Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021286
         (739 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   3.0  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   3.0  
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    23   4.0  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   4.0  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   4.0  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    23   4.0  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   6.9  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   9.1  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    21   9.1  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   9.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   9.1  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = +2

Query: 575 EMENFGGQDQIQKHRLLANMYLL 643
           ++ ++ G++ +  H+LL N Y L
Sbjct: 250 DLPDYRGEEYLYSHKLLLNRYYL 272


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = +2

Query: 575 EMENFGGQDQIQKHRLLANMYLL 643
           ++ ++ G++ +  H+LL N Y L
Sbjct: 250 DLPDYRGEEYLYSHKLLLNRYYL 272


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +3

Query: 528 CSACTQTQSENCRAQAKW 581
           C  CT+ Q +N    A+W
Sbjct: 75  CKKCTEIQKQNLDKLAEW 92


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 636 ICWWCNSPTESSYCSRVTATL*KDYPRDL 722
           IC+ C   T +S   R+   L  DY RD+
Sbjct: 24  ICFVCKDITSTSALYRLKLYLFCDYDRDI 52


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -2

Query: 123 ILIHLPYHNCVRWFSRIHSFLKSPAF 46
           I+ HL  H  V W+S+  +F   P +
Sbjct: 173 IVFHLETHPNVTWYSQCVTFNAFPTY 198


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +3

Query: 528 CSACTQTQSENCRAQAKW 581
           C  CT+ Q +N    A+W
Sbjct: 75  CKKCTEIQKQNLDKLAEW 92


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -2

Query: 489 PNIKPWSPAPTSSSFLFSCTPAAMFGDCWSSASITLH 379
           PN++P S    +++      P  M  D W+S  + LH
Sbjct: 57  PNVRPISSHQIANNVTMQLLPKLMEFDDWTSV-MELH 92


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = -2

Query: 300 TLALDVISPHKSTIPV*LWFH--MQLLR 223
           TL ++  +P   T+P+  W H  + LLR
Sbjct: 524 TLEVEEWNPLTDTVPIHTWIHPWLPLLR 551


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -1

Query: 616 VFLNLVLPTKILHF 575
           VFL+L++P  IL+F
Sbjct: 14  VFLSLLIPALILYF 27


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 113 WISIFVHIGICWRGSSRQNVRPNKRR 190
           W+ + V +GI  +G +   VR N  R
Sbjct: 4   WLLLVVCLGIACQGITSVTVRENSPR 29


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 10/35 (28%), Positives = 15/35 (42%)
 Frame = -3

Query: 524 NGMHSLSHLLHNRTSSPGLLPQLPRHFCSHAPQQQ 420
           +G+H +  LL     SP  L    +    +  QQQ
Sbjct: 69  SGIHQMQQLLQQHILSPTQLQSFMQQHSLYLQQQQ 103


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,325
Number of Sequences: 438
Number of extensions: 4654
Number of successful extensions: 20
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)