILDLFIQCPSLQRLHCSLVVPPESSFTDLSLHPNLYTYTISGNTL 197
Query: 609 SWCTLLEGNATGNYTQPLRSLDWLRAQVFH 698
+ + EG+ G+Y QPL ++ WL+ H
Sbjct: 198 HY--VPEGHHAGSYDQPLDAISWLKLNSIH 225
Score = 67.7 bits (158), Expect = 3e-10
Identities = 29/80 (36%), Positives = 48/80 (60%)
Frame = +1
Query: 25 MAFTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLIPLLNQLGIGVTSY 204
MAF ++ LA++ H+D+ P++ +A+ + LQ +P+ + + +P L GI + +
Sbjct: 1 MAFELALNALASSTHKDSSLNPVLNSAVQPLQTSLQNFPWIIGKEHLPFLLAAGIPTSGF 60
Query: 205 GTSPHPHAAHKAIETHLCLN 264
G +PHPHA HK IET L N
Sbjct: 61 GCNPHPHAVHKVIETFLLFN 80
>UniRef50_Q91TW9 Cluster: Polyprotein; n=25; Marafivirus|Rep:
Polyprotein - Maize rayado fino virus
Length = 2027
Score = 110 bits (265), Expect = 3e-23
Identities = 65/150 (43%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Frame = +3
Query: 255 LFEHWNHLARVPSTVMYMKPEKFQKLQQLNPNFASLINFRHTPKDITRYPVSNPHPVETE 434
L + W + AR PS VM++KPEKF KLQ PNFA LIN+R PKD TRYP ++ + + E
Sbjct: 85 LLDVWPNYARGPSDVMFIKPEKFAKLQSRQPNFAHLINYRLVPKDTTRYPSTSTNLPDCE 144
Query: 435 VAFMHDALMFITPSQILGLFKDSPS*PHSIVLS*SLPKP---LMECLHSSLISTATQSKM 605
FMHDALM+ TP QI LF P I S +P LH + Q
Sbjct: 145 TVFMHDALMYYTPGQIADLFFLCPQ-LQKIYASVVVPAESSFTHLSLHPEIYRFRFQGSD 203
Query: 606 ISWCTLLEGNATGNYTQPLRSLDWLRAQVF 695
+ + EGN NYTQP +LDWL+ F
Sbjct: 204 LVYEP--EGNPAANYTQPRSALDWLQTTGF 231
Score = 74.1 bits (174), Expect = 3e-12
Identities = 30/75 (40%), Positives = 47/75 (62%)
Frame = +1
Query: 43 VDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLIPLLNQLGIGVTSYGTSPHP 222
V++L T HRD ITAP+VE+ + R L+ YP+ + + L+ G+ ++ +G + HP
Sbjct: 14 VESLTPTTHRDTITAPIVESLATPLRRSLERYPWSIPKEFHSFLHTCGVDISGFGHAAHP 73
Query: 223 HAAHKAIETHLCLNI 267
H HK IETHL L++
Sbjct: 74 HPVHKTIETHLLLDV 88
>UniRef50_P36304 Cluster: RNA replicase polyprotein; n=2;
Tymovirus|Rep: RNA replicase polyprotein - Kennedya
yellow mosaic virus (strain Jervis bay) (KYMV)
Length = 1874
Score = 107 bits (258), Expect = 2e-22
Identities = 62/146 (42%), Positives = 81/146 (55%), Gaps = 3/146 (2%)
Frame = +3
Query: 255 LFEHWNHLARVPSTVMYMKPEKFQKLQQLNPNFASLINFRHTPKDITRYPVSNPHPVETE 434
LF HW HL PS+V++MKP+KF KLQ+ N F L N+R TP D R+P ++PH T
Sbjct: 78 LFTHWMHLCTQPSSVLFMKPQKFMKLQRKNKFFQHLHNYRLTPTDSVRFPSTSPHLPNTP 137
Query: 435 VAFMHDALMFITPSQILGLFKDSPS*PHSIVLS*SLPKPLMECLHSSL---ISTATQSKM 605
FMHDALM+ P QIL LF P ++ S P P H SL + T T
Sbjct: 138 FVFMHDALMYYQPEQILHLFHQVPQ-LTNLFCSLVTP-PESHFTHLSLMPDLYTFTLKGQ 195
Query: 606 ISWCTLLEGNATGNYTQPLRSLDWLR 683
T EG++ G+Y QP+ +L WL+
Sbjct: 196 TLHYT-PEGHSAGSYNQPITALSWLK 220
Score = 77.4 bits (182), Expect = 4e-13
Identities = 35/77 (45%), Positives = 48/77 (62%)
Frame = +1
Query: 25 MAFTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLIPLLNQLGIGVTSY 204
MAF +D LA+T H+D P++E+ + LQ YP+ V L P L + GI + S+
Sbjct: 1 MAFQLALDALASTSHKDPSLHPVLESVHDSLTDSLQTYPWMVPQDLQPFLLKSGIPINSF 60
Query: 205 GTSPHPHAAHKAIETHL 255
G+SPHPH AHK +ETHL
Sbjct: 61 GSSPHPHPAHKTLETHL 77
Score = 56.0 bits (129), Expect = 9e-07
Identities = 29/83 (34%), Positives = 46/83 (55%)
Frame = +2
Query: 491 FQGLPFMTSLYCSLIVPAEAAYGVPSLFPDLYSYTIKDDQLVYTSRRKCYRQLHSTSPFF 670
F +P +T+L+CSL+ P E+ + SL PDLY++T+K L YT +
Sbjct: 157 FHQVPQLTNLFCSLVTPPESHFTHLSLMPDLYTFTLKGQTLHYTPEGHSAGSYNQPITAL 216
Query: 671 GLAPRSGISSGDLHLSVTLLESF 739
+ I S +L+LS+T+LES+
Sbjct: 217 SWLKINSILSPNLNLSITILESW 239
>UniRef50_Q32WC7 Cluster: Replicase; n=1; Dulcamara mottle
virus|Rep: Replicase - Dulcamara mottle virus
Length = 1742
Score = 106 bits (254), Expect = 7e-22
Identities = 58/146 (39%), Positives = 82/146 (56%), Gaps = 3/146 (2%)
Frame = +3
Query: 255 LFEHWNHLARVPSTVMYMKPEKFQKLQQLNPNFASLINFRHTPKDITRYPVSNPHPVETE 434
L +HW+ L PSTV++MKP KFQKLQ+ NPNF L N+R T D RYP ++ TE
Sbjct: 78 LHQHWSFLCVTPSTVLFMKPSKFQKLQRKNPNFQELKNYRLTSSDTVRYPTTSTTLPTTE 137
Query: 435 VAFMHDALMFITPSQILGLFKDSPS*PHSIVLS*SLPKPLM---ECLHSSLISTATQSKM 605
FM DALM+ PSQI LF SP+ + S +P LH + + +
Sbjct: 138 SVFMQDALMYFHPSQICDLFLKSPN-IQKLFCSLVIPPESSFTDLSLHPEIYTYQISGQT 196
Query: 606 ISWCTLLEGNATGNYTQPLRSLDWLR 683
+ + + E +++G+Y QPL +L WL+
Sbjct: 197 LHY--VPENHSSGSYNQPLSALSWLK 220
Score = 74.9 bits (176), Expect = 2e-12
Identities = 30/77 (38%), Positives = 49/77 (63%)
Frame = +1
Query: 25 MAFTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLIPLLNQLGIGVTSY 204
MAF + ++ L +T HRDA++ P++ + + + L+ YP+ + + +P LN GI +S+
Sbjct: 1 MAFQSALEALNSTTHRDAVSHPILTSVVRPLQDSLETYPWLLPKEALPFLNNQGIPASSF 60
Query: 205 GTSPHPHAAHKAIETHL 255
GT PHPH HK +ET L
Sbjct: 61 GTMPHPHPIHKTLETFL 77
>UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden
death-associated virus|Rep: Polyprotein - Citrus sudden
death-associated virus
Length = 2189
Score = 100 bits (240), Expect = 3e-20
Identities = 57/141 (40%), Positives = 78/141 (55%), Gaps = 2/141 (1%)
Frame = +3
Query: 267 WNHLARVPSTVMYMKPEKFQKLQQLNPNFASLINFRHTPKDITRYPVSNPHPVETEVAFM 446
W+H A PS VM+MKP KF+KL+ PNF+ L N+R T KD TRYP ++P + FM
Sbjct: 170 WSHYATTPSGVMFMKPSKFEKLRIKQPNFSKLYNYRITAKDSTRYPSTSPDLPTEDTCFM 229
Query: 447 HDALMFITPSQILGLFKDSPS*PHSIVLS*SLPKPLMECLHSSLISTATQSKMISWCTL- 623
HDALM+ +P QI LF PS + S +P P + SL + ++ +
Sbjct: 230 HDALMYYSPGQICDLFISRPS-LQKLYASLVVP-PESDFTTISLFPDLYRYRIEKDQLVY 287
Query: 624 -LEGNATGNYTQPLRSLDWLR 683
LE N NY QP ++DWL+
Sbjct: 288 ELEQNPAHNYIQPRSAIDWLK 308
Score = 67.3 bits (157), Expect = 4e-10
Identities = 30/73 (41%), Positives = 38/73 (52%)
Frame = +1
Query: 49 TLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLIPLLNQLGIGVTSYGTSPHPHA 228
+LA T HRD I PL+E +R L YP+ + + L P L GI G HPH
Sbjct: 97 SLAPTTHRDTIATPLMEALAEPYRQSLSTYPWHIPTNLQPFLTSCGITTAGQGFKAHPHP 156
Query: 229 AHKAIETHLCLNI 267
HK IET+L N+
Sbjct: 157 VHKTIETNLLSNV 169
>UniRef50_Q0IKR9 Cluster: Polyprotein; n=8; Tymoviridae|Rep:
Polyprotein - Grapevine rupestris vein feathering virus
Length = 2068
Score = 100 bits (239), Expect = 4e-20
Identities = 59/160 (36%), Positives = 85/160 (53%), Gaps = 3/160 (1%)
Frame = +3
Query: 255 LFEHWNHLARVPSTVMYMKPEKFQKLQQLNPNFASLINFRHTPKDITRYPVSNPHPVETE 434
LFEHW L R PS+V++MKP KF KLQ N NFA L N+ +DITRYP ++P P E
Sbjct: 209 LFEHWMGLCRQPSSVLFMKPSKFSKLQARNNNFAELCNYSLVARDITRYPETSPTPPECS 268
Query: 435 VAFMHDALMFITPSQILGLFKDSPS*PHSIVLS*SLPKPLMECLHSSLISTATQSKMISW 614
FMHD++M+++ ++ G F+ + PH L SL P ++ +
Sbjct: 269 TWFMHDSIMYLSAEEVAGCFQ---ACPHLERLYASLIVPPESSFTDLSLNPSLYRYRFHG 325
Query: 615 CTL---LEGNATGNYTQPLRSLDWLRAQVFHQATFIYLSL 725
L LE N + +Y QP +L WL+ Q I+L++
Sbjct: 326 DQLIYRLEENPSHSYQQPKAALKWLQTNSI-QGNDIFLAI 364
Score = 72.9 bits (171), Expect = 8e-12
Identities = 33/72 (45%), Positives = 40/72 (55%)
Frame = +1
Query: 40 LVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLIPLLNQLGIGVTSYGTSPH 219
LV+ L T+HRD + +PLVE A R LQLYPY + + L GI + YG H
Sbjct: 137 LVEILNPTVHRDTVCSPLVEAAAGPLRDSLQLYPYDIPQEHAKFLQTCGIQASGYGYKTH 196
Query: 220 PHAAHKAIETHL 255
PH HK IE HL
Sbjct: 197 PHPVHKTIEIHL 208
Score = 52.0 bits (119), Expect = 2e-05
Identities = 28/83 (33%), Positives = 38/83 (45%)
Frame = +2
Query: 491 FQGLPFMTSLYCSLIVPAEAAYGVPSLFPDLYSYTIKDDQLVYTSRRKCYRQLHSTSPFF 670
FQ P + LY SLIVP E+++ SL P LY Y DQL+Y
Sbjct: 288 FQACPHLERLYASLIVPPESSFTDLSLNPSLYRYRFHGDQLIYRLEENPSHSYQQPKAAL 347
Query: 671 GLAPRSGISSGDLHLSVTLLESF 739
+ I D+ L++T LES+
Sbjct: 348 KWLQTNSIQGNDIFLAITRLESW 370
>UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10;
Tymoviridae|Rep: Replicase-associated protein -
Poinsettia mosaic virus
Length = 1987
Score = 99 bits (238), Expect = 6e-20
Identities = 61/154 (39%), Positives = 80/154 (51%), Gaps = 2/154 (1%)
Frame = +3
Query: 255 LFEHWNHLARVPSTVMYMKPEKFQKLQQLNPNFASLINFRHTPKDITRYPVSNPHPVETE 434
LF+HW+H R STV++MKPEKFQKL NP+F L+N+R KD TR+P + T
Sbjct: 78 LFQHWSHNCREDSTVLFMKPEKFQKLASFNPHFKHLLNYRLHAKDTTRFPETACSLPTTS 137
Query: 435 VAFMHDALMFITPSQILGLFKDSPS*PHSIVLS*SLPKPLMECLHSSLISTATQSKMI-- 608
FMHDAL + PSQI+ LF P+ +S+ S +P H SL Q K I
Sbjct: 138 TVFMHDALTYYKPSQIMDLFLRIPN-LNSLYASVVVPAESSFTDH-SLYPEVYQYKTIRS 195
Query: 609 SWCTLLEGNATGNYTQPLRSLDWLRAQVFHQATF 710
+ E N + Y QP +L WL +F
Sbjct: 196 HLHYVPESNHSSAYNQPADALLWLELSTIQGPSF 229
Score = 81.0 bits (191), Expect = 3e-14
Identities = 34/77 (44%), Positives = 50/77 (64%)
Frame = +1
Query: 25 MAFTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLIPLLNQLGIGVTSY 204
MAF + + L++T+HRD + APL+E+ R L+LYP+ +N++ + LL + GI V+
Sbjct: 1 MAFQDAFNNLSSTVHRDTVAAPLLESIAQPLRDSLELYPWAINAEKLDLLKKFGISVSGL 60
Query: 205 GTSPHPHAAHKAIETHL 255
G HPH HK IETHL
Sbjct: 61 GHQAHPHPFHKIIETHL 77
>UniRef50_P10358 Cluster: RNA replicase polyprotein; n=8;
Tymovirus|Rep: RNA replicase polyprotein - Turnip yellow
mosaic virus
Length = 1844
Score = 97.9 bits (233), Expect = 2e-19
Identities = 55/145 (37%), Positives = 76/145 (52%), Gaps = 2/145 (1%)
Frame = +3
Query: 255 LFEHWNHLARVPSTVMYMKPEKFQKLQQLNPNFASLINFRHTPKDITRYPVSNPHPVETE 434
L HW+ A PS+VM+MKP KF KL Q+N NF L N+R P D TRYP ++P
Sbjct: 78 LCTHWSFQATTPSSVMFMKPSKFNKLAQVNSNFRELKNYRLHPNDSTRYPFTSPDLPVFP 137
Query: 435 VAFMHDALMFITPSQILGLFKDSPS*PHSIVLS*SLPKPLM--ECLHSSLISTATQSKMI 608
FMHDALM+ PSQI+ LF P+ P+ + + + L + T +
Sbjct: 138 TIFMHDALMYYHPSQIMDLFLRKPNLERLYASLVVPPEAHLSDQSFYPKLYTYTTTRHTL 197
Query: 609 SWCTLLEGNATGNYTQPLRSLDWLR 683
+ + EG+ G+Y QP + WLR
Sbjct: 198 HY--VPEGHEAGSYNQPSDAHSWLR 220
Score = 83.0 bits (196), Expect = 7e-15
Identities = 37/77 (48%), Positives = 49/77 (63%)
Frame = +1
Query: 25 MAFTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLIPLLNQLGIGVTSY 204
MAF +D LA T HRD P++E+ + + R +Q YP+ + +L+PLLN GI +
Sbjct: 1 MAFQLALDALAPTTHRDPSLHPILESTVDSIRSSIQTYPWSIPKELLPLLNSYGIPTSGL 60
Query: 205 GTSPHPHAAHKAIETHL 255
GTS HPHAAHK IET L
Sbjct: 61 GTSHHPHAAHKTIETFL 77
Score = 45.6 bits (103), Expect = 0.001
Identities = 28/79 (35%), Positives = 37/79 (46%)
Frame = +2
Query: 503 PFMTSLYCSLIVPAEAAYGVPSLFPDLYSYTIKDDQLVYTSRRKCYRQLHSTSPFFGLAP 682
P + LY SL+VP EA S +P LY+YT L Y + S
Sbjct: 161 PNLERLYASLVVPPEAHLSDQSFYPKLYTYTTTRHTLHYVPEGHEAGSYNQPSDAHSWLR 220
Query: 683 RSGISSGDLHLSVTLLESF 739
+ I G+ HLSVT+LES+
Sbjct: 221 INSIRLGNHHLSVTILESW 239
>UniRef50_P35928 Cluster: RNA replicase polyprotein; n=2; Erysimum
latent virus|Rep: RNA replicase polyprotein - Erysimum
latent virus (ELV)
Length = 1748
Score = 95.1 bits (226), Expect = 2e-18
Identities = 59/147 (40%), Positives = 80/147 (54%), Gaps = 4/147 (2%)
Frame = +3
Query: 255 LFEHWNHLARVPSTVMYMKPEKFQKLQQLNPNFASLINFRHTPKDITRYP-VSNPHPVET 431
LF HW V S V++MKP KF KLQ+ N +F SL N+R P D RYP S P E
Sbjct: 78 LFNHWAKSCNVDSAVVFMKPSKFFKLQEKNSHFKSLHNYRLHPHDSNRYPHPSTSLPTEK 137
Query: 432 EVAFMHDALMFITPSQILGLFKDSPS*PHSIVLS*SLPKPLMECLHSSLISTATQSKMIS 611
++HD+LM+ TP QI GLF+ S P+ + L SL P + ++ I
Sbjct: 138 RF-YIHDSLMYFTPHQISGLFE---SCPNLLSLYASLVVPPESSMTDLSLNPDLYRYSIH 193
Query: 612 WCTL---LEGNATGNYTQPLRSLDWLR 683
TL EG++ G+Y QP+ +LDWL+
Sbjct: 194 KSTLHYTPEGHSAGSYNQPVNALDWLK 220
Score = 89.4 bits (212), Expect = 8e-17
Identities = 37/80 (46%), Positives = 59/80 (73%)
Frame = +1
Query: 25 MAFTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLIPLLNQLGIGVTSY 204
MAF +D L++T HRD+I+APL+++++S + L+L+PY V +L+P LN++GI V+
Sbjct: 1 MAFQLALDALSSTTHRDSISAPLLDSSVSQLQSSLELFPYTVPKELVPQLNRMGIQVSGL 60
Query: 205 GTSPHPHAAHKAIETHLCLN 264
++PHPHAAHK +E +L N
Sbjct: 61 TSTPHPHAAHKTLELNLLFN 80
>UniRef50_Q8UZB6 Cluster: Replicase; n=5; Grapevine fleck virus|Rep:
Replicase - Grapevine fleck virus
Length = 1949
Score = 79.8 bits (188), Expect = 7e-14
Identities = 59/155 (38%), Positives = 80/155 (51%), Gaps = 13/155 (8%)
Frame = +3
Query: 255 LFEHWNHLARVPSTVMYMKPEKFQKLQQLN-------PNFASLINFRHTPKDITRY---P 404
L EHW + A +PSTVM+MK KF KL+ N NF L+N T +D RY P
Sbjct: 191 LHEHWANRATLPSTVMFMKRSKFDKLRVSNAALVKSASNFLHLLNPILTARDADRYTHLP 250
Query: 405 VSNPHPVETEVAFMHDALMFITPSQILGLFKDSPS*PHSIVLS*SLPKPLMECLH---SS 575
+ + P T + FMH +LM+ +PSQI GLF +P + S LP H S
Sbjct: 251 LPDTLP-STPLYFMHHSLMYFSPSQIAGLFLAAPF-LERLYASLVLPAESTIGSHPFFPS 308
Query: 576 LISTATQSKMISWCTLLEGNATGNYTQPLRSLDWL 680
L T + + + +LEGN + +YTQPL + WL
Sbjct: 309 LYRYRTTGEHLHY--VLEGNPSSSYTQPLTATQWL 341
Score = 68.9 bits (161), Expect = 1e-10
Identities = 33/76 (43%), Positives = 41/76 (53%)
Frame = +1
Query: 28 AFTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLIPLLNQLGIGVTSYG 207
AF +D L NTI +D I + ++ + L LYPY + + LNQ GI TSYG
Sbjct: 115 AFQPAIDFLHNTIQKDTIASSIIAALNPSLTSSLTLYPYALPPRWPSALNQAGIPATSYG 174
Query: 208 TSPHPHAAHKAIETHL 255
HPH HK IETHL
Sbjct: 175 HQSHPHPIHKTIETHL 190
Score = 58.0 bits (134), Expect = 2e-07
Identities = 32/86 (37%), Positives = 42/86 (48%)
Frame = +2
Query: 491 FQGLPFMTSLYCSLIVPAEAAYGVPSLFPDLYSYTIKDDQLVYTSRRKCYRQLHSTSPFF 670
F PF+ LY SL++PAE+ G FP LY Y + L Y
Sbjct: 279 FLAAPFLERLYASLVLPAESTIGSHPFFPSLYRYRTTGEHLHYVLEGNPSSSYTQPLTAT 338
Query: 671 GLAPRSGISSGDLHLSVTLLESFVSV 748
S I++GDLHL+VT+LES+ SV
Sbjct: 339 QWLTTSSITAGDLHLTVTVLESWFSV 364
>UniRef50_Q65979 Cluster: Brazilian strain defective RNA, complete
sequence; n=2; Cassava common mosaic virus|Rep:
Brazilian strain defective RNA, complete sequence -
Cassava common mosaic virus
Length = 300
Score = 57.2 bits (132), Expect = 4e-07
Identities = 43/136 (31%), Positives = 62/136 (45%), Gaps = 5/136 (3%)
Frame = +3
Query: 288 PSTVMYMKPEKFQKLQQLNPNFASLINFRHTPKDITRYP----VSNPHPVETEVAFMHDA 455
P T M+MKP K Q L++ + +N PKD+ RYP V P++T +AFM D
Sbjct: 91 PVTFMFMKPAKLQYLRRGPQHRDHFVNSWVEPKDLARYPEQTVVDGIPPIQTSIAFMGDT 150
Query: 456 LMFITPSQILGLFKDSPS*PHSIVLS*SLPKPLMECLHSSLISTAT-QSKMISWCTLLEG 632
L F+TP + LF SP + + LP + ++S T Q K + G
Sbjct: 151 LHFLTPKFVGTLFARSPK-LKTFYATMVLPPEALHKMNSLYPQIYTLQYKEKGFIYTPGG 209
Query: 633 NATGNYTQPLRSLDWL 680
+A +Y L WL
Sbjct: 210 HAGASYYHEYSQLGWL 225
Score = 36.7 bits (81), Expect = 0.61
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = +2
Query: 461 VHYPFPNF--RPFQGLPFMTSLYCSLIVPAEAAYGVPSLFPDLYSYTIKDDQLVYT 622
+H+ P F F P + + Y ++++P EA + + SL+P +Y+ K+ +YT
Sbjct: 151 LHFLTPKFVGTLFARSPKLKTFYATMVLPPEALHKMNSLYPQIYTLQYKEKGFIYT 206
Score = 33.5 bits (73), Expect = 5.7
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +1
Query: 139 PYQVNSKLIPLLNQLGIGVTSYGTSPHPHAAHKAIETHLCLNIGIILP 282
PY + LL LG+ Y + H HAA KA+E L ++ LP
Sbjct: 40 PYAQTGEAADLLETLGVITHPYAIATHTHAAGKALELDLYHSVSHYLP 87
>UniRef50_Q9DRA1 Cluster: Replicase; n=1; Botrytis virus F|Rep:
Replicase - Botrytis virus F
Length = 1896
Score = 55.6 bits (128), Expect = 1e-06
Identities = 44/143 (30%), Positives = 65/143 (45%), Gaps = 9/143 (6%)
Frame = +3
Query: 309 KPEKFQKLQ-QLNPNFASLI--NFRHTPKDITRYP---VSNPHPVETEVAFMHDALMFIT 470
K F+KLQ Q++ +L N+ T +D RYP V +P FMHDAL ++T
Sbjct: 98 KDNWFRKLQAQIDSQTTTLTHRNYAITARDHVRYPGTVVDHPGSCTAGTLFMHDALQYMT 157
Query: 471 PSQILGLFKDSPS*PHSIVLS*SLPKPLMECLHS---SLISTATQSKMISWCTLLEGNAT 641
P + LF SP HS+V + +P ++ L + L A + C +GN
Sbjct: 158 PLDVYTLFATSPE-MHSLVATAVIPPESVDRLPAFWPELYQLAYYEDHL--CYAPDGNFA 214
Query: 642 GNYTQPLRSLDWLRAQVFHQATF 710
Y QPL + W+ + H F
Sbjct: 215 DAYNQPLAAHQWMTMKSLHGPDF 237
Score = 33.9 bits (74), Expect = 4.3
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +2
Query: 470 PFPNFRPFQGLPFMTSLYCSLIVPAEAAYGVPSLFPDLYSYTIKDDQLVY 619
P + F P M SL + ++P E+ +P+ +P+LY +D L Y
Sbjct: 158 PLDVYTLFATSPEMHSLVATAVIPPESVDRLPAFWPELYQLAYYEDHLCY 207
>UniRef50_Q6UNI1 Cluster: Replication-associated protein; n=4;
Potexvirus|Rep: Replication-associated protein - Opuntia
virus X
Length = 1555
Score = 55.6 bits (128), Expect = 1e-06
Identities = 47/146 (32%), Positives = 63/146 (43%), Gaps = 10/146 (6%)
Frame = +3
Query: 273 HLARVPSTVMYMKPEKFQKLQQLNPNFASLINFRHTPKDITRYPVS------NPHPVETE 434
HL + P T YMKP K K ++ + IN PKDI RYP P T
Sbjct: 85 HLPKEPVTFYYMKPGKLGKFRRGPQHKDKFINSLFEPKDIARYPEETVVKHLEESPCSTS 144
Query: 435 VAFMHDALMFITPSQILGLFKDSPS*PHSIVLS*SLPKPLME---CLHSSLISTA-TQSK 602
AFM D L F P Q++ LF+ SP ++ + LP M LH + S T++
Sbjct: 145 NAFMGDTLHFFKPEQLMTLFRLSPK-LKTLYATLVLPAEAMHELPSLHPHIYSLKYTKNH 203
Query: 603 MISWCTLLEGNATGNYTQPLRSLDWL 680
I + G+A +Y L WL
Sbjct: 204 FI---YMPGGHAGASYVHSREQLAWL 226
Score = 41.1 bits (92), Expect = 0.028
Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 1/110 (0%)
Frame = +2
Query: 410 QPSSCRN*SSVHARRSHVHYPFPNFRPFQGLPFMTSLYCSLIVPAEAAYGVPSLFPDLYS 589
+ S C ++ H P F+ P + +LY +L++PAEA + +PSL P +YS
Sbjct: 137 EESPCSTSNAFMGDTLHFFKPEQLMTLFRLSPKLKTLYATLVLPAEAMHELPSLHPHIYS 196
Query: 590 YTIKDDQLVY-TSRRKCYRQLHSTSPFFGLAPRSGISSGDLHLSVTLLES 736
+ +Y +HS L ++ G++ L+ LLES
Sbjct: 197 LKYTKNHFIYMPGGHAGASYVHSREQLAWLL-IGKLTQGNMQLTFQLLES 245
Score = 34.7 bits (76), Expect = 2.5
Identities = 19/59 (32%), Positives = 26/59 (44%)
Frame = +1
Query: 109 SNFRHKLQLYPYQVNSKLIPLLNQLGIGVTSYGTSPHPHAAHKAIETHLCLNIGIILPE 285
+ R + PY +++ L LGI Y H HAA KAIE L + LP+
Sbjct: 30 TQMRQATVVNPYALSTDAADALENLGIITNPYSIQLHTHAAAKAIENDLYNTVAYHLPK 88
>UniRef50_P15095 Cluster: RNA replication protein (186 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=5;
Potexvirus|Rep: RNA replication protein (186 kDa
protein) (ORF 1 protein) [Includes: RNA-directed RNA
polymerase (EC 2.7.7.48); Helicase (EC 3.6.1.-)] -
Narcissus mosaic virus (NMV)
Length = 1643
Score = 53.6 bits (123), Expect = 5e-06
Identities = 42/158 (26%), Positives = 79/158 (50%), Gaps = 8/158 (5%)
Frame = +3
Query: 273 HLARVPSTVMYMKPEKFQKLQQLNPNFASLINFRHTPKDITRYPV----SNPHPVETEVA 440
HL + T++++K K + +++ +N PKD+ RY S ++T++A
Sbjct: 85 HLPKHSCTMLFLKRSKLRYMRRAAILKDVFLNKDVEPKDLFRYDRDTIRSRLQDIDTKIA 144
Query: 441 FMHDALMFITPSQILGLFKDSPS*PHSIVLS*SLPKPLME---CLHSSLISTATQSKMIS 611
+M D L F++ +I+ LF+DSP +++ + LP + L+ SL S +K
Sbjct: 145 YMSDTLHFMSRREIVQLFEDSPK-LETLLATVVLPVEALHKRTSLYPSLYSINYSAKGFE 203
Query: 612 WCTLLEGN-ATGNYTQPLRSLDWLRAQVFHQATFIYLS 722
+ + GN G+Y P +L+WL+ ++ + F LS
Sbjct: 204 Y---IPGNHGGGSYFHPYTTLEWLKVRMINAEDFHKLS 238
Score = 35.5 bits (78), Expect = 1.4
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +1
Query: 139 PYQVNSKLIPLLNQLGIGVTSYGTSPHPHAAHKAIETHLCLNIGIILPE 285
PY +++ L GI V Y H HAA K IE + +G+ LP+
Sbjct: 40 PYALSNDEADCLESFGITVNPYANQTHTHAACKVIENRMLEIVGMHLPK 88
>UniRef50_Q8BF56 Cluster: RNA-dependent RNA polymerase; n=3;
root|Rep: RNA-dependent RNA polymerase - Tulip virus X
Length = 1361
Score = 52.4 bits (120), Expect = 1e-05
Identities = 46/154 (29%), Positives = 68/154 (44%), Gaps = 8/154 (5%)
Frame = +3
Query: 249 SPLFEHWNHLA--RVPSTVMYMKPEKFQKLQQLNPNFASLINFRHTPKDITRYP----VS 410
S L+E +H P T ++MKP K + + + +N PKD+ RYP +
Sbjct: 76 SDLYEVTSHYLPKENPVTFLFMKPSKLRYFHRGPQHSDIFLNAYIEPKDVPRYPTDTVIE 135
Query: 411 NPHPVETEVAFMHDALMFITPSQILGLFKDSPS*PHSIVLS*SLPKPLMECLHSSL--IS 584
N + T +AFM D L F+ PS I LF SP ++ + LP + L S +
Sbjct: 136 NISEITTPLAFMGDTLHFLEPSFITSLFARSPK-LQTLYATMVLPPEALYRLRSLYPEVY 194
Query: 585 TATQSKMISWCTLLEGNATGNYTQPLRSLDWLRA 686
T T S + + G+A +Y L WL A
Sbjct: 195 TLTYSD-DGFMYIPGGHAGASYYHKYDQLQWLTA 227
Score = 42.7 bits (96), Expect = 0.009
Identities = 19/55 (34%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Frame = +2
Query: 461 VHYPFPNFRP--FQGLPFMTSLYCSLIVPAEAAYGVPSLFPDLYSYTIKDDQLVY 619
+H+ P+F F P + +LY ++++P EA Y + SL+P++Y+ T DD +Y
Sbjct: 151 LHFLEPSFITSLFARSPKLQTLYATMVLPPEALYRLRSLYPEVYTLTYSDDGFMY 205
>UniRef50_O55597 Cluster: Replicase; n=1; Garlic virus A|Rep:
Replicase - Garlic virus A
Length = 1625
Score = 50.8 bits (116), Expect = 4e-05
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Frame = +3
Query: 294 TVMYMKPEKFQKLQQLNPNFASLINFRHTPKDITRYPVSNPH---PVETEVAFMHDALMF 464
T++ +K K L + NPN N+ + PKD+ RY ++NP+ V+TE A + D L F
Sbjct: 93 TLIQLKRGKLHLLGR-NPNLDRFQNYCYEPKDVLRYGLTNPNSCPKVDTEYAVLADTLHF 151
Query: 465 ITPSQILGLFKDSP 506
++P Q+ LF +P
Sbjct: 152 MSPKQLYTLFSKNP 165
Score = 39.5 bits (88), Expect = 0.086
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Frame = +2
Query: 413 PSSCRN*SSVHARRSH-VHYPFPN--FRPFQGLPFMTSLYCSLIVPAEAAYGVPSLFPDL 583
P+SC + +A + +H+ P + F P + L+ +L++P EA + +PSLFPD+
Sbjct: 132 PNSCPKVDTEYAVLADTLHFMSPKQLYTLFSKNPKLERLFATLVLPIEALHKLPSLFPDV 191
Query: 584 YSYTIKDDQLVY 619
Y D Y
Sbjct: 192 YKLEYYKDHFSY 203
Score = 37.5 bits (83), Expect = 0.35
Identities = 23/86 (26%), Positives = 39/86 (45%)
Frame = +1
Query: 28 AFTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLIPLLNQLGIGVTSYG 207
A L D +++ + + E A + + L + P+ V + L ++GI + +
Sbjct: 3 AVQKLFDQISDPNTKAGYSNACFEAAQNASKKALAIAPFSVTNPEALTLERIGITTSPFA 62
Query: 208 TSPHPHAAHKAIETHLCLNIGIILPE 285
T+ H HAA K IE IG LP+
Sbjct: 63 TTSHTHAADKIIENDCLSIIGHYLPK 88
>UniRef50_Q07518 Cluster: RNA replication protein (156 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=4;
Potexvirus|Rep: RNA replication protein (156 kDa
protein) (ORF 1 protein) [Includes: RNA-directed RNA
polymerase (EC 2.7.7.48); Helicase (EC 3.6.1.-)] -
Plantago asiatica mosaic potexvirus (P1AMV)
Length = 1385
Score = 50.0 bits (114), Expect = 6e-05
Identities = 37/135 (27%), Positives = 60/135 (44%), Gaps = 4/135 (2%)
Frame = +3
Query: 288 PSTVMYMKPEKFQKLQQLNPNFASLINFRHTPKDITRYP----VSNPHPVETEVAFMHDA 455
P + ++MKP K + + + +N PKD+ RYP ++ + T++AFM D
Sbjct: 91 PVSFLFMKPAKLRFFHRGPTHGDHFLNAHVEPKDVPRYPQETIINRLADIPTQIAFMGDT 150
Query: 456 LMFITPSQILGLFKDSPS*PHSIVLS*SLPKPLMECLHSSLISTATQSKMISWCTLLEGN 635
L F++PS + LF SP P+P I T T S+ + + G+
Sbjct: 151 LHFLSPSFLTALFAHSPRLQTLYATLVLPPEPSTSRSLYPQIYTLTYSE-DGFMYIPGGH 209
Query: 636 ATGNYTQPLRSLDWL 680
A +Y L+WL
Sbjct: 210 AGASYFHKYDQLEWL 224
>UniRef50_O55601 Cluster: Replicase; n=4; Allexivirus|Rep: Replicase
- Garlic virus C
Length = 1550
Score = 48.0 bits (109), Expect = 2e-04
Identities = 26/83 (31%), Positives = 46/83 (55%), Gaps = 3/83 (3%)
Frame = +3
Query: 270 NHLARVPSTVMYMKPEKFQKLQQLNPNFASLINFRHTPKDITRYPVSNPH---PVETEVA 440
++L + P T++ +K K L++ P + N+ H PKD+ R+ ++NPH V T A
Sbjct: 84 HYLPKDPITLIQLKRSKLHLLKR-GPTDDAFQNYCHEPKDVLRFGLTNPHTCPTVTTSCA 142
Query: 441 FMHDALMFITPSQILGLFKDSPS 509
+ D L F++ Q+ LF +P+
Sbjct: 143 VISDTLHFMSSQQLWTLFARNPA 165
Score = 39.9 bits (89), Expect = 0.065
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Frame = +2
Query: 503 PFMTSLYCSLIVPAEAAYGVPSLFPDLYSYTIKDDQLVY-TSRRKCYRQLHSTSPFFGLA 679
P + LY +L++P EA + +PSLFP++Y D Y +HS L+
Sbjct: 164 PALQRLYGTLVLPVEALHKLPSLFPEIYKLEYYDKHFAYMPGGHGGGAYIHSYGTLKWLS 223
Query: 680 PRSGISSGDLHLSVTLLES 736
+ I SG HLS+ +E+
Sbjct: 224 -TAQIGSGLNHLSIEKIET 241
Score = 36.3 bits (80), Expect = 0.81
Identities = 22/76 (28%), Positives = 36/76 (47%)
Frame = +1
Query: 40 LVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLIPLLNQLGIGVTSYGTSPH 219
L+D +++ R A + + A + + + PY V L ++GI + + T+ H
Sbjct: 7 LLDQISDPNARAAYSQECLSAAKNAATKAMTIAPYAVTQTEALTLERIGITTSPFATTSH 66
Query: 220 PHAAHKAIETHLCLNI 267
HAA K IE CL I
Sbjct: 67 THAADKIIEND-CLEI 81
>UniRef50_Q3MLL0 Cluster: Putative movement protein; n=1; Nemesia
ring necrosis virus|Rep: Putative movement protein -
Nemesia ring necrosis virus
Length = 632
Score = 46.8 bits (106), Expect = 6e-04
Identities = 30/80 (37%), Positives = 42/80 (52%)
Frame = +2
Query: 266 LESSCQSSFYGNVYET*EIPKTSAIKPKLCFPH*LQAHPKGHHSVPR*QPSSCRN*SSVH 445
LE S S +VYET ++ +T +PKL H L +H + H S+P S + +H
Sbjct: 84 LELSSLHSQLRHVYETIKVSQTGGHQPKLRRTHQLSSHSRRHRSLPHHFLLSPPARNRLH 143
Query: 446 ARRSHVHYPFPNFRPFQGLP 505
ARR+ V Y N R F+ LP
Sbjct: 144 ARRADVLYAASNRRSFRTLP 163
>UniRef50_Q04575 Cluster: RNA replication protein (194 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=4;
Allexivirus|Rep: RNA replication protein (194 kDa
protein) (ORF 1 protein) [Includes: RNA-directed RNA
polymerase (EC 2.7.7.48); Helicase (EC 3.6.1.-)] -
Shallot virus X (ShVX)
Length = 1718
Score = 46.4 bits (105), Expect = 8e-04
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Frame = +3
Query: 294 TVMYMKPEKFQKLQQLNPNFASLINFRHTPKDITRYPVSNPHP---VETEVAFMHDALMF 464
T++ +K K L + P+ + N+ H PKD+ RY +++P+ V TE A + D L F
Sbjct: 93 TLIQLKRSKIHLLGR-QPSQDNFQNYCHEPKDVLRYGITHPNSCPVVNTEYAVLADTLHF 151
Query: 465 ITPSQILGLFKDSP 506
++P Q+ LF +P
Sbjct: 152 MSPRQLYHLFSRNP 165
Score = 39.5 bits (88), Expect = 0.086
Identities = 20/61 (32%), Positives = 30/61 (49%)
Frame = +2
Query: 437 SVHARRSHVHYPFPNFRPFQGLPFMTSLYCSLIVPAEAAYGVPSLFPDLYSYTIKDDQLV 616
+V A H P + F P + L+ +L++P EA + +PSLFPD+Y D
Sbjct: 143 AVLADTLHFMSPRQLYHLFSRNPKLERLFATLVLPIEAQHRLPSLFPDVYRLEYYKDHFA 202
Query: 617 Y 619
Y
Sbjct: 203 Y 203
Score = 35.5 bits (78), Expect = 1.4
Identities = 22/86 (25%), Positives = 37/86 (43%)
Frame = +1
Query: 28 AFTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLIPLLNQLGIGVTSYG 207
A L D +++ + + E A + + + P+ V + L + GI + +
Sbjct: 3 AVQKLFDQISDPNTKAGYSNACFEAAQRRPKKAMAIAPFSVTTPEALTLERFGITTSPFA 62
Query: 208 TSPHPHAAHKAIETHLCLNIGIILPE 285
T+ H HAA K IE IG LP+
Sbjct: 63 TTSHTHAADKIIENDCLTIIGHYLPK 88
>UniRef50_Q0Z8V5 Cluster: ORF 1; n=1; Chenopodium mosaic virus
X|Rep: ORF 1 - Chenopodium mosaic virus X
Length = 1571
Score = 45.6 bits (103), Expect = 0.001
Identities = 40/154 (25%), Positives = 69/154 (44%), Gaps = 5/154 (3%)
Frame = +3
Query: 273 HLARVPSTVMYMKPEKFQKLQQLNPNFASLINFRHTPKDITRYP---VSNP-HPVETEVA 440
HL + T++++K K + L++ IN PKD+ RY + N V+T +A
Sbjct: 85 HLPKEKVTMLFLKKSKLRYLRRAAALNDVFINKDMEPKDLFRYDRDTIRNSLQNVDTSLA 144
Query: 441 FMHDALMFITPSQILGLFKDSPS*PHSIVLS*SLPKPLMECLHSSLISTATQSKMISWCT 620
+M D L F+ + + LF DSP +++ + LP + S + + +
Sbjct: 145 YMSDTLHFMNFNSVAQLFVDSPK-LTTLLATVVLPVEALHRRSSLYPALYSINYHPQGFE 203
Query: 621 LLEGN-ATGNYTQPLRSLDWLRAQVFHQATFIYL 719
+ GN G Y P +LDWL+ + F +L
Sbjct: 204 YIPGNHGGGAYFHPYDTLDWLKVRKILAKDFYHL 237
Score = 36.3 bits (80), Expect = 0.81
Identities = 18/49 (36%), Positives = 23/49 (46%)
Frame = +1
Query: 139 PYQVNSKLIPLLNQLGIGVTSYGTSPHPHAAHKAIETHLCLNIGIILPE 285
PY + L GI + Y T H HAA KAIE + +G LP+
Sbjct: 40 PYALTDAEADCLENFGITINPYATQTHTHAACKAIENRMLEIVGKHLPK 88
>UniRef50_O37153 Cluster: RNA replicase; n=18; Cymbidium mosaic
virus|Rep: RNA replicase - Cymbidium mosaic virus
Length = 1417
Score = 45.2 bits (102), Expect = 0.002
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Frame = +3
Query: 273 HLARVPSTVMYMKPEKFQKLQQLNPNFASLINFRHTPKDITRYPVSNPHPV---ETEVAF 443
HL + PST +++K K + L++ N N PKD+ RY + + T A+
Sbjct: 85 HLPKEPSTFIFLKRSKLRYLRRAANNKDIFQNQHIEPKDLLRYDDESCEVMPECSTSTAY 144
Query: 444 MHDALMFITPSQILGLFKDSP 506
+ DAL F++ +Q+ +F+DSP
Sbjct: 145 ISDALHFLSYAQLGKIFQDSP 165
>UniRef50_P20951 Cluster: RNA replication protein (176 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=3;
Potexvirus|Rep: RNA replication protein (176 kDa
protein) (ORF 1 protein) [Includes: RNA-directed RNA
polymerase (EC 2.7.7.48); Helicase (EC 3.6.1.-)] -
Papaya mosaic potexvirus (PMV)
Length = 1547
Score = 44.8 bits (101), Expect = 0.002
Identities = 33/101 (32%), Positives = 47/101 (46%), Gaps = 6/101 (5%)
Frame = +3
Query: 288 PSTVMYMKPEKFQKLQQLNPNFASLINFRHTPKDITRYPV-----SNPHP-VETEVAFMH 449
P+T M+MK K Q ++ +N PKD+ RY V N P + T AFM
Sbjct: 91 PTTFMFMKRSKLQYFRRGPQQKDVFLNAHIEPKDVARYDVDTLFDKNVTPQITTNTAFMG 150
Query: 450 DALMFITPSQILGLFKDSPS*PHSIVLS*SLPKPLMECLHS 572
D L F+ + I +FK SP ++ + LP + LHS
Sbjct: 151 DTLHFLPLTAIERIFKSSPK-LQTLYATMVLPPEALHRLHS 190
>UniRef50_Q2V0S0 Cluster: Replicase protein; n=2; Nerine virus
X|Rep: Replicase protein - Nerine virus X
Length = 1504
Score = 44.4 bits (100), Expect = 0.003
Identities = 36/144 (25%), Positives = 68/144 (47%), Gaps = 6/144 (4%)
Frame = +3
Query: 270 NHLARVPSTVMYMKPEKFQKLQQLNPNFASLI-NFRHTPKDITRYP----VSNPHPVETE 434
++L + P T M++K K + L++ +P + + N+ P+D+ RYP + V T+
Sbjct: 84 HNLPKRPVTYMFLKKSKLRYLRR-DPRISDVFQNYEIEPRDVARYPPETVLKRFTVVNTD 142
Query: 435 VAFMHDALMFITPSQILGLFKDSPS*PHSIVLS*SLPKPLMECLHSSLISTATQSKMISW 614
VA++ D L F+ P+ + LF+ S + ++ + LP + L S + +
Sbjct: 143 VAYISDTLHFLRPTFLTALFERSHN-LQTLYATMVLPPEALHKLPSLEPNLYQINYSFDG 201
Query: 615 CTLLEG-NATGNYTQPLRSLDWLR 683
+ G + G Y + L WLR
Sbjct: 202 FQYIPGRHGGGAYHHEFKDLQWLR 225
Score = 33.5 bits (73), Expect = 5.7
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +2
Query: 461 VHYPFPNFRP--FQGLPFMTSLYCSLIVPAEAAYGVPSLFPDLYSYTIKDDQLVYTSRR 631
+H+ P F F+ + +LY ++++P EA + +PSL P+LY D Y R
Sbjct: 150 LHFLRPTFLTALFERSHNLQTLYATMVLPPEALHKLPSLEPNLYQINYSFDGFQYIPGR 208
>UniRef50_Q66339 Cluster: Non-structural/coat protein fusion
product; n=5; Clover yellow mosaic virus|Rep:
Non-structural/coat protein fusion product - Clover
yellow mosaic virus (CYMV)
Length = 312
Score = 42.7 bits (96), Expect = 0.009
Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Frame = +3
Query: 288 PSTVMYMKPEKFQKLQQLNPNFASLINFRHTPKDITRYPVSNPH----PVETEVAFMHDA 455
P T M+MK K Q ++ + IN PKD+ RY H +ET+ F+ D
Sbjct: 91 PVTFMFMKRAKLQYFRRGPQQNDTFINQIVEPKDVARYDEDTLHSTIPTIETKTVFIGDT 150
Query: 456 LMFITPSQILGLFKDSP 506
L F+ PS + LF +P
Sbjct: 151 LHFLPPSFLTKLFARNP 167
Score = 35.1 bits (77), Expect = 1.9
Identities = 16/39 (41%), Positives = 18/39 (46%)
Frame = +1
Query: 139 PYQVNSKLIPLLNQLGIGVTSYGTSPHPHAAHKAIETHL 255
PY + LL LGI + PH H A KAIE L
Sbjct: 40 PYAHSESTADLLEDLGIATNPFAAEPHTHGAAKAIENDL 78
Score = 34.7 bits (76), Expect = 2.5
Identities = 15/45 (33%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
Frame = +2
Query: 461 VHYPFPNF--RPFQGLPFMTSLYCSLIVPAEAAYGVPSLFPDLYS 589
+H+ P+F + F P + ++ ++++P EA YG+ SL+P++YS
Sbjct: 151 LHFLPPSFLTKLFARNPKIQTVLATMVLPTEALYGLTSLYPNVYS 195
>UniRef50_O91259 Cluster: Overlapping protein; n=1; Physalis mottle
virus|Rep: Overlapping protein - Physalis mottle virus
(PhMV) (Belladonna mottle virus-Iowa)
Length = 666
Score = 42.7 bits (96), Expect = 0.009
Identities = 26/80 (32%), Positives = 40/80 (50%)
Frame = +2
Query: 263 TLESSCQSSFYGNVYET*EIPKTSAIKPKLCFPH*LQAHPKGHHSVPR*QPSSCRN*SSV 442
+L C S + +V+ET +IP+ S + +L L ++ H +PR + + +
Sbjct: 83 SLAPPCSSPIHCDVHETFQIPEASGHQSQLLSSPQLPSNLGRHLPIPRDVNALANHDKLL 142
Query: 443 HARRSHVHYPFPNFRPFQGL 502
HARRSHV P N RP L
Sbjct: 143 HARRSHVLPPLSNSRPLHEL 162
>UniRef50_A5JPL2 Cluster: Putative movement protein; n=1; Okra
mosaic virus|Rep: Putative movement protein - Okra
mosaic virus
Length = 671
Score = 41.9 bits (94), Expect = 0.016
Identities = 23/69 (33%), Positives = 36/69 (52%)
Frame = +2
Query: 299 NVYET*EIPKTSAIKPKLCFPH*LQAHPKGHHSVPR*QPSSCRN*SSVHARRSHVHYPFP 478
+++ET E+ + S ++P+L P L HP+G HS S ++ HARR HV P
Sbjct: 95 SLHETPEVSQASKVEPQLPTPPQLPHHPEGLHSFSFFLHDSPKHPRRFHARRPHVLSSLP 154
Query: 479 NFRPFQGLP 505
+ P +P
Sbjct: 155 DSAPLSPVP 163
>UniRef50_Q65005 Cluster: ORF1=155k; n=10; Bamboo mosaic virus|Rep:
ORF1=155k - Bamboo mosaic virus
Length = 1365
Score = 41.5 bits (93), Expect = 0.021
Identities = 34/133 (25%), Positives = 58/133 (43%), Gaps = 5/133 (3%)
Frame = +3
Query: 300 MYMKPEKFQKLQQLNPNFASLINFRHTPKDITRYPVSNPHP----VETEVAFMHDALMFI 467
++MKP K Q ++ + + IN KD+ RYP+ +P + T++AF+ D+L +
Sbjct: 94 LFMKPSKMQYFRRRG-DVDTFINADIVAKDLARYPLETIYPRLPEITTKMAFIGDSLHYF 152
Query: 468 TPSQILGLFKDSPS*PHSIVLS*SLPKPLMECLHSSLISTATQSKMISWCTLLEGNAT-G 644
P + +F SP +++ + LP L S T M G + G
Sbjct: 153 QPEVLEHIFTSSPQ-LETLLATIVLPPEATLRLKSLYPEIYTLHYMPQKFLYKPGGLSGG 211
Query: 645 NYTQPLRSLDWLR 683
Y + L WL+
Sbjct: 212 EYEHDYKDLTWLK 224
>UniRef50_P79950 Cluster: Tyrosine kinase receptor; n=3;
Xenopus|Rep: Tyrosine kinase receptor - Xenopus laevis
(African clawed frog)
Length = 1369
Score = 41.1 bits (92), Expect = 0.028
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Frame = +3
Query: 294 TVMYMKPEKFQKLQQLNPNFASLINF----RHTPKDITRYPVSNPHPVETEVAFMHDALM 461
T MY++P++ + L + L+ P+ ++ + +S+ HPV EV + D+L
Sbjct: 431 TSMYVRPQEDLTIGFLGTSVGRLLQVVLQRNSKPRTLSNFSISDTHPVSREVTRIRDSLF 490
Query: 462 FITPSQILGLFKDSPS*PHSIVLS*SLPKP-LMEC 563
FIT +Q+ + P H + S L P M C
Sbjct: 491 FITGNQVTKVNITGPGCRHFLTCSRCLRAPRFMGC 525
>UniRef50_Q6YI57 Cluster: Polyprotein; n=1; Sclerotinia sclerotiorum
debilitation-associated RNA virus|Rep: Polyprotein -
Sclerotinia sclerotiorum debilitation-associated RNA
virus
Length = 1700
Score = 41.1 bits (92), Expect = 0.028
Identities = 36/133 (27%), Positives = 65/133 (48%), Gaps = 4/133 (3%)
Frame = +3
Query: 294 TVMYMKPEKFQKLQQLNPNFASLINFRHTPKDITRYP-VSNPHP-VETEVAFMHDALMFI 467
T+++ K K + + N +N KD+ RY S P V T AF+ DAL +
Sbjct: 333 TMLWQKRNKAHLMGRSNCKDV-YVNTIMEAKDLVRYDQFSFGLPSVATSTAFIGDALHHM 391
Query: 468 TPSQILGLFKDSPS*P--HSIVLS*SLPKPLMECLHSSLISTATQSKMISWCTLLEGNAT 641
TP + LF+ SP+ H+ ++ P+ L++C S+ + + + + EG+A
Sbjct: 392 TPESVFDLFERSPNLMVLHATIV--IPPETLLKCRSSNPELYSLRYYDDKFVYIPEGHAG 449
Query: 642 GNYTQPLRSLDWL 680
G+Y +++ +WL
Sbjct: 450 GSYVHEVKNSNWL 462
Score = 39.9 bits (89), Expect = 0.065
Identities = 28/72 (38%), Positives = 33/72 (45%)
Frame = +1
Query: 64 IHRDAITAPLVETAISNFRHKLQLYPYQVNSKLIPLLNQLGIGVTSYGTSPHPHAAHKAI 243
I RDA+T E AI + PY +SK L GIG Y H HAA KAI
Sbjct: 260 IERDAVTEIKKEIAIVR-----KYNPYHHSSKQQSALESYGIGSDPYAVRSHTHAAEKAI 314
Query: 244 ETHLCLNIGIIL 279
E L +G+ L
Sbjct: 315 ENKLLDIVGMNL 326
>UniRef50_Q993S7 Cluster: RNA-dependant RNA polymerase; n=74; Banana
mild mosaic virus|Rep: RNA-dependant RNA polymerase -
Banana mild mosaic virus
Length = 1771
Score = 40.3 bits (90), Expect = 0.049
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Frame = +1
Query: 52 LANTIHRDAITAPLVE--TAISNFRHK-LQLYPYQVNSKLIPLLNQLGIGVTSYGTSPHP 222
L N+++ D T L E TA+ N+ + L + PY ++ K LL++ GI ++S H
Sbjct: 12 LLNSLNSDEQTKVLKEAVTALKNYESQNLSVSPYCMSDKARLLLDESGIPLSSTPFVSHS 71
Query: 223 HAAHKAIETHLCLNI 267
H K +E HL N+
Sbjct: 72 HPVCKTLENHLLFNV 86
>UniRef50_Q918W3 Cluster: Putative RNA-dependent RNA polymerase
RdRp; n=1; Indian citrus ringspot virus|Rep: Putative
RNA-dependent RNA polymerase RdRp - Indian citrus
ringspot virus
Length = 1658
Score = 39.9 bits (89), Expect = 0.065
Identities = 18/45 (40%), Positives = 25/45 (55%)
Frame = +2
Query: 485 RPFQGLPFMTSLYCSLIVPAEAAYGVPSLFPDLYSYTIKDDQLVY 619
R F P + +LY ++++P EAAY PS +PDLY D Y
Sbjct: 160 RLFINSPNLDTLYATIVLPVEAAYRQPSRYPDLYQINYDFDGFQY 204
Score = 38.7 bits (86), Expect = 0.15
Identities = 24/86 (27%), Positives = 35/86 (40%)
Frame = +1
Query: 28 AFTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLIPLLNQLGIGVTSYG 207
A + DT T ++ + T + N H + Y + L LGIG +
Sbjct: 7 AIDRITDTTVRTTLQEEACRQ-IRTELKNVEH---VNRYAIPPDAADALEHLGIGTNPFS 62
Query: 208 TSPHPHAAHKAIETHLCLNIGIILPE 285
H H A KAIE L +G +LP+
Sbjct: 63 VKLHTHGACKAIENQLLYVVGTLLPK 88
Score = 33.1 bits (72), Expect = 7.5
Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Frame = +3
Query: 294 TVMYMKPEKFQKLQQLNPNFASLINFRHT-PKDITRY----PVSNPHPVETEVAFMHDAL 458
T++++K K +++ P F + +H P+D++RY S + T A++ D L
Sbjct: 92 TMLFLKKAKLNFMKRC-PKFQDIFLNQHIEPRDVSRYCDFNVQSTSTSIPTHTAYISDTL 150
Query: 459 MFITPSQILGLFKDSPS 509
F+ ++ LF +SP+
Sbjct: 151 HFMDRKDLVRLFINSPN 167
>UniRef50_P09395 Cluster: RNA replication protein (165 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=17; Potato
virus X|Rep: RNA replication protein (165 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)] - Potato virus X
(PVX)
Length = 1456
Score = 38.3 bits (85), Expect = 0.20
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Frame = +2
Query: 461 VHYPFPNF--RPFQGLPFMTSLYCSLIVPAEAAYGVPSLFPDLYSYTIKDDQLVY 619
+H+ P++ FQ P + +LY +L++P EAA+ + S P++YS D Y
Sbjct: 150 LHFLDPSYIVETFQNCPKLQTLYATLVLPVEAAFKMESTHPNIYSLKYFGDGFQY 204
Score = 34.3 bits (75), Expect = 3.3
Identities = 21/56 (37%), Positives = 25/56 (44%)
Frame = +1
Query: 118 RHKLQLYPYQVNSKLIPLLNQLGIGVTSYGTSPHPHAAHKAIETHLCLNIGIILPE 285
+HKL PY + L GI Y H HAA K IE L +G ILP+
Sbjct: 34 KHKLA-NPYAQTVEAANDLEGFGIATNPYSIELHTHAAAKTIENKLLEVLGSILPQ 88
>UniRef50_Q5GR28 Cluster: Replicase; n=1; Hosta virus X|Rep:
Replicase - Hosta virus X
Length = 1507
Score = 37.9 bits (84), Expect = 0.26
Identities = 14/45 (31%), Positives = 28/45 (62%)
Frame = +2
Query: 485 RPFQGLPFMTSLYCSLIVPAEAAYGVPSLFPDLYSYTIKDDQLVY 619
R F P + +LY ++++P EA Y + S++P++Y ++D +Y
Sbjct: 160 RLFLKNPNLNTLYATMVLPPEAMYRMASIYPEIYQIQYQEDGFLY 204
Score = 32.7 bits (71), Expect = 9.9
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +1
Query: 127 LQLY-PYQVNSKLIPLLNQLGIGVTSYGTSPHPHAAHKAIETHL 255
+Q Y PY LL LGI + + H HAA K+IE L
Sbjct: 35 IQTYNPYAQTKDAADLLEDLGINTNPHAVTAHTHAAAKSIENDL 78
>UniRef50_Q1DSG8 Cluster: Putative uncharacterized protein; n=1;
Coccidioides immitis|Rep: Putative uncharacterized
protein - Coccidioides immitis
Length = 674
Score = 36.7 bits (81), Expect = 0.61
Identities = 25/106 (23%), Positives = 46/106 (43%), Gaps = 5/106 (4%)
Frame = +3
Query: 60 HHPPRRHNGSPSGNRHQQFPSQASTLPISGKFQANPIAQSTRHRSHLLWHFTSS-----S 224
+HP R +NG S + SQ S+ P + +++ A H H H S+
Sbjct: 3 YHPQRSYNGGDSNENYNNHGSQQSSFPSNYQYELPSSAPFQPHGFHPAAHPDSAYSRLRD 62
Query: 225 CRS*GHRNSPLFEHWNHLARVPSTVMYMKPEKFQKLQQLNPNFASL 362
R GH +SP + ++H R T+ ++ + + ++P +L
Sbjct: 63 QRHQGHEHSPASQPFSHAQRPHPTLQPVRSQTTRTDSTVSPGADNL 108
>UniRef50_Q4Q2P2 Cluster: Protein kinase, putative; n=3;
Leishmania|Rep: Protein kinase, putative - Leishmania
major
Length = 940
Score = 36.3 bits (80), Expect = 0.81
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +3
Query: 42 SRYSRQHHPPRRHNGSP-SGNRHQQFPSQASTLPISGKFQANPIAQSTR 185
SR+S +HH R+H +P SG+ H Q P Q + P + IA + R
Sbjct: 98 SRHSYRHHQGRQHGSTPRSGSGHSQSPEQPALRPQQATLGVSHIAPAAR 146
>UniRef50_A6SKK9 Cluster: Putative uncharacterized protein; n=2;
Sclerotiniaceae|Rep: Putative uncharacterized protein -
Botryotinia fuckeliana B05.10
Length = 902
Score = 36.3 bits (80), Expect = 0.81
Identities = 21/67 (31%), Positives = 31/67 (46%)
Frame = +3
Query: 54 RQHHPPRRHNGSPSGNRHQQFPSQASTLPISGKFQANPIAQSTRHRSHLLWHFTSSSCRS 233
+Q PP + + +GNR +P + PISG + A P + +R H + S S S
Sbjct: 151 QQAFPPYQPHPMQNGNR--AYPPPGANRPISGVYAAQPPPNAIPNRDHGSYRVRSESSHS 208
Query: 234 *GHRNSP 254
GH P
Sbjct: 209 SGHGGIP 215
>UniRef50_Q3BD97 Cluster: Putative movement protein; n=1; Plantago
mottle virus|Rep: Putative movement protein - Plantago
mottle virus
Length = 627
Score = 35.9 bits (79), Expect = 1.1
Identities = 23/71 (32%), Positives = 36/71 (50%)
Frame = +2
Query: 251 TSV*TLESSCQSSFYGNVYET*EIPKTSAIKPKLCFPH*LQAHPKGHHSVPR*QPSSCRN 430
+S+ LESSC S + +V+ET ++ +T + +L H +H S+ R S
Sbjct: 79 SSLSPLESSCVDSIFSHVHETIKVSQTCETQSELRRAHQFSSHRCRQRSLSRNLHISALP 138
Query: 431 *SSVHARRSHV 463
VHARR+ V
Sbjct: 139 ADCVHARRADV 149
>UniRef50_Q5FSM3 Cluster: NADPH-dependent L-sorbose reductase; n=1;
Gluconobacter oxydans|Rep: NADPH-dependent L-sorbose
reductase - Gluconobacter oxydans (Gluconobacter
suboxydans)
Length = 491
Score = 35.9 bits (79), Expect = 1.1
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Frame = +1
Query: 22 SMAFTNLVDT-LANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLIPLLNQLGIGVT 198
S ++L D+ L ++ RDA+T +V ++ NF H+ Y + + L Q G G+
Sbjct: 5 SQTLSHLPDSILTSSYDRDAVTPGIVHLSVGNF-HRAHQAVY--TDRALALAGQSGWGIV 61
Query: 199 SYGTSPHPHAAHKAIETH 252
G HP KA H
Sbjct: 62 GMGLMDHPAEVAKAEALH 79
>UniRef50_P20129 Cluster: 70 kDa protein; n=1; Eggplant mosaic
virus|Rep: 70 kDa protein - Eggplant mosaic virus
Length = 649
Score = 35.5 bits (78), Expect = 1.4
Identities = 22/67 (32%), Positives = 34/67 (50%)
Frame = +2
Query: 263 TLESSCQSSFYGNVYET*EIPKTSAIKPKLCFPH*LQAHPKGHHSVPR*QPSSCRN*SSV 442
+L S +F +V+ET ++ KT KPK+ L H + HHS+P + + +
Sbjct: 83 SLACSRSPAFNCDVHETVQVSKTCGSKPKIPRVDQLSTHCRRHHSLPLHLTHFSKQFNLL 142
Query: 443 HARRSHV 463
HAR S V
Sbjct: 143 HARCSDV 149
>UniRef50_Q32WC8 Cluster: Overlapping protein p62; n=1; Dulcamara
mottle virus|Rep: Overlapping protein p62 - Dulcamara
mottle virus
Length = 576
Score = 35.1 bits (77), Expect = 1.9
Identities = 26/76 (34%), Positives = 33/76 (43%)
Frame = +2
Query: 263 TLESSCQSSFYGNVYET*EIPKTSAIKPKLCFPH*LQAHPKGHHSVPR*QPSSCRN*SSV 442
TLE S + ++ET E+ K KP+ L AH H V S N +
Sbjct: 83 TLELPLCHSLHSPLHETLEVSKAPTEKPQFPGVKKLPAHVIRHRPVSHHLHHSSHNRVRL 142
Query: 443 HARRSHVHYPFPNFRP 490
HARRS+V N RP
Sbjct: 143 HARRSNVLPSQSNMRP 158
>UniRef50_P28897 Cluster: RNA replication protein (150 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=4;
Potexvirus|Rep: RNA replication protein (150 kDa
protein) (ORF 1 protein) [Includes: RNA-directed RNA
polymerase (EC 2.7.7.48); Helicase (EC 3.6.1.-)] -
Strawberry mild yellow edge-associated virus (SMYEaV)
Length = 1323
Score = 35.1 bits (77), Expect = 1.9
Identities = 19/59 (32%), Positives = 29/59 (49%)
Frame = +1
Query: 109 SNFRHKLQLYPYQVNSKLIPLLNQLGIGVTSYGTSPHPHAAHKAIETHLCLNIGIILPE 285
SN R + PY V+++ L +L I + H HAA K+IE + +G LP+
Sbjct: 31 SNLREAEIINPYSVDARGAEALEELAIITNPHSIRLHTHAAAKSIENQMLNIVGHALPK 89
>UniRef50_P22168 Cluster: RNA replication protein (152 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=5;
Potexvirus|Rep: RNA replication protein (152 kDa
protein) (ORF 1 protein) [Includes: RNA-directed RNA
polymerase (EC 2.7.7.48); Helicase (EC 3.6.1.-)] -
Foxtail mosaic virus
Length = 1335
Score = 35.1 bits (77), Expect = 1.9
Identities = 33/137 (24%), Positives = 56/137 (40%), Gaps = 6/137 (4%)
Frame = +3
Query: 288 PSTVMYMKPEKFQKLQQLNPNFASLINFRHTPKDITRYPVSNPH----PVETEVAFMHDA 455
P T M+ KP K + ++ + +N P+D+ RYP + + T AF+ D
Sbjct: 92 PVTFMFTKPGKLRFFRRRG-HVDKFVNADIVPRDLARYPRDTVYSYLPEITTTHAFIGDT 150
Query: 456 LMFITPSQILGLFKDSPS*PHSIVLS*SLPKPL--MECLHSSLISTATQSKMISWCTLLE 629
L ++ +F SP + P+ ME LH S+ + + + L
Sbjct: 151 LHHFGEDFLVEVFSRSPKLEVLLATMVLPPEAFYRMESLHPSVYTLLYRDDRFLY--LPG 208
Query: 630 GNATGNYTQPLRSLDWL 680
G + G Y + L+WL
Sbjct: 209 GLSGGEYEHRYKDLNWL 225
>UniRef50_Q59PR6 Cluster: Putative uncharacterized protein; n=1;
Candida albicans|Rep: Putative uncharacterized protein -
Candida albicans (Yeast)
Length = 145
Score = 33.9 bits (74), Expect = 4.3
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Frame = +2
Query: 506 FMTSLYCSLIV-PAEAAYGVPSLFPDLYSYTIKDDQLVYTSRRKCYRQLHSTSPFFGLAP 682
F S++C L+ +E+A PSLF L S + DD S+ + L S P F L
Sbjct: 10 FSFSIFCFLVGGSSESATAFPSLFSSLSSSSSSDDN----SKSETSSSLSSALPIFALPF 65
Query: 683 RSGISSGDLHLSVTLLESFVSV 748
S LS +L E +S+
Sbjct: 66 SGSCSCSSSSLSSSLSEILISL 87
>UniRef50_Q5K4J4 Cluster: RNA-directed RNA polymerase; n=154; Pepino
mosaic virus|Rep: RNA-directed RNA polymerase - Pepino
mosaic virus
Length = 1439
Score = 33.5 bits (73), Expect = 5.7
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +1
Query: 139 PYQVNSKLIPLLNQLGIGVTSYGTSPHPHAAHKAIETHLCLNIGIILPE 285
PY +N L LG+ + + H HAA K +E + +G LP+
Sbjct: 40 PYALNDYEADTLENLGVTINPHAIQTHTHAAAKVVENRMLEIVGHHLPK 88
>UniRef50_Q22WD6 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 335
Score = 33.5 bits (73), Expect = 5.7
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +3
Query: 261 EHWNHLARVPSTVMYMKPEKFQ-KLQQLNPNFASLINFRHTPKDITR 398
+++NHL P+ + + FQ + ++LNPNF L+ F+ K +T+
Sbjct: 230 QYFNHLLSHPNCINFQTQMLFQFEDKELNPNFKPLVEFQDKVKSLTQ 276
>UniRef50_A5A9V2 Cluster: Huntingtin like protein; n=2; Ciona
intestinalis|Rep: Huntingtin like protein - Ciona
intestinalis (Transparent sea squirt)
Length = 2948
Score = 33.5 bits (73), Expect = 5.7
Identities = 20/58 (34%), Positives = 32/58 (55%)
Frame = +1
Query: 124 KLQLYPYQVNSKLIPLLNQLGIGVTSYGTSPHPHAAHKAIETHLCLNIGIILPEFLLR 297
K + Y QV L+PLL+QL + VTS+ H+ +AI IG+++ + LL+
Sbjct: 1411 KWKKYSRQVADVLLPLLSQLKVNVTSHDDVSTLHSLFEAISPSALRPIGLLM-DLLLK 1467
>UniRef50_Q5BE57 Cluster: Putative uncharacterized protein; n=1;
Emericella nidulans|Rep: Putative uncharacterized
protein - Emericella nidulans (Aspergillus nidulans)
Length = 353
Score = 33.5 bits (73), Expect = 5.7
Identities = 20/55 (36%), Positives = 24/55 (43%)
Frame = +3
Query: 42 SRYSRQHHPPRRHNGSPSGNRHQQFPSQASTLPISGKFQANPIAQSTRHRSHLLW 206
SR SRQ H HN SPS + H + Q +P+ A PI H LW
Sbjct: 37 SRQSRQRH--LTHNPSPSSSHHDRQRQQQQAVPLQQHINA-PIRPHIWHSKKRLW 88
>UniRef50_A6R238 Cluster: Predicted protein; n=1; Ajellomyces
capsulatus NAm1|Rep: Predicted protein - Ajellomyces
capsulatus NAm1
Length = 695
Score = 33.5 bits (73), Expect = 5.7
Identities = 26/64 (40%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Frame = +3
Query: 54 RQHHP--PRRHNGSPSGNRHQQFPSQA--STLPISGKFQANPIAQSTRHRSHLLWHFTSS 221
RQHHP R H S S ++ + QA S+ +SG A PI+ RHR + H SS
Sbjct: 586 RQHHPLVARAHARSQSQSQRSRARQQAQWSSTSVSGSSVAGPISPLLRHR---IRH-PSS 641
Query: 222 SCRS 233
SC S
Sbjct: 642 SCTS 645
>UniRef50_P15402 Cluster: RNA replication protein (147 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=5;
Potexvirus|Rep: RNA replication protein (147 kDa
protein) (ORF 1 protein) [Includes: RNA-directed RNA
polymerase (EC 2.7.7.48); Helicase (EC 3.6.1.-)] - White
clover mosaic virus (strain O) (WCMV)
Length = 1294
Score = 33.5 bits (73), Expect = 5.7
Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
Frame = +1
Query: 76 AITAPLVETAISNFR----HKLQLYPYQVNSKLIPLLNQLGIGVTSYGTSPHPHAAHKAI 243
++ A L E A S+ R L PY + L + GI + H H A K+I
Sbjct: 15 SVKAVLNEEAYSHIRPVLRESLTNNPYAIAPDAADTLEKYGIATNPFAVKVHSHGAVKSI 74
Query: 244 ETHLCLNIGIILPE 285
E L +G LP+
Sbjct: 75 ENTLLERVGFNLPK 88
>UniRef50_Q6YNQ7 Cluster: 158kDa replicase; n=1; Botrytis virus
X|Rep: 158kDa replicase - Botrytis virus X
Length = 1413
Score = 33.1 bits (72), Expect = 7.5
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +1
Query: 136 YPYQVNSKLIPLLNQLGIGVTSYGTSPHPHAAHKAIETHLCLNIG 270
+PY+V+ LL + G+ + T+ H HAA K +E +G
Sbjct: 39 FPYKVDESTAILLEKEGVLTNPFSTTLHTHAAEKMLENRTLNEVG 83
>UniRef50_Q9VRT5 Cluster: CG6602-PA; n=3; Sophophora|Rep: CG6602-PA
- Drosophila melanogaster (Fruit fly)
Length = 436
Score = 33.1 bits (72), Expect = 7.5
Identities = 13/41 (31%), Positives = 26/41 (63%)
Frame = +2
Query: 566 SLFPDLYSYTIKDDQLVYTSRRKCYRQLHSTSPFFGLAPRS 688
SL ++Y++ KD+QL+YT+R+ C R + + + P++
Sbjct: 264 SLQSEIYAHLPKDEQLLYTARKVCIRNVTEENSYIYECPQT 304
>UniRef50_Q6IJR9 Cluster: HDC14379; n=1; Drosophila
melanogaster|Rep: HDC14379 - Drosophila melanogaster
(Fruit fly)
Length = 135
Score = 33.1 bits (72), Expect = 7.5
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = +3
Query: 516 HSIVLS*SLPKPLMECLHSSLISTATQSKMISWCTLLEGNATGNYTQPLRS 668
HS+ L LP+PL S+L + ISW EGN + +PL +
Sbjct: 21 HSVALQLPLPRPLAPLHFSTLAEVRLRLTFISWANRQEGNFSYQKHKPLNA 71
>UniRef50_Q5CHK1 Cluster: Asparagine-rich protein; n=2;
Cryptosporidium|Rep: Asparagine-rich protein -
Cryptosporidium hominis
Length = 1243
Score = 33.1 bits (72), Expect = 7.5
Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Frame = +3
Query: 33 HQFSRYSRQHHPPRRHNGSPSGNRHQQFPSQASTLPISGKF-QANPIAQSTRHRSH 197
HQ ++ +QHH + H G Q P Q S I F Q + S+ H SH
Sbjct: 252 HQ-QQHQQQHHQQQHHQQQHQGQNTTQHPKQVSQRQIPSNFQQKHQTYSSSSHNSH 306
>UniRef50_UPI00006A1CCB Cluster: DENN/MADD domain containing 4B.;
n=3; Xenopus tropicalis|Rep: DENN/MADD domain containing
4B. - Xenopus tropicalis
Length = 1257
Score = 32.7 bits (71), Expect = 9.9
Identities = 30/115 (26%), Positives = 48/115 (41%), Gaps = 2/115 (1%)
Frame = +3
Query: 390 ITRYPVSNPH--PVETEVAFMHDALMFITPSQILGLFKDSPS*PHSIVLS*SLPKPLMEC 563
I RYP+S PH P+E ++ + F +P + L + SP + S P PL
Sbjct: 78 IYRYPISGPHVLPIEKHISNFMFNVPFPSPQRPRILVQMSPYDNVLLCQPVSSPLPLRYA 137
Query: 564 LHSSLISTATQSKMISWCTLLEGNATGNYTQPLRSLDWLRAQVFHQATFIYLSLY 728
L+ I +I+W T + ATG + + F A IY+ ++
Sbjct: 138 LNKP-IGLLECLSLITWYTHMFIYATGRGLHLNSKIAIFSPKCFSYALHIYMEIF 191
>UniRef50_Q8CDV4 Cluster: Adult male testis cDNA, RIKEN full-length
enriched library, clone:4921513B05 product:hypothetical
RING finger containing protein, full insert sequence;
n=2; Murinae|Rep: Adult male testis cDNA, RIKEN
full-length enriched library, clone:4921513B05
product:hypothetical RING finger containing protein,
full insert sequence - Mus musculus (Mouse)
Length = 233
Score = 32.7 bits (71), Expect = 9.9
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +3
Query: 24 HGFHQFSRYSRQH-HPPRRHNGSPSGN-RHQQFP 119
H +H+F RY +H HPP H G P R Q +P
Sbjct: 137 HQYHRFGRYRHRHRHPPIFHRGPPHPPVRRQLYP 170
>UniRef50_A6PS51 Cluster: Putative uncharacterized protein
precursor; n=1; Victivallis vadensis ATCC BAA-548|Rep:
Putative uncharacterized protein precursor - Victivallis
vadensis ATCC BAA-548
Length = 581
Score = 32.7 bits (71), Expect = 9.9
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -3
Query: 106 WRFPLGEPLWRLGGWC 59
W F LG P+W++ GWC
Sbjct: 30 WLFALGVPVWKMAGWC 45
>UniRef50_Q9VCM2 Cluster: CG4374-PA; n=1; Drosophila
melanogaster|Rep: CG4374-PA - Drosophila melanogaster
(Fruit fly)
Length = 858
Score = 32.7 bits (71), Expect = 9.9
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Frame = +3
Query: 33 HQFSRYSRQHH--PPRRHNGSPSGNRHQQFPSQASTLPISGKFQANPIAQSTRHRSHLLW 206
HQ + Q+H PP HNG + N + Q PI+ + Q + TR S+ +
Sbjct: 58 HQQQQQHHQNHQQPPHSHNGHNNNNNNNNNHVQVVHQPITSQSQQQSLCGGTRTNSNNMI 117
Query: 207 H 209
H
Sbjct: 118 H 118
>UniRef50_Q1DWD6 Cluster: Putative uncharacterized protein; n=1;
Coccidioides immitis|Rep: Putative uncharacterized
protein - Coccidioides immitis
Length = 810
Score = 32.7 bits (71), Expect = 9.9
Identities = 28/88 (31%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
Frame = +3
Query: 57 QHHPPRRHNGSPSGNRHQQFPSQASTLPISGKFQA--NPIAQSTRHRSHLLWHFTSSSCR 230
+HHPP R S G+ P +ST + +P +QS H L TSSS
Sbjct: 723 KHHPPARQLSSSPGSPFFSSPDSSSTDEKRSSLLSPRSPRSQSPTHSRSDLGSNTSSS-- 780
Query: 231 S*GHRNSPLFEHWNHLARVPSTVMYMKP 314
+SP+F H H A +PS ++ P
Sbjct: 781 ----SSSPIFTHSFHQA-IPSGLLSDSP 803
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 809,302,815
Number of Sequences: 1657284
Number of extensions: 18332598
Number of successful extensions: 46295
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 44057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46187
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 61734884250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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