Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021286
(739 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0264 + 2030080-2031270 108 5e-24
01_02_0051 - 10655867-10657057 106 2e-23
01_03_0090 - 12347165-12348349 103 1e-22
12_02_0952 - 24731799-24731901,24732169-24732231,24732941-247339... 29 2.9
06_03_1318 - 29282562-29282566,29282727-29282810,29282913-292833... 29 3.9
03_06_0340 + 33252677-33252864,33253086-33254442,33254565-332546... 29 3.9
02_01_0375 + 2712289-2712957 29 3.9
12_02_0655 + 21588662-21589051 28 8.9
>05_01_0264 + 2030080-2031270
Length = 396
Score = 108 bits (259), Expect = 5e-24
Identities = 50/87 (57%), Positives = 67/87 (77%), Gaps = 2/87 (2%)
Frame = +2
Query: 254 TGMVLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGV 433
T MV++ GEIT+KANVDY+K+VRET ++IG+ + G D C V++ ++QQSP+IA GV
Sbjct: 51 TNMVMVFGEITTKANVDYEKIVRETCRNIGFVSADVGLDADHCKVLVNIEQQSPDIAQGV 110
Query: 434 HEN--RNDEEVGAGDQGLMFGYATDET 508
H + + EE+GAGDQG MFGYATDET
Sbjct: 111 HGHFTKRPEEIGAGDQGHMFGYATDET 137
Score = 82.2 bits (194), Expect = 4e-16
Identities = 38/76 (50%), Positives = 51/76 (67%)
Frame = +1
Query: 511 ECMPLTVVLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEYVFAGGATVPQRVHTVVVSL 690
E MPL+ VLA KL ++ E+R+NG W RPD KTQVT EY GA VP RVHTV++S
Sbjct: 139 ELMPLSHVLATKLGARLTEVRKNGTCAWLRPDGKTQVTVEYRNESGARVPVRVHTVLIST 198
Query: 691 QHSEKITLETLRDEIR 738
QH E +T + + +++
Sbjct: 199 QHDETVTNDEIAADLK 214
Score = 81.8 bits (193), Expect = 5e-16
Identities = 35/44 (79%), Positives = 40/44 (90%)
Frame = +3
Query: 123 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITK 254
FLFTSESV EGHPDK+CDQ+SDA+LDA L +DPD+KVACET TK
Sbjct: 7 FLFTSESVNEGHPDKLCDQVSDAVLDACLAEDPDSKVACETCTK 50
>01_02_0051 - 10655867-10657057
Length = 396
Score = 106 bits (255), Expect = 2e-23
Identities = 49/87 (56%), Positives = 67/87 (77%), Gaps = 2/87 (2%)
Frame = +2
Query: 254 TGMVLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGV 433
T MV++ GEIT+KANVDY+K+VR+T + IG+ + G D + C V++ ++QQSP+IA GV
Sbjct: 51 TNMVMVFGEITTKANVDYEKIVRDTCRGIGFVSNDVGLDAEHCKVLVNIEQQSPDIAQGV 110
Query: 434 HEN--RNDEEVGAGDQGLMFGYATDET 508
H + + EE+GAGDQG MFGYATDET
Sbjct: 111 HGHFTKRPEEIGAGDQGHMFGYATDET 137
Score = 82.2 bits (194), Expect = 4e-16
Identities = 38/76 (50%), Positives = 51/76 (67%)
Frame = +1
Query: 511 ECMPLTVVLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEYVFAGGATVPQRVHTVVVSL 690
E MPL+ VLA KL ++ E+R+NG W RPD KTQVT EY GA VP RVHTV++S
Sbjct: 139 ELMPLSHVLATKLGARLTEVRKNGACAWLRPDGKTQVTVEYQNDNGAMVPLRVHTVLIST 198
Query: 691 QHSEKITLETLRDEIR 738
QH E +T + + +++
Sbjct: 199 QHDETVTNDEIAADLK 214
Score = 81.8 bits (193), Expect = 5e-16
Identities = 36/50 (72%), Positives = 42/50 (84%)
Frame = +3
Query: 105 MEDGSVFLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITK 254
M + FLFTSESV EGHPDK+CDQISDA+LDA L +DP++KVACET TK
Sbjct: 1 MAEVDTFLFTSESVNEGHPDKLCDQISDAVLDACLAEDPESKVACETCTK 50
>01_03_0090 - 12347165-12348349
Length = 394
Score = 103 bits (247), Expect = 1e-22
Identities = 48/87 (55%), Positives = 64/87 (73%), Gaps = 2/87 (2%)
Frame = +2
Query: 254 TGMVLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGV 433
T MV++ GEIT+KA VDY+K+VR+T + IG+ G D C V++ ++QQSP+IA GV
Sbjct: 50 TNMVMVFGEITTKATVDYEKIVRDTCRGIGFVSDDVGLDADRCKVLVNIEQQSPDIAQGV 109
Query: 434 HEN--RNDEEVGAGDQGLMFGYATDET 508
H + + EE+GAGDQG MFGYATDET
Sbjct: 110 HGHFTKRPEEIGAGDQGHMFGYATDET 136
Score = 83.4 bits (197), Expect = 2e-16
Identities = 38/76 (50%), Positives = 52/76 (68%)
Frame = +1
Query: 511 ECMPLTVVLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEYVFAGGATVPQRVHTVVVSL 690
E MPL+ VLA KL ++ E+R+NG W RPD KTQVT EY+ GA VP RVHTV++S
Sbjct: 138 ELMPLSHVLATKLGARLTEVRKNGTCAWLRPDGKTQVTVEYLNDAGAMVPVRVHTVLIST 197
Query: 691 QHSEKITLETLRDEIR 738
QH E +T + + +++
Sbjct: 198 QHDETVTNDEIAADLK 213
Score = 83.0 bits (196), Expect = 2e-16
Identities = 36/44 (81%), Positives = 40/44 (90%)
Frame = +3
Query: 123 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITK 254
FLFTSESV EGHPDK+CDQ+SDA+LDA L QDPD+KVACET TK
Sbjct: 6 FLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTK 49
>12_02_0952 -
24731799-24731901,24732169-24732231,24732941-24733980,
24734094-24734339
Length = 483
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = -3
Query: 515 HSLSHLLHNRTSSPGLLPQLPRHFCSHAPQQQCLVI 408
H+ + LLH R LLP++ RHF H QQQ +++
Sbjct: 92 HAAAPLLHRRI----LLPEVDRHFKPHRCQQQRVMV 123
>06_03_1318 - 29282562-29282566,29282727-29282810,29282913-29283380,
29283735-29283917,29284362-29284467,29284627-29284651,
29284736-29284855,29284920-29284997,29285646-29285774,
29285976-29285989,29286168-29287944,29288344-29288489,
29288921-29291029
Length = 1747
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -3
Query: 539 ASTTVNGMHSLSHLLHNRTSSPGLLPQLPRHFCSHAPQ 426
+S+ +NG +L +SS G L QLPR+F S P+
Sbjct: 1675 SSSELNGQPLDDSILDIESSSFGFLSQLPRNFFSDLPE 1712
>03_06_0340 +
33252677-33252864,33253086-33254442,33254565-33254667,
33256081-33256171,33257208-33257300,33258316-33258471,
33258583-33258655
Length = 686
Score = 29.1 bits (62), Expect = 3.9
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
Frame = -3
Query: 548 SLCASTTVNGMHSLSHLLHNRTSSPGLLPQLPRHFCSHAPQQQCLVIVG------LVRAS 387
+LC S + +H LS L H G+LP + H P+ + I+ L+RAS
Sbjct: 86 ALC-SAILGALHKLSALPHIEEEHVGVLPSMVEAELPHLPEDLLVQILSRLEIPDLLRAS 144
Query: 386 HCMSCNQSLWTNHHN 342
S S +T H+
Sbjct: 145 SVCSSWHSAYTTLHS 159
>02_01_0375 + 2712289-2712957
Length = 222
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 529 VVLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEYV 636
VV +L++ + +++G WW RPDS EY+
Sbjct: 164 VVYWGRLSKALVWWKQSGNNWWPRPDSDLGEDFEYI 199
>12_02_0655 + 21588662-21589051
Length = 129
Score = 27.9 bits (59), Expect = 8.9
Identities = 19/53 (35%), Positives = 23/53 (43%)
Frame = +2
Query: 71 WIRENQRTQL*YGRWISIFVHIGICWRGSSRQNVRPNKRRYSRRASESGSGRK 229
WI QR ++ G W RGS V P +RR SRR SG R+
Sbjct: 27 WIGGRQRPRMWIGDWREE--------RGSVAVGVAPGRRRESRRRPGSGEARR 71
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,737,362
Number of Sequences: 37544
Number of extensions: 490323
Number of successful extensions: 1318
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1315
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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