Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021285
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58754-4|AAX22292.1|  332|Caenorhabditis elegans Serpentine rece...    29   3.5  
Z77132-6|CAB00861.3| 1406|Caenorhabditis elegans Hypothetical pr...    28   6.2  
AJ276018-1|CAC81666.1| 1122|Caenorhabditis elegans putative TRP ...    28   6.2  

>U58754-4|AAX22292.1|  332|Caenorhabditis elegans Serpentine
           receptor, class sx protein15 protein.
          Length = 332

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/58 (24%), Positives = 30/58 (51%)
 Frame = -1

Query: 339 IFNKFTIVFYSLRNKTILFK*FRRDFVGTFFPKYLNRMSKYVLMTYFKVVFMISVMIN 166
           IF   T++FYS+    + +K   ++    F  +   R  KY+++ +    F+ S+++N
Sbjct: 180 IFTILTVLFYSVAFVVLHYKQVHKNANVQFLERMCMRTLKYLIVLFVVFRFITSIILN 237


>Z77132-6|CAB00861.3| 1406|Caenorhabditis elegans Hypothetical
           protein F54D1.5 protein.
          Length = 1406

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -1

Query: 507 TPRKCAAPFESLSLESDSNFKLIKGPREKKNT 412
           TP +   P ES++  + + ++  KGP E+K T
Sbjct: 812 TPEQLPYPRESITSTTSNRYRYSKGPEEQKET 843


>AJ276018-1|CAC81666.1| 1122|Caenorhabditis elegans putative TRP
           homologous cationchannel protein.
          Length = 1122

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -1

Query: 507 TPRKCAAPFESLSLESDSNFKLIKGPREKKNT 412
           TP +   P ES++  + + ++  KGP E+K T
Sbjct: 528 TPEQLPYPRESITSTTSNRYRYSKGPEEQKET 559


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,855,794
Number of Sequences: 27780
Number of extensions: 312002
Number of successful extensions: 554
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)