Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021286
         (739 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g17390.1 68416.m02222 S-adenosylmethionine synthetase, putati...   105   2e-23
At4g01850.1 68417.m00242 S-adenosylmethionine synthetase 2 (SAM2...   102   3e-22
At1g02500.2 68414.m00201 S-adenosylmethionine synthetase 1 (SAM1...   102   3e-22
At1g02500.1 68414.m00200 S-adenosylmethionine synthetase 1 (SAM1...   102   3e-22
At2g36880.1 68415.m04521 S-adenosylmethionine synthetase, putati...   100   9e-22

>At3g17390.1 68416.m02222 S-adenosylmethionine synthetase, putative
           similar to S-adenosylmethionine synthetase 2 (Methionine
           adenosyltransferase 2, AdoMet synthetase 2)
           [Catharanthus roseus] SWISS-PROT:Q96552
          Length = 393

 Score =  105 bits (253), Expect = 2e-23
 Identities = 49/87 (56%), Positives = 66/87 (75%), Gaps = 2/87 (2%)
 Frame = +2

Query: 254 TGMVLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGV 433
           T MV++ GEIT+KANVDY+++VR+T + IG+  +  G D   C V++ ++QQSP+IA GV
Sbjct: 48  TNMVMVFGEITTKANVDYEQIVRKTCREIGFVSADVGLDADNCKVLVNIEQQSPDIAQGV 107

Query: 434 HEN--RNDEEVGAGDQGLMFGYATDET 508
           H +  +  EEVGAGDQG MFGYATDET
Sbjct: 108 HGHLTKKPEEVGAGDQGHMFGYATDET 134



 Score = 87.0 bits (206), Expect = 1e-17
 Identities = 40/76 (52%), Positives = 52/76 (68%)
 Frame = +1

Query: 511 ECMPLTVVLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEYVFAGGATVPQRVHTVVVSL 690
           E MPLT VLA KL  K+ E+R+NG   W RPD KTQVT EY+   GA VP RVHTV++S 
Sbjct: 136 ELMPLTHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTIEYINESGAMVPVRVHTVLIST 195

Query: 691 QHSEKITLETLRDEIR 738
           QH E +T + +  +++
Sbjct: 196 QHDETVTNDEIAADLK 211



 Score = 83.8 bits (198), Expect = 1e-16
 Identities = 42/70 (60%), Positives = 50/70 (71%), Gaps = 4/70 (5%)
 Frame = +3

Query: 123 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKP----VWCFCVAKSHP 290
           FLFTSESV EGHPDK+CDQISDAILDA L QDP++KVACET TK     V+     K++ 
Sbjct: 4   FLFTSESVNEGHPDKLCDQISDAILDACLEQDPESKVACETCTKTNMVMVFGEITTKANV 63

Query: 291 KLTWIIKKLC 320
               I++K C
Sbjct: 64  DYEQIVRKTC 73


>At4g01850.1 68417.m00242 S-adenosylmethionine synthetase 2 (SAM2)
           identical to S-adenosylmethionine synthetase 2
           (Methionine adenosyltransferase 2, AdoMet synthetase 2)
           [Arabidopsis thaliana] SWISS-PROT:P17562
          Length = 393

 Score =  102 bits (244), Expect = 3e-22
 Identities = 46/87 (52%), Positives = 64/87 (73%), Gaps = 2/87 (2%)
 Frame = +2

Query: 254 TGMVLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGV 433
           T MV++ GEIT+KA +DY+K+VR+T + IG+     G D   C V++ ++QQSP+IA GV
Sbjct: 48  TNMVMVFGEITTKATIDYEKIVRDTCRSIGFISDDVGLDADKCKVLVNIEQQSPDIAQGV 107

Query: 434 HEN--RNDEEVGAGDQGLMFGYATDET 508
           H +  +  E++GAGDQG MFGYATDET
Sbjct: 108 HGHFTKRPEDIGAGDQGHMFGYATDET 134



 Score = 84.2 bits (199), Expect = 8e-17
 Identities = 37/44 (84%), Positives = 40/44 (90%)
 Frame = +3

Query: 123 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITK 254
           FLFTSESV EGHPDK+CDQISDA+LDA L QDPD+KVACET TK
Sbjct: 4   FLFTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCTK 47



 Score = 81.8 bits (193), Expect = 4e-16
 Identities = 37/76 (48%), Positives = 51/76 (67%)
 Frame = +1

Query: 511 ECMPLTVVLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEYVFAGGATVPQRVHTVVVSL 690
           E MPL+ VLA K+  ++ E+R+NG   W RPD KTQVT EY    GA VP RVHTV++S 
Sbjct: 136 ELMPLSHVLATKIGARLTEVRKNGTCRWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLIST 195

Query: 691 QHSEKITLETLRDEIR 738
           QH E +T + +  +++
Sbjct: 196 QHDETVTNDEIARDLK 211


>At1g02500.2 68414.m00201 S-adenosylmethionine synthetase 1 (SAM1)
           identical to S-adenosylmethionine synthetase 1
           (Methionine adenosyltransferase 1, AdoMet synthetase 1)
           [Arabidopsis thaliana] SWISS-PROT:P23686
          Length = 393

 Score =  102 bits (244), Expect = 3e-22
 Identities = 48/87 (55%), Positives = 64/87 (73%), Gaps = 2/87 (2%)
 Frame = +2

Query: 254 TGMVLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGV 433
           T MV++ GEIT+KA VDY+K+VR+T + IG+     G D   C V++ ++QQSP+IA GV
Sbjct: 48  TNMVMVFGEITTKATVDYEKIVRDTCRAIGFVSDDVGLDADKCKVLVNIEQQSPDIAQGV 107

Query: 434 HEN--RNDEEVGAGDQGLMFGYATDET 508
           H +  +  EE+GAGDQG MFGYATDET
Sbjct: 108 HGHFTKCPEEIGAGDQGHMFGYATDET 134



 Score = 84.2 bits (199), Expect = 8e-17
 Identities = 37/44 (84%), Positives = 40/44 (90%)
 Frame = +3

Query: 123 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITK 254
           FLFTSESV EGHPDK+CDQISDA+LDA L QDPD+KVACET TK
Sbjct: 4   FLFTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCTK 47



 Score = 81.4 bits (192), Expect = 6e-16
 Identities = 38/76 (50%), Positives = 51/76 (67%)
 Frame = +1

Query: 511 ECMPLTVVLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEYVFAGGATVPQRVHTVVVSL 690
           E MPL+ VLA KL  ++ E+R+NG   W RPD KTQVT EY    GA VP RVHTV++S 
Sbjct: 136 ELMPLSHVLATKLGARLTEVRKNGTCAWLRPDGKTQVTVEYYNDKGAMVPIRVHTVLIST 195

Query: 691 QHSEKITLETLRDEIR 738
           QH E +T + +  +++
Sbjct: 196 QHDETVTNDEIARDLK 211


>At1g02500.1 68414.m00200 S-adenosylmethionine synthetase 1 (SAM1)
           identical to S-adenosylmethionine synthetase 1
           (Methionine adenosyltransferase 1, AdoMet synthetase 1)
           [Arabidopsis thaliana] SWISS-PROT:P23686
          Length = 393

 Score =  102 bits (244), Expect = 3e-22
 Identities = 48/87 (55%), Positives = 64/87 (73%), Gaps = 2/87 (2%)
 Frame = +2

Query: 254 TGMVLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGV 433
           T MV++ GEIT+KA VDY+K+VR+T + IG+     G D   C V++ ++QQSP+IA GV
Sbjct: 48  TNMVMVFGEITTKATVDYEKIVRDTCRAIGFVSDDVGLDADKCKVLVNIEQQSPDIAQGV 107

Query: 434 HEN--RNDEEVGAGDQGLMFGYATDET 508
           H +  +  EE+GAGDQG MFGYATDET
Sbjct: 108 HGHFTKCPEEIGAGDQGHMFGYATDET 134



 Score = 84.2 bits (199), Expect = 8e-17
 Identities = 37/44 (84%), Positives = 40/44 (90%)
 Frame = +3

Query: 123 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITK 254
           FLFTSESV EGHPDK+CDQISDA+LDA L QDPD+KVACET TK
Sbjct: 4   FLFTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCTK 47



 Score = 81.4 bits (192), Expect = 6e-16
 Identities = 38/76 (50%), Positives = 51/76 (67%)
 Frame = +1

Query: 511 ECMPLTVVLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEYVFAGGATVPQRVHTVVVSL 690
           E MPL+ VLA KL  ++ E+R+NG   W RPD KTQVT EY    GA VP RVHTV++S 
Sbjct: 136 ELMPLSHVLATKLGARLTEVRKNGTCAWLRPDGKTQVTVEYYNDKGAMVPIRVHTVLIST 195

Query: 691 QHSEKITLETLRDEIR 738
           QH E +T + +  +++
Sbjct: 196 QHDETVTNDEIARDLK 211


>At2g36880.1 68415.m04521 S-adenosylmethionine synthetase, putative
           similar to S-adenosylmethionine synthetase 3 (Methionine
           adenosyltransferase 3, AdoMet synthetase 3)
           [Lycopersicon esculentum] SWISS-PROT:P43282
          Length = 390

 Score =  100 bits (240), Expect = 9e-22
 Identities = 46/87 (52%), Positives = 64/87 (73%), Gaps = 2/87 (2%)
 Frame = +2

Query: 254 TGMVLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGV 433
           T MV++ GEIT+ A VDY+K+VR T + IG+  +  G D   C+V++ ++QQSP+IA GV
Sbjct: 48  TNMVMVFGEITTAAKVDYEKIVRSTCREIGFISADVGLDADKCNVLVNIEQQSPDIAQGV 107

Query: 434 HEN--RNDEEVGAGDQGLMFGYATDET 508
           H +  +  E++GAGDQG MFGYATDET
Sbjct: 108 HGHLTKKPEDIGAGDQGHMFGYATDET 134



 Score = 83.0 bits (196), Expect = 2e-16
 Identities = 37/44 (84%), Positives = 40/44 (90%)
 Frame = +3

Query: 123 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITK 254
           FLFTSESV EGHPDK+CDQISDAILDA L QDP++KVACET TK
Sbjct: 4   FLFTSESVNEGHPDKLCDQISDAILDACLEQDPESKVACETCTK 47



 Score = 83.0 bits (196), Expect = 2e-16
 Identities = 39/76 (51%), Positives = 51/76 (67%)
 Frame = +1

Query: 511 ECMPLTVVLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEYVFAGGATVPQRVHTVVVSL 690
           E MPLT VLA KL  K+ E+R+N    W RPD KTQVT EY   GGA +P RVHTV++S 
Sbjct: 136 ELMPLTHVLATKLGAKLTEVRKNKTCPWLRPDGKTQVTVEYKNDGGAMIPIRVHTVLIST 195

Query: 691 QHSEKITLETLRDEIR 738
           QH E +T + +  +++
Sbjct: 196 QHDETVTNDEIAADLK 211


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,553,894
Number of Sequences: 28952
Number of extensions: 399776
Number of successful extensions: 1083
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1040
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1078
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)