Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021287
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0037 + 12709014-12709104,12709407-12709612,12710033-127100... 32 0.56
01_01_0012 + 71903-72935,73468-73981,74619-76008 31 0.98
10_08_0021 + 14217455-14217505,14217742-14217909,14219137-142193... 30 1.7
02_05_1335 - 35770403-35770543,35770630-35770755,35770859-357709... 30 2.3
06_01_0415 + 2958746-2959110,2960468-2960593,2961314-2961998 29 3.0
04_03_0830 - 20125827-20125913,20126262-20126357,20126974-201270... 26 3.6
06_01_0691 - 5040280-5040801,5041439-5041529,5042368-5042568,504... 29 3.9
03_06_0523 + 34499533-34499705,34499808-34499917,34500037-345002... 29 3.9
04_03_0447 + 16015043-16015489,16017358-16017530,16017906-160180... 28 6.9
10_08_0749 - 20282982-20283632,20284081-20284141,20284828-202848... 28 9.1
10_03_0031 + 7214010-7215450,7215534-7216913,7217007-7217386 28 9.1
01_01_0803 + 6252721-6252736,6252807-6253252,6253372-6253613,625... 28 9.1
>07_03_0037 +
12709014-12709104,12709407-12709612,12710033-12710097,
12710143-12710404,12711332-12711448,12711779-12712056,
12712304-12712406
Length = 373
Score = 31.9 bits (69), Expect = 0.56
Identities = 16/60 (26%), Positives = 34/60 (56%), Gaps = 7/60 (11%)
Frame = +3
Query: 336 QLNPNFASLINFRHTPKDITRYPVSNPHPV-------ETEVAFMHDALMFITPSQILGLF 494
+++P+ SL+++ PK R+PVS+P+ + E++ A++H L I +++ F
Sbjct: 309 EIDPSVPSLLDYYPLPKRGERFPVSDPNMMPRLQPRPESDTAYLHGILESIARIEVISFF 368
>01_01_0012 + 71903-72935,73468-73981,74619-76008
Length = 978
Score = 31.1 bits (67), Expect = 0.98
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Frame = +3
Query: 42 SRYSRQHHPPRRH-----NGSPSGNRHQQFPSQASTLPISGKFQANPIAQSTRHRSHLLW 206
SR SR + PP RH + SPS + H ++ S S K+ + +S R R
Sbjct: 538 SRRSRSYSPPVRHTRGRRSRSPSRSYHSKYGSDRSYRDDRDKYGRSGRRESDRSRD---- 593
Query: 207 HFTSSSCRS*GHRNSP 254
H++SSS R+ SP
Sbjct: 594 HYSSSSRRNRSRSISP 609
>10_08_0021 +
14217455-14217505,14217742-14217909,14219137-14219340,
14219429-14219601,14219970-14220066,14220183-14220336,
14222029-14222209,14222858-14222898,14223146-14223231,
14223282-14223389,14223538-14223579
Length = 434
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/58 (31%), Positives = 30/58 (51%)
Frame = +1
Query: 31 FTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLIPLLNQLGIGVTSY 204
F L + A+TI R P+ TA+ + + L+ + ++IPL +LGIG+ Y
Sbjct: 156 FVGLSEASADTIRRAHAVYPI--TAV---QMEWSLWTRDIEEEIIPLCRELGIGIVPY 208
>02_05_1335 -
35770403-35770543,35770630-35770755,35770859-35770942,
35771444-35771656,35771759-35771977
Length = 260
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +3
Query: 54 RQHHPPRRHNGSPSGNRHQQFPSQ-ASTLPISGKFQANPIAQSTRH 188
RQH R+H+ S S +H++ S T P+ N S+RH
Sbjct: 198 RQHRSERKHSSSASTTKHKRKSSSLKDTSPVGRTIDFNGADSSSRH 243
>06_01_0415 + 2958746-2959110,2960468-2960593,2961314-2961998
Length = 391
Score = 29.5 bits (63), Expect = 3.0
Identities = 17/47 (36%), Positives = 20/47 (42%)
Frame = +3
Query: 336 QLNPNFASLINFRHTPKDITRYPVSNPHPVETEVAFMHDALMFITPS 476
Q +P+ L+NFRH K T P P T HD F PS
Sbjct: 223 QADPSVELLVNFRHGLKVETNGLAPPPPPPPTTTTNFHDDQHFCFPS 269
>04_03_0830 -
20125827-20125913,20126262-20126357,20126974-20127053,
20127124-20127220,20127457-20127544,20128491-20128576,
20129358-20130530
Length = 568
Score = 25.8 bits (54), Expect(2) = 3.6
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +3
Query: 117 PSQASTLPISGKFQANPIAQSTRHRSHLLWHFTSSSCRS*GHRNS 251
P T P++ + A S R +S + ++SSS S GH+ S
Sbjct: 127 PRPEETTPVTAPAPSAVTADSPRKKSFWSFLYSSSSSSSGGHQGS 171
Score = 21.8 bits (44), Expect(2) = 3.6
Identities = 11/34 (32%), Positives = 15/34 (44%)
Frame = +3
Query: 42 SRYSRQHHPPRRHNGSPSGNRHQQFPSQASTLPI 143
S S HPP S + H S +S+LP+
Sbjct: 66 SSKSSPFHPPPASASSSTPTSHVAAESSSSSLPL 99
>06_01_0691 - 5040280-5040801,5041439-5041529,5042368-5042568,
5042649-5046148
Length = 1437
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 166 PLLNQLGIGVTSYGTSPHPHAAHKAIETHLCLNIGI 273
P + + I +TSYGTS HP A K + + N+ I
Sbjct: 1059 PTIATMHILMTSYGTSGHPDEAEKVLNSLKSSNLEI 1094
>03_06_0523 +
34499533-34499705,34499808-34499917,34500037-34500224,
34500984-34501451
Length = 312
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +3
Query: 48 YSRQHHPPRRHNGSPSGNRHQQFPSQA 128
+ R H PP H PS Q+FP +A
Sbjct: 176 HDRHHEPPMSHKKFPSSAGEQRFPDRA 202
>04_03_0447 +
16015043-16015489,16017358-16017530,16017906-16018008,
16018177-16018521
Length = 355
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/58 (25%), Positives = 27/58 (46%)
Frame = +1
Query: 31 FTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLIPLLNQLGIGVTSY 204
+ L + A+TI R + P+ I + L+ V ++P +LGIG+ +Y
Sbjct: 164 YIGLSEASASTIRRAHVVHPITAVQI-----EWSLWSRDVEEDIVPTCRELGIGIVAY 216
>10_08_0749 -
20282982-20283632,20284081-20284141,20284828-20284872,
20285293-20285672,20286382-20287050
Length = 601
Score = 27.9 bits (59), Expect = 9.1
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Frame = -2
Query: 557 HKRLRQGL*ENNRVRS*RGVLEKA*NLGRGNEHESVVHERYFSFY--RMRVANGVPSDV 387
HK + G+ E++ R RG+ E+A ++ R E +H R F+ + ++++ PSDV
Sbjct: 312 HKAYQAGMLESHPWRPQRGLPERAVSILRAWLFEHFLHPRMFAGFVTMLKLSPRYPSDV 370
>10_03_0031 + 7214010-7215450,7215534-7216913,7217007-7217386
Length = 1066
Score = 27.9 bits (59), Expect = 9.1
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Frame = +3
Query: 387 DITRYPVSNPHPVETEVAF----MHDALMFITPSQILGLFKDSPS*PHSIVLS*SLPKPL 554
D+ +S P PVE ++ ++ + ++T GLF ++PS H I+ + SL P+
Sbjct: 155 DLEFNSLSGPIPVELRLSHNLRSINIQMNYLTGLIPNGLFNNTPSLKHLIIGNNSLSGPI 214
Query: 555 MECLHS 572
C+ S
Sbjct: 215 PSCIGS 220
>01_01_0803 +
6252721-6252736,6252807-6253252,6253372-6253613,
6253753-6253849,6253984-6254167,6254241-6254322,
6254602-6254647,6255473-6255490
Length = 376
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +1
Query: 442 SCTTLSCSLPLPKF*AFSRTPLHDLTLLFSHSPCRS 549
S +T + LP P A+ R P DL H PC S
Sbjct: 51 SASTAASPLPWPGLHAWRRAPPSDLRTWGPHGPCAS 86
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,085,941
Number of Sequences: 37544
Number of extensions: 520863
Number of successful extensions: 1196
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1194
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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