Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021286
(739 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14F5.05c |sam1||S-adenosylmethionine synthetase |Schizosacch... 135 7e-33
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo... 28 1.6
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p... 26 4.9
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ... 26 6.4
SPBC119.03 |||S-adenosylmethionine-dependent methyltransferase |... 26 6.4
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 8.5
SPBC3B9.03 |||signal recognition particle receptor alpha subunit... 25 8.5
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 25 8.5
>SPBC14F5.05c |sam1||S-adenosylmethionine synthetase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 382
Score = 135 bits (326), Expect = 7e-33
Identities = 57/85 (67%), Positives = 75/85 (88%)
Frame = +2
Query: 254 TGMVLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGV 433
TGMV++ GEIT+++ +DYQKV+R T+K IGYDDS KGFDYKTC+V++A++QQSP+IA G+
Sbjct: 49 TGMVMVFGEITTRSQIDYQKVIRNTIKSIGYDDSEKGFDYKTCNVLVAIEQQSPDIAQGL 108
Query: 434 HENRNDEEVGAGDQGLMFGYATDET 508
H + EE+GAGDQG+MFGYATDET
Sbjct: 109 HYEKALEELGAGDQGIMFGYATDET 133
Score = 89.8 bits (213), Expect = 3e-19
Identities = 41/75 (54%), Positives = 54/75 (72%)
Frame = +1
Query: 511 ECMPLTVVLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEYVFAGGATVPQRVHTVVVSL 690
E +PLT++LAHKLN ++ RR+G W RPD+KTQVT EY GA +P+RV T+VVS
Sbjct: 135 EKLPLTILLAHKLNAAMSVARRDGSLPWLRPDTKTQVTIEYEEENGAVIPRRVDTIVVSA 194
Query: 691 QHSEKITLETLRDEI 735
QH++ I+ E LR EI
Sbjct: 195 QHADSISTEDLRSEI 209
Score = 79.4 bits (187), Expect = 5e-16
Identities = 36/44 (81%), Positives = 39/44 (88%)
Frame = +3
Query: 123 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITK 254
FLFTSESVGEGHPDK+CDQISDAILDA L DP +KVACET +K
Sbjct: 5 FLFTSESVGEGHPDKICDQISDAILDACLKDDPFSKVACETASK 48
>SPAC110.02 |pds5||cohesin-associated protein
Pds5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1205
Score = 27.9 bits (59), Expect = 1.6
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = -2
Query: 675 SMNSLWDCCTTSKYIFASNLCF*IWSCPPK--FSISPELCNFL 553
S +SL D TT ++IF+ NL +W P +I P+ N L
Sbjct: 244 SRDSLSDSMTTPEFIFSHNLVLQLWKYAPTTLLNIIPQFENEL 286
>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 749
Score = 26.2 bits (55), Expect = 4.9
Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Frame = +3
Query: 27 WANSKFRMPETSKMNGYAKTNGH-SYDMEDGSVFLFTSESVGEGHPDKMCDQISDAIL 197
W + K M S T S+D E S+F S+SV E CD+ SD L
Sbjct: 633 WPDEKKAMESHSTRAHRRSTESKISFDSEADSLFEEASKSVPEDPVSVFCDEESDESL 690
>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 391
Score = 25.8 bits (54), Expect = 6.4
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = -1
Query: 394 EHHTACLVIKAFGRIIITNMFDRFAHNFLIIHVSFGCDFATQ 269
EH+ C+ + G ++++ DR + I +S C F T+
Sbjct: 101 EHNIPCITFNSSGTLLLSGSIDRSLQIWDITSLSCLCKFYTK 142
>SPBC119.03 |||S-adenosylmethionine-dependent methyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 266
Score = 25.8 bits (54), Expect = 6.4
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +2
Query: 290 KANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQ 409
+ N DY K+ E VK G D+ K C ++ L Q+
Sbjct: 106 EVNEDYAKIAYELVKLAGLDEIVTIMIGKACDSLVELQQK 145
>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 565
Score = 25.4 bits (53), Expect = 8.5
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -3
Query: 179 LVAHFVWMTLANRFRCEQKY*SIFHII 99
L+ HFVW + CE+K+ S H++
Sbjct: 394 LLLHFVWKSALICVLCERKFQSWGHVV 420
>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
Srp101|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 25.4 bits (53), Expect = 8.5
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = -3
Query: 425 QQCLVIVGLVRASHCMSCNQSLWTNHHNQYV*PFRAQLFD 306
Q +V V + + CM+ +QSL + HN ++ F+ +L D
Sbjct: 61 QYSIVFVVVFQDLKCMAYSQSLLNSAHNIFLNLFKEKLED 100
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 25.4 bits (53), Expect = 8.5
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +3
Query: 159 PDKMCDQISDAILDA-HLNQDPDAKVACETITK 254
P K ++ D ++ + H N DPDAK+A ++K
Sbjct: 180 PPKEIEKTVDHVIQSEHCNIDPDAKMAVLRLSK 212
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,304,989
Number of Sequences: 5004
Number of extensions: 73116
Number of successful extensions: 232
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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