Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021287
(750 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g71460.1 68414.m08257 pentatricopeptide (PPR) repeat-containi... 31 1.1
At3g12420.1 68416.m01547 hypothetical protein 30 1.4
At5g65330.1 68418.m08218 MADS-box family protein contains Pfam p... 30 1.9
At5g39450.1 68418.m04778 F-box family protein contains Pfam:PF00... 30 1.9
At3g10070.1 68416.m01207 transcription initiation factor IID (TF... 30 1.9
At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative simila... 28 5.8
At1g60690.1 68414.m06832 aldo/keto reductase family protein cont... 28 5.8
At3g24600.1 68416.m03090 hypothetical protein 28 7.6
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str... 28 7.6
At1g60710.1 68414.m06834 aldo/keto reductase family protein cont... 28 7.6
At1g10810.1 68414.m01241 aldo/keto reductase family protein cont... 28 7.6
>At1g71460.1 68414.m08257 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 689
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 594 QSKMISWCTLLEGNAT-GNYTQPLRSLDWLRAQVF 695
Q ISW L+ G A G + Q LRS+ W++ + F
Sbjct: 380 QRNAISWTALMSGYAANGRFDQALRSIVWMQQEGF 414
>At3g12420.1 68416.m01547 hypothetical protein
Length = 308
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
Frame = +3
Query: 45 RYSRQHHPPRRHNGSPSGNRH---QQFPSQASTLPISGKFQANPIAQSTRHRSHLLWHFT 215
RY HHPPR ++ +P NR+ P P ++ AN + + + ++
Sbjct: 79 RYYSDHHPPRSYDPNPPPNRYYSDHHPPRSYDRNPPPNRYDANDLPPNRYYDHQTEGYYE 138
Query: 216 SSSCRS*GHRNSPL 257
S+ R H PL
Sbjct: 139 HSAPRD--HNADPL 150
Score = 29.5 bits (63), Expect = 2.5
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +3
Query: 42 SRYSRQHHPPRRHNGSPSGNRH 107
+RY HHPPR ++ +P NR+
Sbjct: 97 NRYYSDHHPPRSYDRNPPPNRY 118
>At5g65330.1 68418.m08218 MADS-box family protein contains Pfam
profile PF00319: SRF-type transcription factor
(DNA-binding and dimerisation domain); MADS-box protein
AGL78
Length = 341
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 306 MKPEKFQKLQQLNPNFASLINFRHTPKDITRYPVSNPH 419
+ P + Q LNP+ SL + H +++ P+S PH
Sbjct: 147 LTPSYLNQTQHLNPSKFSLFMYNHGDATLSQLPLSAPH 184
>At5g39450.1 68418.m04778 F-box family protein contains Pfam:PF00646
F-box domain ; similar to SKP1 interacting partner 2
(SKIP2) TIGR_Ath1:At5g67250
Length = 579
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/55 (32%), Positives = 24/55 (43%)
Frame = +2
Query: 488 PFQGLPFMTSLYCSLIVPAEAAYGVPSLFPDLYSYTIKDDQLVYTSRRKCYRQLH 652
PF+ LPF IV + VP L + T KDD+ V RR ++H
Sbjct: 218 PFRKLPFSYRRNLLHIVTSTVGIPVPDLSSEKLFPTSKDDEAVLLERRTMLLKMH 272
>At3g10070.1 68416.m01207 transcription initiation factor IID
(TFIID) subunit A family protein similar to hypothetical
protein GB:CAB10099 [Schizosaccharomyces pombe];
contains Pfam profile PF03847: Transcription initiation
factor TFIID subunit A
Length = 539
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +3
Query: 90 PSG-NRHQQFPSQASTLPISGKFQANPIAQSTRHRS 194
PSG +HQQ P+Q+S P S +P+AQ+ + S
Sbjct: 216 PSGMTQHQQRPTQSSLRPASSTSTQSPVAQNFQGHS 251
>At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative similar
to CAF protein [Arabidopsis thaliana] GI:6102610;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF03368:
Domain of unknown function, PF00636: RNase3 domain,
PF00035: Double-stranded RNA binding motif
Length = 1676
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/47 (27%), Positives = 26/47 (55%)
Frame = -3
Query: 616 HQLIIFDCVAVEIREE*RHSISGFGRDYERTIE*GHEGESLKRPKIW 476
H I +C+++ I +E H+ Y ++ ++ ESL+RP+I+
Sbjct: 237 HCFIKMECISLLIFDECHHAQQQSNHPYAEIMKVFYKSESLQRPRIF 283
>At1g60690.1 68414.m06832 aldo/keto reductase family protein
contains Pfam profile PF00248: oxidoreductase, aldo/keto
reductase family
Length = 345
Score = 28.3 bits (60), Expect = 5.8
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = +1
Query: 31 FTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLIPLLNQLGIGVTSY 204
+ L + A+TI R P+ TA+ + + L+ V +++P +LGIG+ SY
Sbjct: 156 YIGLSEASASTIRRAHTVHPI--TAV---QLEWSLWTRDVEEEIVPTCRELGIGIVSY 208
>At3g24600.1 68416.m03090 hypothetical protein
Length = 506
Score = 27.9 bits (59), Expect = 7.6
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = +1
Query: 64 IHRDAITAPLVETAISNFRHKLQLYPYQVNSKLIPLLNQLGIGVTSYGTSPHPHAAHK 237
IH + T L +A++ +L+ Y SK I ++ G V YG PH A+ K
Sbjct: 391 IHVSSSTFKLTFSALTLATGQLKSYYQPRKSKHISIVKLTGAEVPLYGAGPHLAASDK 448
>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
similarity to 60S ribosomal protein L1 GB:P49691
Length = 406
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +1
Query: 43 VDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLIPLL 174
+ ++ N I +DA A L + + N L+L PY +K + LL
Sbjct: 304 IQSVVNPIKKDAKRAVLKKNPLKNLNVMLKLNPYAKTAKRMSLL 347
>At1g60710.1 68414.m06834 aldo/keto reductase family protein
contains Pfam profile PF00248: oxidoreductase, aldo/keto
reductase family
Length = 345
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/58 (27%), Positives = 27/58 (46%)
Frame = +1
Query: 31 FTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLIPLLNQLGIGVTSY 204
+ L + A+TI R P+ I + L+ V ++IP +LGIG+ +Y
Sbjct: 156 YIGLSEASASTIRRAHAVHPITAVQI-----EWSLWTRDVEEEIIPTCRELGIGIVAY 208
>At1g10810.1 68414.m01241 aldo/keto reductase family protein
contains Pfam profile PF00248: oxidoreductase, aldo/keto
reductase family
Length = 344
Score = 27.9 bits (59), Expect = 7.6
Identities = 18/58 (31%), Positives = 29/58 (50%)
Frame = +1
Query: 31 FTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLIPLLNQLGIGVTSY 204
+ L + A+TI R PL TA+ + + L+ V +IP +LGIG+ +Y
Sbjct: 156 YIGLSEACASTIRRAHAVHPL--TAV---QLEWSLWSRDVEEDIIPTCRELGIGIVAY 208
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,659,612
Number of Sequences: 28952
Number of extensions: 415292
Number of successful extensions: 1060
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1059
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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