Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021287
(750 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 28 1.6
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos... 27 2.9
SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 2.9
SPBC32F12.01c ||SPBC685.10c|inositol phosphosphingolipid phospho... 26 5.0
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 5.0
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom... 26 6.6
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz... 26 6.6
SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomy... 26 6.6
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 25 8.7
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 27.9 bits (59), Expect = 1.6
Identities = 22/74 (29%), Positives = 30/74 (40%)
Frame = +3
Query: 36 QFSRYSRQHHPPRRHNGSPSGNRHQQFPSQASTLPISGKFQANPIAQSTRHRSHLLWHFT 215
Q S S ++ + SG+RH + S +LP K Q + R + HF
Sbjct: 16 QLSNTSSTESSSSNNSSTASGSRHVKIESNRVSLP-PLKIQKGSF-PAIRQPTESSTHFQ 73
Query: 216 SSSCRS*GHRNSPL 257
SS S H SPL
Sbjct: 74 SSHSVSNAHNQSPL 87
>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 532
Score = 27.1 bits (57), Expect = 2.9
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +2
Query: 503 PFMTSLYCSLIVPAEAAYGVPSLFPDLYSYTIKDDQLVYTSRRKCYRQL 649
P + +LY VP + + DL+S +K ++L + RK +RQ+
Sbjct: 81 PNIITLYQVFRVPKYTVLALEYMDTDLHSMVVKHNRLDECTTRKIFRQI 129
>SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 391
Score = 27.1 bits (57), Expect = 2.9
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +3
Query: 78 HNGSPSGNRHQQFPSQASTLPISGKFQANPIAQSTR 185
+NG PSG R + ST IS F P A +R
Sbjct: 10 NNGLPSGEREESETPGGSTSIISSSFLLQPRASDSR 45
>SPBC32F12.01c ||SPBC685.10c|inositol phosphosphingolipid
phospholipase C |Schizosaccharomyces pombe|chr
2|||Manual
Length = 424
Score = 26.2 bits (55), Expect = 5.0
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +3
Query: 387 DITRYPVSNPHPVETEVAFMHDALMFITPSQI 482
D P+S PH + T ++DA + + P Q+
Sbjct: 179 DFNIQPLSVPHEIITSYGLVNDAWLSVYPDQV 210
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.2 bits (55), Expect = 5.0
Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 1/98 (1%)
Frame = +3
Query: 120 SQASTLPISGKFQANPIAQSTRHRSHLLWHFTSSSCRS*GHRNSPLFEHWNHLARVPSTV 299
+ +STL S + P A S+ H S L H +SSS +S S F H + +R S
Sbjct: 378 TSSSTLTSSSSSSSRP-ASSSSHSSSLSSHKSSSSSKSSSAPVSSAFYHNSTSSRSSSHS 436
Query: 300 MYMKPEKFQKLQQLNPNFASLI-NFRHTPKDITRYPVS 410
L + +SL+ + HT + T Y V+
Sbjct: 437 SSHSLSSLSSKPILTASSSSLLTSSSHTYERSTVYVVT 474
>SPBC30B4.04c |sol1||SWI/SNF complex subunit
Sol1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 865
Score = 25.8 bits (54), Expect = 6.6
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Frame = +3
Query: 249 SPLFEHWNHLARVPSTVMYMKPEKFQK-LQQLNPNFASLINFRHTPKDITRYPV-SNPHP 422
S L +++N +P ++ ++ QK LQQ N ++ N + PK+ + PV + P
Sbjct: 260 SLLIQYYNSYL-LPYEEAWLAAQQQQKSLQQAKANHSA--NVQSRPKNYPQKPVQTTPEA 316
Query: 423 VETEVAFMHDALMFITPSQILGLFKDSPS*PHSI 524
V + MH +L +PS + SP+ P ++
Sbjct: 317 VHANGS-MHGSLHSKSPSPAFTANRFSPAAPTTV 349
>SPBC354.05c |sre2||membrane-tethered transcription factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 793
Score = 25.8 bits (54), Expect = 6.6
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +3
Query: 468 TPSQILGLFKDSPS*PHSIVLS*SLPKPLMECLHSSLISTAT 593
TPSQ F D+P HS+ + S P+P M+ S + S T
Sbjct: 559 TPSQ-QAYFPDAPHNCHSVPQNSSYPRPPMQVNRSPIDSMQT 599
>SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 321
Score = 25.8 bits (54), Expect = 6.6
Identities = 9/28 (32%), Positives = 19/28 (67%)
Frame = +1
Query: 121 HKLQLYPYQVNSKLIPLLNQLGIGVTSY 204
H+++L+P+ ++ + +LGI VT+Y
Sbjct: 188 HQMELHPFLPQTEFVEKHKKLGIHVTAY 215
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 25.4 bits (53), Expect = 8.7
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +2
Query: 572 FPDLYSYTIKDDQLVYTSRRKCYRQL 649
FP L SYT+KDD + + + + ++L
Sbjct: 907 FPTLQSYTLKDDPWMDSGKIRVLKEL 932
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,341,781
Number of Sequences: 5004
Number of extensions: 77445
Number of successful extensions: 192
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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