Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021282
(770 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0373 + 28374298-28374380,28375126-28375303,28375975-283760... 92 4e-19
01_06_0412 + 29159918-29160046,29160148-29160297,29160385-291604... 91 7e-19
05_06_0262 - 26746180-26746278,26746371-26746493,26746584-267467... 89 3e-18
07_03_1297 + 25587445-25587502,25587646-25587740,25588426-255886... 85 6e-17
05_04_0141 - 18364065-18364176,18364722-18364948,18365183-183653... 65 7e-11
03_06_0198 - 32299480-32299643,32300084-32300126,32300843-323009... 38 0.009
02_05_0128 - 26059348-26059437,26059553-26059759 32 0.58
04_04_0190 - 23442824-23442846,23442891-23442949,23443613-234437... 30 2.4
10_06_0127 - 11027692-11027826,11027925-11027993,11029925-110300... 28 7.2
01_07_0067 - 40857544-40858164,40858265-40858370,40858541-408586... 28 7.2
>02_05_0373 +
28374298-28374380,28375126-28375303,28375975-28376065,
28376162-28376256,28376379-28376468,28376789-28376837,
28376941-28377079,28377224-28377340,28377437-28377527,
28377604-28377746,28378009-28378123,28378439-28378483,
28378565-28378645
Length = 438
Score = 92.3 bits (219), Expect = 4e-19
Identities = 42/100 (42%), Positives = 62/100 (62%), Gaps = 1/100 (1%)
Frame = +2
Query: 233 GAITCYQLARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFG-KISEENI 409
G Q+ SF +++ +N+++ V N N A F+F+++ + + +SYFG E+ I
Sbjct: 46 GTCPVRQIGGCSFLYMRISNVYIVIVVSSNANVACAFKFVVEAVALFKSYFGGAFDEDAI 105
Query: 410 KNNFVLIYELLDEILDFGYPQNSDTGVLKTFITSRASSLP 529
+NNFVLIYELLDEI+DFGYPQN +LK +IT P
Sbjct: 106 RNNFVLIYELLDEIMDFGYPQNLSPEILKLYITQEGVRSP 145
Score = 59.3 bits (137), Expect = 3e-09
Identities = 24/35 (68%), Positives = 31/35 (88%)
Frame = +1
Query: 553 TSQVTGQIGWRREGIKYRRNELFLDVLEYVNLLMS 657
T QVTG +GWRREG+ Y++NE+FLD++E VNLLMS
Sbjct: 159 TLQVTGAVGWRREGLMYKKNEVFLDIVESVNLLMS 193
Score = 50.8 bits (116), Expect = 1e-06
Identities = 20/52 (38%), Positives = 34/52 (65%)
Frame = +3
Query: 102 PTMIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNL 257
P ++ N +G+VLI+R+YRDD+G N VDAFR++++ ++ PV +
Sbjct: 2 PVAASAIYFLNLRGDVLINRLYRDDVGGNMVDAFRMHIMQTKELGTCPVRQI 53
Score = 45.2 bits (102), Expect = 6e-05
Identities = 19/33 (57%), Positives = 25/33 (75%)
Frame = +3
Query: 669 VLSAHVAGKVVMKSYLSGMPECKFGINDKIVME 767
VL V GK++MK +LSGMP+ K G+NDKI +E
Sbjct: 198 VLRCDVTGKILMKCFLSGMPDLKLGLNDKIGLE 230
>01_06_0412 +
29159918-29160046,29160148-29160297,29160385-29160447,
29160540-29160716,29160796-29160899,29162142-29162249,
29162336-29162432,29162540-29162637,29162718-29162859,
29162941-29163063,29163161-29163259
Length = 429
Score = 91.5 bits (217), Expect = 7e-19
Identities = 40/108 (37%), Positives = 69/108 (63%)
Frame = +2
Query: 224 SPAGAITCYQLARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEE 403
S A + Y A ++ I+ N++L ++QN NAA + FL +++DV + YF ++ EE
Sbjct: 46 SEAHSPVVYDDAGVTYMFIQHNNVFLLTASRQNCNAASILLFLHRVVDVFKHYFEELEEE 105
Query: 404 NIKNNFVLIYELLDEILDFGYPQNSDTGVLKTFITSRASSLPPRRNKP 547
++++NFV++YELLDE++DFGYPQ ++ +L FI + A + + P
Sbjct: 106 SLRDNFVVVYELLDEMMDFGYPQYTEAKILSEFIKTDAYRMEVSQRPP 153
Score = 49.6 bits (113), Expect = 3e-06
Identities = 18/35 (51%), Positives = 29/35 (82%)
Frame = +3
Query: 666 QVLSAHVAGKVVMKSYLSGMPECKFGINDKIVMEA 770
Q++ + V G + M++YLSGMPECK G+ND++++EA
Sbjct: 191 QIVRSDVVGALKMRTYLSGMPECKLGLNDRVLLEA 225
Score = 47.6 bits (108), Expect = 1e-05
Identities = 18/32 (56%), Positives = 27/32 (84%)
Frame = +1
Query: 562 VTGQIGWRREGIKYRRNELFLDVLEYVNLLMS 657
VT + WR EGI+Y++NE+FLDV+E VN+L++
Sbjct: 156 VTNAVSWRSEGIRYKKNEVFLDVVESVNILVN 187
>05_06_0262 -
26746180-26746278,26746371-26746493,26746584-26746725,
26746824-26746921,26747012-26747108,26747215-26747322,
26747900-26748003,26748170-26748268,26748373-26748435,
26748538-26748687,26748769-26748900
Length = 404
Score = 89.4 bits (212), Expect = 3e-18
Identities = 37/87 (42%), Positives = 62/87 (71%)
Frame = +2
Query: 257 ARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYE 436
A S+ I+ N++L ++QN NAA + FL +++DV + YF ++ EE++++NFV++YE
Sbjct: 58 AGVSYMFIQHNNVFLLTASRQNCNAASILLFLHRVVDVFKHYFEELEEESLRDNFVVVYE 117
Query: 437 LLDEILDFGYPQNSDTGVLKTFITSRA 517
LLDE++DFGYPQ ++ +L FI + A
Sbjct: 118 LLDEMMDFGYPQYTEAMILSEFIKTDA 144
Score = 48.4 bits (110), Expect = 6e-06
Identities = 17/35 (48%), Positives = 30/35 (85%)
Frame = +3
Query: 666 QVLSAHVAGKVVMKSYLSGMPECKFGINDKIVMEA 770
Q++ + V G++ M+++LSGMPECK G+ND++++EA
Sbjct: 166 QIVRSDVIGELKMRTFLSGMPECKLGLNDRVLLEA 200
>07_03_1297 +
25587445-25587502,25587646-25587740,25588426-25588629,
25588843-25588959,25589084-25589212,25589591-25589717,
25590174-25590277,25590369-25590473,25590969-25591190,
25591869-25591967
Length = 419
Score = 85.0 bits (201), Expect = 6e-17
Identities = 37/94 (39%), Positives = 62/94 (65%), Gaps = 5/94 (5%)
Frame = +2
Query: 266 SFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLD 445
++ H+K A ++ T NV+ +++ E L +I V + Y G ++E++++ NF+L+YELLD
Sbjct: 57 NYIHVKVAGLFFVVTTMVNVSPSLLLELLQRIARVTKDYLGVLNEDSLRKNFILVYELLD 116
Query: 446 EILDFGYPQNSDTGVLKTFITSR-----ASSLPP 532
E++DFGYPQ + T VLK++I + A LPP
Sbjct: 117 EVIDFGYPQTTSTEVLKSYIFNEPIMVDAGRLPP 150
Score = 32.7 bits (71), Expect = 0.33
Identities = 11/34 (32%), Positives = 23/34 (67%)
Frame = +3
Query: 657 TASQVLSAHVAGKVVMKSYLSGMPECKFGINDKI 758
++ +L++ + G + MKSYL+G PE + +N+ +
Sbjct: 200 SSGYILTSEIDGTIQMKSYLTGNPEIRLALNEDL 233
>05_04_0141 -
18364065-18364176,18364722-18364948,18365183-18365390,
18365497-18365706,18366078-18366180,18366214-18366325,
18367061-18367204,18367835-18367936,18368081-18368186,
18368301-18368335
Length = 452
Score = 64.9 bits (151), Expect = 7e-11
Identities = 26/62 (41%), Positives = 44/62 (70%)
Frame = +2
Query: 320 NVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFGYPQNSDTGVLKT 499
+VN F+FL ++ DV+ Y G ++E+ IK+NFVL+Y++LDE++D G+P ++ +LK
Sbjct: 91 SVNMICDFQFLSRVADVLTDYLGDLNEDIIKDNFVLVYQILDEMMDNGFPLTTEPNILKE 150
Query: 500 FI 505
I
Sbjct: 151 MI 152
>03_06_0198 -
32299480-32299643,32300084-32300126,32300843-32300929,
32301063-32301098,32301187-32301295,32301408-32301499,
32302029-32302115,32303887-32304222
Length = 317
Score = 37.9 bits (84), Expect = 0.009
Identities = 22/79 (27%), Positives = 37/79 (46%)
Frame = +2
Query: 287 ANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFGY 466
A+++ N V E + ++V+ YFG + E ++ NF Y +LDEIL G
Sbjct: 174 ASLYFCMCIDAEDNELEVLEIIHHFVEVLDRYFGSVCELDLIFNFHKAYYILDEILIAGE 233
Query: 467 PQNSDTGVLKTFITSRASS 523
Q S + I ++ S+
Sbjct: 234 LQESSKKNVARLIAAQLST 252
>02_05_0128 - 26059348-26059437,26059553-26059759
Length = 98
Score = 31.9 bits (69), Expect = 0.58
Identities = 19/58 (32%), Positives = 29/58 (50%)
Frame = +3
Query: 84 KECEASPTMIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNL 257
KE E +GGL + E I DD+G++ V++FR V + VR+ + NL
Sbjct: 27 KELEWRKAQLGGLIRMITEEEDAIFDALHDDLGKHRVESFRDEVGVLAKSVRNTLQNL 84
>04_04_0190 -
23442824-23442846,23442891-23442949,23443613-23443737,
23443767-23443901,23444195-23444301,23444488-23444566,
23444856-23444942,23445045-23445281,23445783-23446128,
23446486-23446694
Length = 468
Score = 29.9 bits (64), Expect = 2.4
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -1
Query: 695 FPSHVSREHLTCGDINKLTYSSTSRNSSFRLYLMPS 588
+ HV E L CG+I K + ++ ++ YL+PS
Sbjct: 290 YTQHVINEALRCGNIVKFVHRKALKDVRYKEYLIPS 325
>10_06_0127 -
11027692-11027826,11027925-11027993,11029925-11030011,
11030146-11030286
Length = 143
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/56 (19%), Positives = 30/56 (53%)
Frame = +2
Query: 287 ANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEIL 454
A+++ + N + EF+ +++ M +FG + E +I + ++ +L+E++
Sbjct: 64 ASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMV 119
>01_07_0067 -
40857544-40858164,40858265-40858370,40858541-40858659,
40859195-40859392,40859659-40859724,40859798-40859916,
40860295-40860580
Length = 504
Score = 28.3 bits (60), Expect = 7.2
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Frame = +3
Query: 159 RVYRDDIGRNAVDAFRVNVI-HARQQVRSPVTN--LHAHLSSISSVQIFGWQQSQSKM*T 329
R YR +G+ VD +VI + Q + P+ H + ++SVQI+G ++ Q +
Sbjct: 90 RFYRKKVGKE-VDGIEDSVIFRSLQALAVPLIGNACHIFMHGLNSVQIYGAEKLQQALQE 148
Query: 330 RP 335
RP
Sbjct: 149 RP 150
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,599,894
Number of Sequences: 37544
Number of extensions: 464670
Number of successful extensions: 1006
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1005
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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