Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021284
         (469 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    30   0.20 
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    29   0.47 
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    28   0.62 
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C...    28   0.82 
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c...    27   1.1  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    27   1.4  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    27   1.4  
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc...    27   1.9  
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    26   2.5  
SPAC27E2.02 |||IMPACT homolog|Schizosaccharomyces pombe|chr 1|||...    25   4.4  
SPAC13D6.05 |alp11|SPAC4G9.01|tubulin specific chaperone cofacto...    25   5.8  
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S...    25   7.6  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   7.6  

>SPCC162.08c |nup211||nuclear pore complex associated
            protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 29.9 bits (64), Expect = 0.20
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
 Frame = +1

Query: 277  LKAQLELYKSDFEAERE-----SRQEMASEKETVLTDLRKTQRMNQELTQQLDEVRRLNS 441
            L++QLE  K  +E E+E     +R E+ +EKE    +L        +  ++L+E  + NS
Sbjct: 1573 LRSQLESTKQYYEKEKETEILAARSELVAEKEKTKEELENQLNEKSQRIKELEEQAQKNS 1632



 Score = 28.7 bits (61), Expect = 0.47
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +1

Query: 286  QLELYKSDFEAERESRQEMASEKETVLTDLRK-TQRMNQELTQQLDEVRRLNSDVYQRAT 462
            QLE  K + EA  + +QE+    ET L +  K T    Q++    +EV  L  +V Q  T
Sbjct: 1353 QLEELKKNCEALEKEKQEL----ETKLQETAKETDTFKQQVNSLNEEVENLKKEVEQANT 1408

Query: 463  AN 468
             N
Sbjct: 1409 KN 1410


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 28.7 bits (61), Expect = 0.47
 Identities = 17/62 (27%), Positives = 35/62 (56%)
 Frame = +1

Query: 262 EDTELLKAQLELYKSDFEAERESRQEMASEKETVLTDLRKTQRMNQELTQQLDEVRRLNS 441
           +DT     QL+L +++FE ++ES   ++ E   + T L K +  N+ L ++ ++V  L  
Sbjct: 633 KDTSSKLQQLQLERANFE-QKES--TLSDENNDLRTKLLKLEESNKSLIKKQEDVDSLEK 689

Query: 442 DV 447
           ++
Sbjct: 690 NI 691


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1727

 Score = 28.3 bits (60), Expect = 0.62
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
 Frame = +1

Query: 262 EDTELLKAQLELYKSDFEAERES----RQEMASEKETVLTDLRKTQRMNQELTQQLDEVR 429
           E T  L+   E+Y+++  A +ES     Q++ SE E +  +L  ++   Q  T   D + 
Sbjct: 643 ESTRELEKNYEVYRNEMTAIQESLSKRNQDLLSEMEAIRKELENSKYQQQLST---DRLT 699

Query: 430 RLNSDV 447
             N+DV
Sbjct: 700 NANNDV 705



 Score = 27.5 bits (58), Expect = 1.1
 Identities = 15/65 (23%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = +1

Query: 277  LKAQLELYKSDFEAERESRQEMASEKETVLTDLRKTQRMNQELTQQLDEV-RRLNSDVYQ 453
            L+ ++E  K+D    R +++++ S+ +T    ++K +  N+E  +   E+   LNS    
Sbjct: 1256 LREKIETLKTDLANFRLNKEQLESQLQTEKAAVKKLENSNEEYKRHNQEILLSLNSSTST 1315

Query: 454  RATAN 468
             + A+
Sbjct: 1316 SSDAS 1320


>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
           Cct2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 27.9 bits (59), Expect = 0.82
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = -1

Query: 232 FQHLQLLSAGHKRRGQHLNVGSSGILRFLGLAVEDVTTI 116
           F H +L+  GH ++ + + +G   +++F G+   +  TI
Sbjct: 331 FDHPELVKLGHCKKIEEIIIGEDKMIKFSGVEAGEACTI 369


>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +1

Query: 265 DTELLKAQLELYKSDFEAERESRQEMASEKETVL 366
           D E L+ QL+  + +   ERE RQ++    E ++
Sbjct: 429 DLETLRLQLQALQEELRVEREERQQLIQMSEDLV 462



 Score = 25.4 bits (53), Expect = 4.4
 Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +1

Query: 259 KEDTELLKAQLELYKSDFEAERESRQEMASEKETVLTDLRKTQR-MNQELTQQLDEVRRL 435
           +E+   LKA  +  +   E   + RQ+M+        D+ K+ + + Q+ +QQ  ++  L
Sbjct: 374 EEERRALKADNQTLQKQLEKAIQERQDMSDFLNNFKADMAKSDKLLMQQQSQQTGDLETL 433


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 116  DCSNILDSKAKEAKNPGTPNIEMLT 190
            DCS  L + AKE + PG P I+ +T
Sbjct: 1102 DCSADLHTIAKEIQGPGGPKIDDIT 1126


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 12/54 (22%), Positives = 29/54 (53%)
 Frame = +1

Query: 286 QLELYKSDFEAERESRQEMASEKETVLTDLRKTQRMNQELTQQLDEVRRLNSDV 447
           ++++  +D E E+E++    SE    LTD  +   + ++L +  +E+  L+  +
Sbjct: 360 RIQVLTADLEKEKENQIMHESEASIGLTDSMQVHTLQEQLHKANEEIEFLHDQI 413


>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1233

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
 Frame = +1

Query: 280  KAQLELYKSDFEAERESRQEM---ASEKETVLTDLRKTQRMNQELTQQLDEVRRLNSDV 447
            +A+LEL K DF +E    +++   ASEK+ V       +R+  ELT+    +  L S++
Sbjct: 872  EAELELLKEDFASENSKTEKILLAASEKKLV------GKRLVSELTKLSGNITLLESEI 924


>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1010

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 10/38 (26%), Positives = 23/38 (60%)
 Frame = +2

Query: 131 LDSKAKEAKNPGTPNIEMLTSALVARGQELQMLKVEID 244
           + S +K   +  +P+I++  S+ ++R + L  L +E+D
Sbjct: 568 ISSSSKSINSSPSPSIQLSVSSSISRDKNLSPLDLELD 605


>SPAC27E2.02 |||IMPACT homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 280

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 271 ELLKAQLELYKSDFEAERESRQEMASEKET 360
           +LLK  +++      AERES+ +  S+KET
Sbjct: 88  DLLKELVDIDAEQAAAERESKLQEESDKET 117


>SPAC13D6.05 |alp11|SPAC4G9.01|tubulin specific chaperone cofactor
           B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 234

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +1

Query: 286 QLELYKSDFEAERESRQEMASEKETVLTDLRK 381
           QL  +  DFEA + SRQE    +   L DL+K
Sbjct: 124 QLGRFNPDFEASKASRQESLKRE---LVDLQK 152


>SPCC1827.04 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 600

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +1

Query: 265 DTELLKAQLELYKSDFEAERESRQEMASEKETVLTDLRK 381
           D+  +KAQ E  K   E E+E RQ    E+E     L K
Sbjct: 354 DSISIKAQEEERKRQAEIEKEIRQSRLQEEERKKKKLAK 392


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3699

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 17/64 (26%), Positives = 29/64 (45%)
 Frame = +2

Query: 35  LEKQHSAVLSNIGQVRGTLSIFEGIFKDCSNILDSKAKEAKNPGTPNIEMLTSALVARGQ 214
           L K HS++    G V+  LSI    +K  + ++         P TP+   +++A  A   
Sbjct: 163 LFKDHSSLAK--GHVQEFLSIVVENYKSMTTVVSEAFPPRSAPNTPSSHPMSAASSASPA 220

Query: 215 ELQM 226
           E+ M
Sbjct: 221 EIGM 224


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,486,741
Number of Sequences: 5004
Number of extensions: 26428
Number of successful extensions: 131
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)