Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021283
(749 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47576| Best HMM Match : No HMM Matches (HMM E-Value=.) 128 5e-30
SB_57127| Best HMM Match : MGS (HMM E-Value=0.25) 50 2e-06
SB_58882| Best HMM Match : EGF_CA (HMM E-Value=0) 34 0.14
SB_4314| Best HMM Match : 4_1_CTD (HMM E-Value=1.8) 30 2.3
SB_12027| Best HMM Match : Extensin_2 (HMM E-Value=0.2) 30 2.3
SB_53319| Best HMM Match : zf-CW (HMM E-Value=7.7e-17) 29 3.0
SB_25293| Best HMM Match : DUF1665 (HMM E-Value=0.098) 29 3.0
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0) 29 4.0
SB_34195| Best HMM Match : Init_tRNA_PT (HMM E-Value=2.7) 28 7.0
SB_12724| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_55329| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_55283| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_49126| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_48435| Best HMM Match : Ion_trans (HMM E-Value=1.7e-11) 28 7.0
SB_15008| Best HMM Match : RVT_1 (HMM E-Value=0.48) 28 7.0
SB_11116| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_27562| Best HMM Match : Chromo_shadow (HMM E-Value=4.6) 28 9.3
SB_57246| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_12895| Best HMM Match : C1_3 (HMM E-Value=0.03) 28 9.3
>SB_47576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 896
Score = 128 bits (309), Expect = 5e-30
Identities = 58/84 (69%), Positives = 71/84 (84%)
Frame = +1
Query: 4 ECGLQLIASGGTARSLRNAGLTVQDVSDITRAPEMLGGRVKTLHPAVHAGILARLSDSDQ 183
+ G +L+ASGGTA ++RNAG+ V+DVS+IT APEMLGGRVKTLHPAVH GILAR+S+ D+
Sbjct: 55 DLGFRLVASGGTANAIRNAGIPVRDVSEITGAPEMLGGRVKTLHPAVHGGILARVSEGDK 114
Query: 184 EDMKRQKYEMISVVVCNLYPFVQT 255
DM +Q +E I VVVCNLYPFV T
Sbjct: 115 ADMAKQGFEYIRVVVCNLYPFVNT 138
Score = 125 bits (301), Expect = 4e-29
Identities = 54/80 (67%), Positives = 65/80 (81%)
Frame = +1
Query: 508 QQYSPGQAQLTLRYGMNPHQKPAQVFTTRDSLPITTLNGAPGFINLCDALNAWQLVKELK 687
++YS + + LRYGMNPHQKPAQ+ T LP+ LNGAPGFINLCDA N+WQLV+EL
Sbjct: 224 KEYSENVSHIPLRYGMNPHQKPAQLMTMEPELPVKVLNGAPGFINLCDAFNSWQLVRELH 283
Query: 688 EALSLPAAASFKHVSPAGAA 747
++L +PAAASFKHVSPAGAA
Sbjct: 284 QSLGIPAAASFKHVSPAGAA 303
Score = 85.0 bits (201), Expect = 6e-17
Identities = 38/59 (64%), Positives = 47/59 (79%)
Frame = +2
Query: 332 AKNHDRVTVVCDPADYDAVVKEIKENKHHQTTLGTRQRLALKAFTHTSDYDLAISDYFR 508
AKNH+RVTVVCDP DY+ V+ E+ EN+ T TR+ LALKAF+HT+ YD+AISDYFR
Sbjct: 165 AKNHERVTVVCDPEDYNKVLSEMTENETCDTLPDTRKTLALKAFSHTASYDMAISDYFR 223
Score = 37.5 bits (83), Expect = 0.011
Identities = 18/25 (72%), Positives = 21/25 (84%)
Frame = +3
Query: 255 VSKPDVTVADAVENIDIGGVTLLRA 329
V+K V V++AVE IDIGGVTLLRA
Sbjct: 139 VAKEGVIVSEAVEQIDIGGVTLLRA 163
>SB_57127| Best HMM Match : MGS (HMM E-Value=0.25)
Length = 79
Score = 50.4 bits (115), Expect = 2e-06
Identities = 22/34 (64%), Positives = 27/34 (79%)
Frame = +1
Query: 154 ILARLSDSDQEDMKRQKYEMISVVVCNLYPFVQT 255
ILAR+S+ D+ DM +Q +E I VVVCNLYPFV T
Sbjct: 2 ILARVSEGDKADMAKQGFEYIRVVVCNLYPFVNT 35
Score = 37.5 bits (83), Expect = 0.011
Identities = 18/25 (72%), Positives = 21/25 (84%)
Frame = +3
Query: 255 VSKPDVTVADAVENIDIGGVTLLRA 329
V+K V V++AVE IDIGGVTLLRA
Sbjct: 36 VAKEGVIVSEAVEQIDIGGVTLLRA 60
Score = 37.1 bits (82), Expect = 0.015
Identities = 14/17 (82%), Positives = 16/17 (94%)
Frame = +2
Query: 332 AKNHDRVTVVCDPADYD 382
AKNH+RVTVVCDP DY+
Sbjct: 62 AKNHERVTVVCDPEDYN 78
>SB_58882| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 1027
Score = 33.9 bits (74), Expect = 0.14
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -1
Query: 320 EGHAADVDVLDRVRHGHVRL-RYVWTNGYRLQTTT 219
+G+ D LDRV H ++RL R VW YRL TT
Sbjct: 650 KGNGTDCVALDRVYHINLRLSRTVWRENYRLSNTT 684
>SB_4314| Best HMM Match : 4_1_CTD (HMM E-Value=1.8)
Length = 922
Score = 29.9 bits (64), Expect = 2.3
Identities = 25/106 (23%), Positives = 44/106 (41%), Gaps = 1/106 (0%)
Frame = +3
Query: 66 HSSRCVGHHESTGDARRSGENFTSSGTCWDLSSIIRL*PGRHETSEVRDDKRGGL*PVPV 245
H+S G HE SG+ TSSG+ S+ + GR +S + + + L +P+
Sbjct: 695 HASHIAGSHEQL-----SGQ--TSSGSVGSPKSLSQRSRGREGSSASKSNSKSSLSSIPI 747
Query: 246 R-PDVSKPDVTVADAVENIDIGGVTLLRAQPRTTTGSPSSVTRPTT 380
R P T A+ + + L P+ ++ + RP +
Sbjct: 748 RVPRPPSSQKTQANTASQASVDTASPLPRSPKRSSPILPPINRPAS 793
>SB_12027| Best HMM Match : Extensin_2 (HMM E-Value=0.2)
Length = 1706
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = +2
Query: 344 DRVTVVCDPADYDAVVKEIKE-NKHHQTTL 430
D + CDPA+ +A++ I+E N+HHQ L
Sbjct: 1447 DGILRTCDPAELEALLMLIEEQNEHHQKVL 1476
>SB_53319| Best HMM Match : zf-CW (HMM E-Value=7.7e-17)
Length = 714
Score = 29.5 bits (63), Expect = 3.0
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +3
Query: 234 PVPVRPDVSKPDVTVADAVENIDIGGVTLLRAQPRT--TTGSPSSVTR 371
PV + + +A AV N+ + T LR P T TTGSPS VTR
Sbjct: 232 PVSTNTSPANTPMKIAPAVTNL-VTLSTALRVLPSTSATTGSPSFVTR 278
>SB_25293| Best HMM Match : DUF1665 (HMM E-Value=0.098)
Length = 1450
Score = 29.5 bits (63), Expect = 3.0
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Frame = -2
Query: 319 RVTPPMSMFSTASATVTSGLDTSG--RTGTG--YRPPRLSSRTSDVSCLPGQSRIIE 161
R T +M S++ +SG T+ R G+G + PRL+ R DV LPG+ +++
Sbjct: 1091 RSTLGSTMGSSSDFLSSSGYGTAAGARRGSGSVFASPRLAQRDDDVISLPGRMDLVD 1147
>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 1026
Score = 29.1 bits (62), Expect = 4.0
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -1
Query: 710 AAGRLSASFSSLTSCQAFSASHRLINP 630
AA +S F +T + FSASHRL NP
Sbjct: 881 AAVTMSRPFVYITRTETFSASHRLHNP 907
>SB_34195| Best HMM Match : Init_tRNA_PT (HMM E-Value=2.7)
Length = 597
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = -2
Query: 292 STASATVTSGLDTSGRTGTGYRPPRLSSRTSDVSCLPG 179
S+ + +SG DT+G+T PR+S R S+++ L G
Sbjct: 208 SSLELSPSSGQDTTGQTTPSVVQPRVSIRESNMTFLTG 245
>SB_12724| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 162
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -2
Query: 319 RVTPPMSMFSTASATVTSGLDTSGRTGTGYRPPRLS-SRTSDVS 191
R +P M ++S AS ++ G SGR G PP L+ S+ + +S
Sbjct: 55 RTSPDMELYSDASGSIGFGGYFSGRWFQGRWPPHLAISKKTGIS 98
>SB_55329| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 806
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -2
Query: 319 RVTPPMSMFSTASATVTSGLDTSGRTGTGYRPPRLS-SRTSDVS 191
R +P M ++S AS ++ G SGR G PP L+ S+ + +S
Sbjct: 467 RTSPDMELYSDASGSIGFGGYFSGRWFQGRWPPHLAISKKTGIS 510
>SB_55283| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1342
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -2
Query: 331 CARRRVTPPMSMFSTASATVTSGLDTSGRTGTGYRPP 221
C + P +S+ S V +D SG++G +RPP
Sbjct: 598 CIAQGKRPQLSLVRRVSLGVNELMDVSGKSGIQHRPP 634
>SB_49126| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 559
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -2
Query: 403 FDFFDYSIVVGRVTDDGDPVVVL 335
FDF D+SI+V ++T PVV++
Sbjct: 294 FDFIDHSILVDKLTYQARPVVIV 316
>SB_48435| Best HMM Match : Ion_trans (HMM E-Value=1.7e-11)
Length = 1496
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -2
Query: 316 VTPPMSMFSTASATVTSGLDTSGRTGTGYRPPRLSSRTSDVSCLPGQ 176
VTP + S A+ TS S + + PR+SS+ S V P Q
Sbjct: 1389 VTPASLIISQATKNATSSPTPSIKVTSATAVPRISSQASPVDVCPSQ 1435
>SB_15008| Best HMM Match : RVT_1 (HMM E-Value=0.48)
Length = 346
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -2
Query: 319 RVTPPMSMFSTASATVTSGLDTSGRTGTGYRPPRLS-SRTSDVS 191
R +P M ++S AS ++ G SGR G PP L+ S+ + +S
Sbjct: 262 RTSPDMELYSDASGSIGFGGYFSGRWFQGRWPPHLAISKKTGIS 305
>SB_11116| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1661
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -2
Query: 319 RVTPPMSMFSTASATVTSGLDTSGRTGTGYRPPRLS-SRTSDVS 191
R +P M ++S AS ++ G SGR G PP L+ S+ + +S
Sbjct: 772 RTSPDMELYSDASGSIGFGGYFSGRWFQGRWPPHLAISKKTGIS 815
>SB_27562| Best HMM Match : Chromo_shadow (HMM E-Value=4.6)
Length = 424
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = -2
Query: 250 GRTGTGYRPPRLSSRTSDVSCLPGQSRIIELRSQHVPLDVKFSPDLRASPVL 95
GR G YRPPR ++R + ++ + + +++ L P R+SP +
Sbjct: 231 GRKGRNYRPPRAATRPPRAAIRTSRAATVGRKGRNLALSRLLLPK-RSSPAI 281
>SB_57246| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 737
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +3
Query: 294 NIDIGGVTLLRAQPRTTTGSPSSVTRPTTML*SKKSKRTNIIRRL 428
N D+ + P PSS TR T +KK R+N+++++
Sbjct: 377 NWDLNPTDHTQFVPSKAAAKPSSPTRTTQQYHTKKGHRSNVVQKV 421
>SB_12895| Best HMM Match : C1_3 (HMM E-Value=0.03)
Length = 1832
Score = 27.9 bits (59), Expect = 9.3
Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 4/97 (4%)
Frame = -2
Query: 376 VGRVTDDGDPVVVLGCARRRVTPPMSMFSTASATVTSGLDTS--GRTGTGYRPPRLSSRT 203
VGR+ D G+ + GC+ R +PP S S +S+ +S S G T + ++P L + +
Sbjct: 385 VGRIPD-GEHLRP-GCSYYRGSPPSSRHSHSSSPTSSSTYPSPFGSTESPFQPRVLQNIS 442
Query: 202 SDVSCLPGQSRI--IELRSQHVPLDVKFSPDLRASPV 98
Q + + +H P+D SP + P+
Sbjct: 443 PQRQFASPQRSLGASPVSHRHTPVDKHTSPQHLSPPI 479
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,389,851
Number of Sequences: 59808
Number of extensions: 499948
Number of successful extensions: 2105
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2104
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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