Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021283
(749 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces pom... 116 4e-27
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 29 0.71
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 28 1.2
SPBC32F12.03c |gpx1||glutathione peroxidase Gpx1|Schizosaccharom... 27 2.2
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c... 27 2.2
SPAC1D4.03c |aut12||autophagy associated protein Aut12|Schizosac... 27 2.9
SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces... 27 3.8
SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|ch... 27 3.8
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 27 3.8
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||... 26 5.0
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 26 6.6
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch... 26 6.6
SPCC4B3.09c |||mitochondrial ribosomal protein subunit L12|Schiz... 26 6.6
SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomy... 25 8.7
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 25 8.7
>SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 585
Score = 116 bits (279), Expect = 4e-27
Identities = 53/80 (66%), Positives = 62/80 (77%)
Frame = +1
Query: 508 QQYSPGQAQLTLRYGMNPHQKPAQVFTTRDSLPITTLNGAPGFINLCDALNAWQLVKELK 687
+QY+ G QLTLRYG NPHQ PAQ F + LP L G+PG+INL DALN+W LVKEL+
Sbjct: 188 KQYAAGVDQLTLRYGANPHQSPAQAFMEQGPLPFKVLCGSPGYINLMDALNSWPLVKELR 247
Query: 688 EALSLPAAASFKHVSPAGAA 747
E + +PAAASFKHVSPAGAA
Sbjct: 248 ENIGIPAAASFKHVSPAGAA 267
Score = 112 bits (269), Expect = 6e-26
Identities = 51/82 (62%), Positives = 64/82 (78%)
Frame = +1
Query: 10 GLQLIASGGTARSLRNAGLTVQDVSDITRAPEMLGGRVKTLHPAVHAGILARLSDSDQED 189
G++L+ SGGTA+ +R +G+ V DVS IT APE+LGGRVKTLHPAVH GILAR SD++D
Sbjct: 24 GVKLLGSGGTAKMIRESGMEVADVSSITNAPEILGGRVKTLHPAVHGGILARDIPSDEKD 83
Query: 190 MKRQKYEMISVVVCNLYPFVQT 255
+ Q E I +VVCNLYPF +T
Sbjct: 84 LVEQSIEKIDIVVCNLYPFRET 105
Score = 57.2 bits (132), Expect = 2e-09
Identities = 30/65 (46%), Positives = 36/65 (55%)
Frame = +2
Query: 332 AKNHDRVTVVCDPADYDAVVKEIKENKHHQTTLGTRQRLALKAFTHTSDYDLAISDYFRS 511
AKNH RVT++ DPADY + +K T R ALKAF T+ YD AI+DYFR
Sbjct: 132 AKNHARVTILSDPADYATFTDKFLSDK---LTQDDRNTYALKAFASTASYDAAITDYFRK 188
Query: 512 NTRPG 526
G
Sbjct: 189 QYAAG 193
Score = 46.0 bits (104), Expect = 6e-06
Identities = 20/30 (66%), Positives = 25/30 (83%)
Frame = +3
Query: 240 PVRPDVSKPDVTVADAVENIDIGGVTLLRA 329
P R ++KP+VT+ +AVE IDIGGVTLLRA
Sbjct: 101 PFRETIAKPNVTIPEAVEEIDIGGVTLLRA 130
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 29.1 bits (62), Expect = 0.71
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -3
Query: 747 GSSGRGHVLEASRSREAQRFLQLLDELPG 661
G G+G S + AQ F Q+LDELPG
Sbjct: 266 GGGGKGIRQVTSTEKFAQAFQQVLDELPG 294
>SPBC887.09c |||leucine-rich repeat protein Sog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 886
Score = 28.3 bits (60), Expect = 1.2
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +3
Query: 63 PHSSRCVGHHESTGDARRSGENFTSSGTCWD 155
PHS GH +ST + S N S GT +D
Sbjct: 247 PHSHSPAGHQQSTPKSTLSKTNENSEGTLYD 277
>SPBC32F12.03c |gpx1||glutathione peroxidase
Gpx1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 158
Score = 27.5 bits (58), Expect = 2.2
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = -1
Query: 623 PFSVVIGKLSLVVNTWAGF*CGFIPYLK 540
PFS + GK+ LVVNT + CGF P K
Sbjct: 18 PFSNLKGKVVLVVNTASK--CGFTPQYK 43
>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1077
Score = 27.5 bits (58), Expect = 2.2
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Frame = +1
Query: 538 TLRYGMNPHQKPAQVFTTRDSLPITT----LNGAPGFINLCDALNAWQLVKELKEALS 699
T+RY + PH KP T R + + L A NL D +A+QLV E LS
Sbjct: 944 TIRYAVYPHSKPLDSSTVRAAHKFNSNFRLLTRASDTANL-DIFDAFQLVGEPNVILS 1000
>SPAC1D4.03c |aut12||autophagy associated protein
Aut12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 27.1 bits (57), Expect = 2.9
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 643 LCDALNAWQLVKELKEALSLPAAASFK 723
LCD LN ++LV L LP +SF+
Sbjct: 237 LCDQLNDYELVPTLNAISPLPLRSSFR 263
>SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 578
Score = 26.6 bits (56), Expect = 3.8
Identities = 20/59 (33%), Positives = 27/59 (45%)
Frame = +2
Query: 356 VVCDPADYDAVVKEIKENKHHQTTLGTRQRLALKAFTHTSDYDLAISDYFRSNTRPGKP 532
V CD DY V+KE + Q+ L + L+ F SD L ++ F N PG P
Sbjct: 286 VACDCPDYFDVIKEPMDLSTIQSKLNKNEYSTLEEF--ESDILLMFNNCFTYNP-PGTP 341
>SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 794
Score = 26.6 bits (56), Expect = 3.8
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = -2
Query: 409 VLFDFFDY-SIVVGRVTDDGDPVVVLGCARRRVTP-PMSMFSTASATVTSGLDTSG 248
++ D FDY S + +T G PVV L R P PM + TV S +DT G
Sbjct: 562 IITDDFDYTSDLTSFLTFAGIPVVNLAFERNEENPTPMPFLGSCEDTV-SWIDTFG 616
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 26.6 bits (56), Expect = 3.8
Identities = 19/56 (33%), Positives = 25/56 (44%)
Frame = +3
Query: 483 TSPYRTTSAAILARASPTDLKIRYEPTSEAGPGIHDQRQLADHDTERCAWIYQPVR 650
TSPY TTS+ I +P D+ P++ G +D L R A PVR
Sbjct: 833 TSPYATTSSHI----TPADVHPLPPPSTSTTAGWNDAPMLGQLPMRRAAPSMAPVR 884
>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 26.2 bits (55), Expect = 5.0
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
Frame = +1
Query: 514 YSPGQAQLTLRYGMNP------HQKPAQVFTTRDSLPITTLNGAPGFINLCDALNAWQLV 675
Y P Q LT +G+NP + ++ SL + ++ PGF + D + WQ V
Sbjct: 121 YPPTQKSLTGDFGVNPEPTVMINSSAVEIVENGISLQLNVID-TPGFGDFIDNTDCWQPV 179
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 25.8 bits (54), Expect = 6.6
Identities = 10/29 (34%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = +1
Query: 634 FINLCDALNA--WQLVKELKEALSLPAAA 714
F+N D + A W++++++ L +PAAA
Sbjct: 203 FVNKMDRMGADPWKVIQQINTKLKIPAAA 231
>SPAC29B12.10c |||OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 851
Score = 25.8 bits (54), Expect = 6.6
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +3
Query: 489 PYRTTSAAILARASPTDLKIRYEPTSEAGPGIHDQRQLADHDTE 620
P+RT S++ SP D I P+ G+H D++T+
Sbjct: 73 PFRTNSSSF----SPNDYSISESPSKSKKDGVHVSAVQLDNETD 112
>SPCC4B3.09c |||mitochondrial ribosomal protein subunit
L12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 206
Score = 25.8 bits (54), Expect = 6.6
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 637 INLCDALNAWQLVKELKEALSLPAAASFKHVSPAGAA 747
I+ L +LVK+LKE L++ A V+PA A+
Sbjct: 84 ISSLSLLETSELVKQLKEKLNIAEIAPMAAVAPAVAS 120
>SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 396
Score = 25.4 bits (53), Expect = 8.7
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -2
Query: 517 SIAAEVVRYGEVIVRSMSERLQG*SLPCAQSRLMMFVLFDFFDYSIV 377
S+AA +GE+ +S R SLPC S + LF Y ++
Sbjct: 104 SLAAISSSFGEISFLHLSSRYHSVSLPCWSSGTGLAGLFGASSYLVM 150
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 25.4 bits (53), Expect = 8.7
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = -1
Query: 740 PAGDTCLKLAAAGRLSASFSSLTSCQAFSASHRLINPGAPFSVVIGKLS 594
P GD+ + A SAS SS T+ + S S +I G+ + V L+
Sbjct: 137 PRGDSATSTSIAPTYSASDSSATTITSSSPSTSIIGTGSTDTSVSSTLT 185
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,861,379
Number of Sequences: 5004
Number of extensions: 56313
Number of successful extensions: 200
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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