Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021282
         (770 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24749| Best HMM Match : Adap_comp_sub (HMM E-Value=2.24208e-44)    149   2e-36
SB_19443| Best HMM Match : Adap_comp_sub (HMM E-Value=2.2e-20)         84   1e-16
SB_32450| Best HMM Match : No HMM Matches (HMM E-Value=.)              55   7e-08
SB_36419| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_41497| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_26838| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_54885| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_31870| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_42756| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_19517| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  

>SB_24749| Best HMM Match : Adap_comp_sub (HMM E-Value=2.24208e-44)
          Length = 331

 Score =  149 bits (362), Expect = 2e-36
 Identities = 64/100 (64%), Positives = 82/100 (82%)
 Frame = +2

Query: 254 LARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIY 433
           +ARTSFFHI++ N+W+AAVT+QNVNAAMVFEFL + +D+M SYFGK++EE IKNNFVLIY
Sbjct: 50  IARTSFFHIRQGNVWIAAVTRQNVNAAMVFEFLFRTVDIMMSYFGKVTEEGIKNNFVLIY 109

Query: 434 ELLDEILDFGYPQNSDTGVLKTFITSRASSLPPRRNKPRL 553
           ELLDEI D+GYPQ +DT +LKTFIT +      R  + ++
Sbjct: 110 ELLDEIADYGYPQKTDTAILKTFITQQGVKTQTREEQAQI 149



 Score = 99.1 bits (236), Expect = 3e-21
 Identities = 44/50 (88%), Positives = 47/50 (94%)
 Frame = +3

Query: 108 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNL 257
           MIGG F+YNHKGEVLISRVYRDDIGRN VDAFRVNVIHAR Q+RSPVTN+
Sbjct: 1   MIGGFFIYNHKGEVLISRVYRDDIGRNTVDAFRVNVIHARGQIRSPVTNI 50



 Score = 96.7 bits (230), Expect = 2e-20
 Identities = 44/51 (86%), Positives = 49/51 (96%)
 Frame = +1

Query: 511 QGIKSASKEEQAQITSQVTGQIGWRREGIKYRRNELFLDVLEYVNLLMSPQ 663
           QG+K+ ++EEQAQITSQVTGQIGWRR+GIKYRRNELFLDVLE VNLLMSPQ
Sbjct: 136 QGVKTQTREEQAQITSQVTGQIGWRRDGIKYRRNELFLDVLESVNLLMSPQ 186



 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 28/34 (82%), Positives = 34/34 (100%)
 Frame = +3

Query: 666 QVLSAHVAGKVVMKSYLSGMPECKFGINDKIVME 767
           QVLSAHV+G+VVMKS+LSGMPECKFG+NDK+V+E
Sbjct: 188 QVLSAHVSGRVVMKSFLSGMPECKFGMNDKLVVE 221


>SB_19443| Best HMM Match : Adap_comp_sub (HMM E-Value=2.2e-20)
          Length = 216

 Score = 83.8 bits (198), Expect = 1e-16
 Identities = 34/76 (44%), Positives = 55/76 (72%)
 Frame = +2

Query: 299 LAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFGYPQNS 478
           +   TK+N N A++F FL +++ V   YF ++ EE+I++NFV+IYEL+DE++DFGYPQ +
Sbjct: 12  VVCTTKKNANVALIFVFLHRMVHVFIDYFKELEEESIRDNFVIIYELMDELVDFGYPQFT 71

Query: 479 DTGVLKTFITSRASSL 526
           +T +L+ +IT     L
Sbjct: 72  ETKILQEYITQEGHKL 87



 Score = 46.4 bits (105), Expect = 3e-05
 Identities = 18/32 (56%), Positives = 26/32 (81%)
 Frame = +1

Query: 562 VTGQIGWRREGIKYRRNELFLDVLEYVNLLMS 657
           +T  + WR + IKYR+NE+FLDV+E VNL++S
Sbjct: 97  LTNAVSWRGDNIKYRKNEVFLDVIESVNLMVS 128



 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 17/37 (45%), Positives = 26/37 (70%)
 Frame = +3

Query: 657 TASQVLSAHVAGKVVMKSYLSGMPECKFGINDKIVME 767
           ++  VL + + G V M+ YL+GMPE + G+NDKI+ E
Sbjct: 129 SSGNVLRSEINGTVKMRCYLTGMPELRLGLNDKILFE 165


>SB_32450| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 570

 Score = 54.8 bits (126), Expect = 7e-08
 Identities = 25/49 (51%), Positives = 34/49 (69%)
 Frame = +2

Query: 359 IIDVMQSYFGKISEENIKNNFVLIYELLDEILDFGYPQNSDTGVLKTFI 505
           + ++ + Y G I+EE IK N  LIYELLDE+LDFGY Q + T  LK ++
Sbjct: 18  VCNLCKDYCGIINEEAIKCNLPLIYELLDEVLDFGYVQATSTEALKAYV 66


>SB_36419| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 170

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +2

Query: 410 KNNFVLIYELLDEILDFGYPQNSDTGVLKTFI 505
           K   V I +LL+E+LD G+P  ++  VLK  I
Sbjct: 121 KKGAVYILQLLEEMLDNGFPLATEPNVLKELI 152


>SB_41497| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 792

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = -2

Query: 391 LAKIRLHHINDLQQEL-KYHGRVHILLCDCCQ 299
           +A+I+ + I D Q++  KY G  H+L+ DCC+
Sbjct: 732 IARIKRYAIQDRQKDRPKYTGFHHMLMYDCCR 763


>SB_26838| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 325

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = -2

Query: 391 LAKIRLHHINDLQQEL-KYHGRVHILLCDCCQ 299
           +A+I+ + I D Q++  KY G  H+L+ DCC+
Sbjct: 280 IARIKRYAIQDRQKDRPKYTGFHHMLMYDCCR 311


>SB_54885| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2988

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 653 CHRKSSALCSRGWESGHEVIS 715
           CHR +S  CS+GW++   V +
Sbjct: 130 CHRNTSMACSKGWQTYKRVFA 150


>SB_31870| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1378

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
 Frame = +2

Query: 293 IWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENI-KNNFVLIYELLDEILDFGYP 469
           +++  +T ++ N     E L     V+  Y   + E  I ++ F LI+   DEI+  GY 
Sbjct: 535 LYMLLITTKHSNILEDLETLRLFSRVIPEYCRAMEESEIGEHAFELIFAF-DEIVALGYR 593

Query: 470 QNSDTGVLKTF 502
           +N +   ++TF
Sbjct: 594 ENVNLAQIRTF 604


>SB_42756| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 497

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +2

Query: 434 ELLDEILDFGYPQNSDTGVLKTFITSRASSLPPRRNKP 547
           ELL++ LDF    +S T   K  IT   SS+P     P
Sbjct: 64  ELLNKALDFAADYDSITAEEKNIITHAKSSIPVHNQTP 101


>SB_19517| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1696

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = +2

Query: 425  LIYELLDEILDFGYPQNSDTGVLKTFITSRASSLPPRRNKP 547
            L++E+ D +L+ G+P+ + +  +K F+T       P + KP
Sbjct: 959  LLHEVHDYVLN-GFPRTTPSNNMKPFLTINRKKSTPSKTKP 998


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,042,582
Number of Sequences: 59808
Number of extensions: 543158
Number of successful extensions: 1596
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1596
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)