Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021283
(749 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0703 + 6212409-6212456,6212661-6212742,6214031-6214106,621... 79 4e-15
10_08_0415 - 17761594-17762382 33 0.24
08_01_0621 - 5426210-5427787 32 0.56
09_04_0652 - 19227686-19227926,19229368-19232294 31 0.74
07_03_0439 + 18212584-18213065,18214164-18215010 30 2.3
06_01_0602 - 4342333-4342790,4342899-4345623 30 2.3
06_03_1219 - 28491185-28494415 29 3.0
12_01_0798 + 7314885-7314953,7315324-7315387,7315489-7315677,731... 29 3.9
02_01_0417 - 3048519-3048710,3048903-3050600,3050622-3050909,305... 28 6.9
02_01_0412 - 3005600-3007759 28 6.9
08_02_1338 - 26244928-26245159,26246420-26247374,26247921-26249187 28 9.1
06_03_1214 + 28469848-28473048 28 9.1
06_01_0785 - 5873244-5873357,5873458-5873562,5874333-5874424,587... 28 9.1
03_01_0112 + 902459-902770,903275-903280 28 9.1
>08_01_0703 +
6212409-6212456,6212661-6212742,6214031-6214106,
6214498-6214594,6214760-6214862,6214973-6215103,
6215285-6215462,6215528-6215715,6215945-6216154,
6216231-6216578,6216660-6216786,6217304-6217455
Length = 579
Score = 79.0 bits (186), Expect = 4e-15
Identities = 41/80 (51%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Frame = +1
Query: 10 GLQLIASGGTARSLRNAGLTVQDVSDITRAPEMLGGRVKTLHPAVHAGILARLSDSDQ-E 186
G +I++GGTA SL AG+ V V IT PEML GRVKTLHP+VH GILAR +
Sbjct: 69 GFSIISTGGTASSLEAAGVNVTKVEQITNFPEMLDGRVKTLHPSVHGGILARRDQEHHLK 128
Query: 187 DMKRQKYEMISVVVCNLYPF 246
+ VVV NLYPF
Sbjct: 129 ALNEHGIGTFDVVVVNLYPF 148
Score = 41.9 bits (94), Expect = 5e-04
Identities = 22/57 (38%), Positives = 34/57 (59%)
Frame = +2
Query: 332 AKNHDRVTVVCDPADYDAVVKEIKENKHHQTTLGTRQRLALKAFTHTSDYDLAISDY 502
AKNH V V+ D DY A+++ ++ + Q R+ LA KAF H + YD A+S++
Sbjct: 178 AKNHKDVLVMVDHEDYPALLEYLQGKQDDQQF---RKMLAWKAFQHVASYDSAVSEW 231
Score = 38.7 bits (86), Expect = 0.005
Identities = 32/98 (32%), Positives = 41/98 (41%), Gaps = 12/98 (12%)
Frame = +1
Query: 490 HIG-LLPQQYS-PGQAQLTLRYGMNPHQKPAQVFTTRDSLPITTLNGAP----------G 633
H+G + P ++ P + TLRYG NPHQK A F SL + G
Sbjct: 247 HVGDVFPPNFTVPLSLKSTLRYGENPHQKAA--FYGDKSLSVVNAGGIATAIQHHGKEMS 304
Query: 634 FINLCDALNAWQLVKELKEALSLPAAASFKHVSPAGAA 747
+ N DA AW V E + P KH +P G A
Sbjct: 305 YNNYLDADAAWNCVSEFES----PTCVVVKHTNPCGVA 338
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 240 PVRPDVSKPDVTVADAVENIDIGGVTLLRA 329
P V+ ++ D +ENIDIGG T++RA
Sbjct: 147 PFYNKVTSGVISFEDGIENIDIGGPTMIRA 176
>10_08_0415 - 17761594-17762382
Length = 262
Score = 33.1 bits (72), Expect = 0.24
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +3
Query: 30 WRYRQVASERRPHSSRCVGHHESTGDARRSGENFTSSGTCWDLSSIIR 173
WRY+ VA R +S C G + + GE + +G C D++ I+R
Sbjct: 121 WRYKGVA---RQSASMCCGQLDHSSGMHDDGEVWLRAGPCSDIAGIVR 165
>08_01_0621 - 5426210-5427787
Length = 525
Score = 31.9 bits (69), Expect = 0.56
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -2
Query: 388 YSIVVGRVTDDGDPVVVLGCARRRVTPP 305
YS+ GR+ DDGD + + C RR V+ P
Sbjct: 140 YSLAEGRMCDDGDVRLPMACRRRYVSSP 167
>09_04_0652 - 19227686-19227926,19229368-19232294
Length = 1055
Score = 31.5 bits (68), Expect = 0.74
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +3
Query: 42 QVASERRPHSSRCVGHHESTGDARRSGENFTSSGTCW 152
QV SE+ P S C S + ++G + GTCW
Sbjct: 444 QVVSEKEPEPSECSESCASVPNLEQTGTSNVEDGTCW 480
>07_03_0439 + 18212584-18213065,18214164-18215010
Length = 442
Score = 29.9 bits (64), Expect = 2.3
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = +3
Query: 204 VRDDKRGGL*PVPVRPDVSKPDVTVADAVENIDIGGVTLLRAQPRTTTGSPSSVTRPTTM 383
V D + GG P+P++ V +P V AVE+++ GG LR +P G P +
Sbjct: 257 VEDAEGGGAPPLPLQLHV-RP--AVEGAVEDVEGGGALPLRVRPAVVEGGVGVGAEPQAL 313
Query: 384 L 386
+
Sbjct: 314 V 314
>06_01_0602 - 4342333-4342790,4342899-4345623
Length = 1060
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -1
Query: 704 GRLSASFSSLTSCQAFSASHRLINPGAPFSVVIG 603
G + A+ S+LT+ A + SH LIN P + V G
Sbjct: 359 GAIPANLSNLTNLTALNLSHNLINGSIPPAAVAG 392
>06_03_1219 - 28491185-28494415
Length = 1076
Score = 29.5 bits (63), Expect = 3.0
Identities = 21/79 (26%), Positives = 35/79 (44%)
Frame = -2
Query: 340 VLGCARRRVTPPMSMFSTASATVTSGLDTSGRTGTGYRPPRLSSRTSDVSCLPGQSRIIE 161
+L + R+T P+ + + + LD SG +G PP L ++ L + + E
Sbjct: 477 ILNLSGNRLTGPIPSWLGGMSKLYY-LDLSGNLLSGEIPPSLK----EIRLLTSEQAMAE 531
Query: 160 LRSQHVPLDVKFSPDLRAS 104
H+PL PD RA+
Sbjct: 532 FNPGHLPLMFSVKPDRRAA 550
>12_01_0798 +
7314885-7314953,7315324-7315387,7315489-7315677,
7316430-7316625,7316727-7316953,7317177-7318134,
7320104-7321307,7321517-7321876,7321965-7323195,
7323334-7323599,7323738-7326335
Length = 2453
Score = 29.1 bits (62), Expect = 3.9
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Frame = +1
Query: 523 GQAQLTLRYGMNPHQKPAQVFTTRDSLPITTLNGA----PGFINLCDALNAWQLVKELKE 690
G LR G + + P V+T D + T NGA G + + D LN L+KE E
Sbjct: 87 GNRITVLRKG-DGYASPCGVYTNNDRMAFFT-NGAWLEAQGILGVVDDLNTLHLIKENGE 144
Query: 691 ALS 699
AL+
Sbjct: 145 ALT 147
>02_01_0417 -
3048519-3048710,3048903-3050600,3050622-3050909,
3052308-3052377,3052417-3052668,3053235-3055297
Length = 1520
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = -1
Query: 704 GRLSASFSSLTSCQAFSASHRLINPGAPFSVVIGKLSLVV 585
GR+S S LTS + S+ L++ G P S +I S+VV
Sbjct: 93 GRISLSLRELTSLSRLNLSYNLLSGGLP-SELISTSSIVV 131
>02_01_0412 - 3005600-3007759
Length = 719
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = -1
Query: 704 GRLSASFSSLTSCQAFSASHRLINPGAPFSVVIGKLSLVV 585
G +S+S S LTS + S+ L++ G P S +I S+VV
Sbjct: 94 GCISSSLSELTSLSRLNLSYNLLSDGLP-SELISTSSIVV 132
>08_02_1338 - 26244928-26245159,26246420-26247374,26247921-26249187
Length = 817
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = -2
Query: 484 VIVRSMSERLQG*SLPCAQSRLMMFVLFDFFDYSIVVGRVTDDGDPVVVLGCAR 323
+++ + R+ G P S ++ +L D F + V D DPV++LGC R
Sbjct: 224 LVLGKLRARMSGPDAP-PPSGMLGIILHDLFVATESVSYTRDLLDPVMLLGCVR 276
>06_03_1214 + 28469848-28473048
Length = 1066
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = -1
Query: 704 GRLSASFSSLTSCQAFSASHRLINPGAPFSVVIGKLSLVVNTWAGF*CGFIPYLK 540
GR+S S +LT + SH L+N P ++ + +V++ G +P L+
Sbjct: 103 GRISPSLGNLTGLLHLNLSHNLLNGYLPMELLFSRSIIVLDVSFNRLDGSLPELE 157
>06_01_0785 -
5873244-5873357,5873458-5873562,5874333-5874424,
5874525-5874594,5875080-5875202,5875287-5875372,
5875547-5875648,5875874-5876096,5876217-5876282,
5876407-5876497,5876574-5876701,5877734-5877749,
5878171-5878318,5878440-5878511,5878586-5878690,
5879122-5879291,5880093-5880424
Length = 680
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +3
Query: 234 PVPVRPDVSKPDVTVADAV 290
PVP+ PD PDV+ AD V
Sbjct: 171 PVPLTPDYGGPDVSYADGV 189
>03_01_0112 + 902459-902770,903275-903280
Length = 105
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = -3
Query: 117 TSEHLRCSRDVRHILNCEAGVPK 49
T+ LR RD RH+ CE+GVPK
Sbjct: 58 TATRLRL-RDGRHLAYCESGVPK 79
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,015,297
Number of Sequences: 37544
Number of extensions: 447421
Number of successful extensions: 1600
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1598
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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