Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021282
(770 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1 |Schizosacc... 87 3e-18
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac... 69 7e-13
SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3 |Schizosacc... 41 2e-04
SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2 |Schizosacc... 32 0.10
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces... 31 0.14
SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual 28 1.3
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 27 2.2
SPCC285.08 |ret2||coatomer delta subunit Ret2 |Schizosaccharomyc... 27 3.9
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 27 3.9
SPCC320.11c ||SPCC330.18|RNA-binding protein|Schizosaccharomyces... 26 5.2
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 26 5.2
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm... 26 5.2
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc... 26 6.9
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch... 25 9.1
>SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 87.0 bits (206), Expect = 3e-18
Identities = 37/94 (39%), Positives = 65/94 (69%)
Frame = +2
Query: 266 SFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLD 445
++ +I +++L A++K N +A + FL K+ DV YF ++ EE+I++NFVL+YELLD
Sbjct: 56 NYIYIHHNDVYLLALSKMNSDAMEMLVFLRKMADVFIDYFKELQEESIRDNFVLVYELLD 115
Query: 446 EILDFGYPQNSDTGVLKTFITSRASSLPPRRNKP 547
EI+DFG+PQ ++T +L+ +IT ++++ P
Sbjct: 116 EIMDFGFPQTTETKILQEYITQTSNTVKKHAPPP 149
Score = 46.8 bits (106), Expect = 3e-06
Identities = 19/42 (45%), Positives = 28/42 (66%)
Frame = +3
Query: 645 LVDVTASQVLSAHVAGKVVMKSYLSGMPECKFGINDKIVMEA 770
L+ V+ + + GKV +K YLSGMPE + G+NDK++ EA
Sbjct: 180 LIAAADGTVIQSEILGKVRLKCYLSGMPELRLGLNDKVLFEA 221
Score = 46.4 bits (105), Expect = 5e-06
Identities = 19/30 (63%), Positives = 24/30 (80%)
Frame = +1
Query: 562 VTGQIGWRREGIKYRRNELFLDVLEYVNLL 651
+T I WR EGI YR+NE+FLDV+E VNL+
Sbjct: 152 MTNAISWRSEGIHYRKNEVFLDVIESVNLI 181
Score = 34.3 bits (75), Expect = 0.020
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = +3
Query: 108 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAF 203
M +FV N KG+V+ISR YR DI + V+ F
Sbjct: 1 MASAIFVLNLKGKVIISRDYRADIPMSVVEKF 32
>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 446
Score = 68.9 bits (161), Expect = 7e-13
Identities = 29/88 (32%), Positives = 54/88 (61%)
Frame = +2
Query: 254 LARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIY 433
+ +++ + K ++++ A+TK N N +V EFL +I + YFGK++E +K+N I+
Sbjct: 49 IGSSTYIYTKHEDLYVVAITKGNPNVMIVLEFLESLIQDLTHYFGKLNENTVKDNVSFIF 108
Query: 434 ELLDEILDFGYPQNSDTGVLKTFITSRA 517
ELLDE++D+G Q ++ L ++ A
Sbjct: 109 ELLDEMIDYGIIQTTEPDALARSVSITA 136
Score = 49.6 bits (113), Expect = 5e-07
Identities = 19/46 (41%), Positives = 33/46 (71%)
Frame = +1
Query: 520 KSASKEEQAQITSQVTGQIGWRREGIKYRRNELFLDVLEYVNLLMS 657
+S S + +S++ G + WRR GIKYR+N +++D++E +NLL+S
Sbjct: 148 RSHSSQLAHTTSSEIPGSVPWRRAGIKYRKNSIYIDIVERMNLLIS 193
Score = 44.4 bits (100), Expect = 2e-05
Identities = 18/34 (52%), Positives = 26/34 (76%)
Frame = +3
Query: 657 TASQVLSAHVAGKVVMKSYLSGMPECKFGINDKI 758
+ VL + V+G V M++ LSGMPEC+FG+NDK+
Sbjct: 194 STGNVLRSDVSGVVKMRAMLSGMPECQFGLNDKL 227
Score = 42.3 bits (95), Expect = 7e-05
Identities = 17/50 (34%), Positives = 31/50 (62%)
Frame = +3
Query: 108 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNL 257
MI GLF++N KG+ LI + +R D+ ++ + FRV ++ R P+ ++
Sbjct: 1 MISGLFIFNLKGDTLICKTFRHDLKKSVTEIFRVAIL-TNTDYRHPIVSI 49
>SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 425
Score = 41.1 bits (92), Expect = 2e-04
Identities = 16/72 (22%), Positives = 39/72 (54%)
Frame = +2
Query: 290 NIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFGYP 469
++ L T + + + + +I+DV++++FG + ++ N +I +LL E++D+GY
Sbjct: 66 DVRLCIPTTCDTEPLYIHDIMRRIVDVVKTFFGGFNASKVEKNVCVIVQLLAEMIDYGYA 125
Query: 470 QNSDTGVLKTFI 505
+ L+ +
Sbjct: 126 TCMEPNALQDIV 137
Score = 30.3 bits (65), Expect = 0.32
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 574 IGWRREGIKYRRNELFLDVLEYVNLLMSPQVKCSLLT 684
+ WR KY NE F+ VLE V+ + P K + T
Sbjct: 164 VPWRTAKAKYATNEFFIHVLERVSAVYQPNGKLAFGT 200
>SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 143
Score = 31.9 bits (69), Expect = 0.10
Identities = 13/56 (23%), Positives = 28/56 (50%)
Frame = +2
Query: 287 ANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEIL 454
A ++ N + E + ++++ S+FG + E ++ NF + +LDEI+
Sbjct: 64 AGLYFCFCVDSTDNDLAILEMIHFFVEILDSFFGNVCELDLIFNFYKVSAILDEII 119
>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 879
Score = 31.5 bits (68), Expect = 0.14
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = -1
Query: 476 NSEGNQSPRSHQATHRSEQSYS*CSLQKSCQNTIASHQ*SSTGTQIPWPRSHFAL 312
+S + RS AT +S++S S + S T S+ ++ TQ+ WP +H L
Sbjct: 719 DSGSRRVTRSQNATSQSQESGS--EIGSSIAGTAGSYNVGTSNTQLSWPSTHSTL 771
>SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 483
Score = 28.3 bits (60), Expect = 1.3
Identities = 12/46 (26%), Positives = 29/46 (63%)
Frame = +2
Query: 275 HIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIK 412
+I+ N + + +++ + A++ E +++DV QS+ G + EEN++
Sbjct: 414 NIEITNPIIVSPVERSRSQALLNEIQTRVLDVRQSHGGVVLEENVR 459
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 27.5 bits (58), Expect = 2.2
Identities = 14/50 (28%), Positives = 20/50 (40%)
Frame = -1
Query: 209 HSECVHSITTNIISVDSRDQHLAFMVINEQAPDHCG*GLTLFQNWFQCNC 60
H +C + T IS S + IN + P H + NW C+C
Sbjct: 442 HKKCYPKVVTKCISKSSDSASSEYEKINHRIPHHFESHTNIGANWC-CHC 490
>SPCC285.08 |ret2||coatomer delta subunit Ret2 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 240
Score = 26.6 bits (56), Expect = 3.9
Identities = 15/71 (21%), Positives = 27/71 (38%)
Frame = +2
Query: 293 IWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFGYPQ 472
+++ +T N + L + V+ S + E I I+ DE GY
Sbjct: 64 LYIVLITNLQSNILQDIDTLHLLSQVVTSICSSLEEREILEYAFEIFTAFDEATSLGYRD 123
Query: 473 NSDTGVLKTFI 505
N +KT++
Sbjct: 124 NVSLTQIKTYL 134
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 26.6 bits (56), Expect = 3.9
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +2
Query: 374 QSYFGKISEENIKNNFVLIYELLDEILDFGYPQNSDTGVLKTFITSRA 517
+ + KI EE +K N +L YE D +S ++KTF +A
Sbjct: 952 KDFVTKIEEETLKENPLLFYEYRKASSDMRVLMDSQFLMMKTFARLQA 999
>SPCC320.11c ||SPCC330.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 180
Score = 26.2 bits (55), Expect = 5.2
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +2
Query: 368 VMQSYFGKISEENIKNNFVLIYELLDEILDFGYPQNS 478
V++++ G+I+++ ++ V+IY + D L FG S
Sbjct: 113 VLKAHVGRITDDTPQHQGVVIYSMNDTPLGFGVTARS 149
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 26.2 bits (55), Expect = 5.2
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +3
Query: 213 VIHARQQVRSPVTNLHAHLSSISSVQIFGWQQSQSK 320
V+ Q + SP T++ +LS ++F W + Q K
Sbjct: 3556 VMSIAQSLSSPTTDIKQYLSLYVRDEVFWWSKQQRK 3591
>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1292
Score = 26.2 bits (55), Expect = 5.2
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = -1
Query: 497 SSGPQYQNSEGNQSPRSHQATHRSEQSYS*CSLQKSCQNTIASHQ*SSTGTQIP 336
SS P +SE NQ P S Q +Y+ ++ S + SS+GT P
Sbjct: 10 SSRPPSVHSERNQKPSSSQFLGVPSSNYNQRENSSRSGSSTISREPSSSGTMYP 63
>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 878
Score = 25.8 bits (54), Expect = 6.9
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +3
Query: 24 YVQFLKGCNR*IAITLKPILKECEASPTMIGGLFVYNHKGEVLISRVYRDDIGRNAVD 197
+V ++ G R I + L P+L PT+ +NH G++ + R + G N+ D
Sbjct: 737 HVSYVTGVIRSIDLQL-PVLLSKFMKPTIFDSYDFFNHWGQMGVEREAQLTFGLNSKD 793
>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1030
Score = 25.4 bits (53), Expect = 9.1
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -2
Query: 352 QELKYHGRVHILLCDCCQPNICTLDMEERCACKLVTGD 239
+ELK RV L C N+ +D++ R AC++ +GD
Sbjct: 836 RELKIRQRVLRRLGFCTLENV--IDIKGRVACEITSGD 871
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,308,328
Number of Sequences: 5004
Number of extensions: 70194
Number of successful extensions: 205
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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