Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021282
(770 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF099001-8|AAP13778.1| 435|Caenorhabditis elegans Dumpy : short... 155 2e-38
AF099001-7|AAP13777.1| 441|Caenorhabditis elegans Dumpy : short... 155 2e-38
L26290-1|AAA27981.1| 441|Caenorhabditis elegans clathrin-associ... 153 1e-37
Z83115-4|CAB05557.3| 422|Caenorhabditis elegans Hypothetical pr... 95 4e-20
L26291-1|AAA72418.1| 422|Caenorhabditis elegans protein ( Caeno... 95 4e-20
AF003130-2|AAB54125.2| 426|Caenorhabditis elegans Adaptin, mu/m... 91 6e-19
U41023-4|AAA82343.2| 414|Caenorhabditis elegans Adaptin, mu/med... 61 1e-09
AF016440-4|AAB65902.1| 157|Caenorhabditis elegans Adaptin, smal... 40 0.001
U21309-2|AAN73882.1| 515|Caenorhabditis elegans Hypothetical pr... 35 0.074
U53340-2|AAA96207.1| 142|Caenorhabditis elegans Ap-2 small chai... 31 0.69
U80027-19|AAC48129.2| 313|Caenorhabditis elegans F-box a protei... 28 6.4
>AF099001-8|AAP13778.1| 435|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 23, isoform b protein.
Length = 435
Score = 155 bits (377), Expect = 2e-38
Identities = 68/87 (78%), Positives = 79/87 (90%)
Frame = +2
Query: 254 LARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIY 433
+ARTSFFH+KR N+W+ AVT+QNVNAAMVFEFL + D MQSYFGK++EEN+KNNFVLIY
Sbjct: 50 MARTSFFHVKRGNVWICAVTRQNVNAAMVFEFLKRFADTMQSYFGKLNEENVKNNFVLIY 109
Query: 434 ELLDEILDFGYPQNSDTGVLKTFITSR 514
ELLDEILDFGYPQN+D GVLKTFIT +
Sbjct: 110 ELLDEILDFGYPQNTDPGVLKTFITQQ 136
Score = 101 bits (243), Expect = 4e-22
Identities = 46/50 (92%), Positives = 49/50 (98%)
Frame = +3
Query: 108 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNL 257
MIGGLFVYNHKGEVLISR+YRDD+ RNAVDAFRVNVIHARQQVRSPVTN+
Sbjct: 1 MIGGLFVYNHKGEVLISRIYRDDVTRNAVDAFRVNVIHARQQVRSPVTNM 50
Score = 97.1 bits (231), Expect = 1e-20
Identities = 43/51 (84%), Positives = 50/51 (98%)
Frame = +1
Query: 511 QGIKSASKEEQAQITSQVTGQIGWRREGIKYRRNELFLDVLEYVNLLMSPQ 663
QG+++A+KEEQ+QITSQVTGQIGWRREGIKYRRNELFLDV+EYVNLLM+ Q
Sbjct: 136 QGVRTATKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVIEYVNLLMNQQ 186
Score = 68.9 bits (161), Expect = 4e-12
Identities = 31/34 (91%), Positives = 32/34 (94%)
Frame = +3
Query: 666 QVLSAHVAGKVVMKSYLSGMPECKFGINDKIVME 767
QVLSAHVAGKV MKSYLSGMPECKFGINDKI +E
Sbjct: 188 QVLSAHVAGKVAMKSYLSGMPECKFGINDKITIE 221
>AF099001-7|AAP13777.1| 441|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 23, isoform a protein.
Length = 441
Score = 155 bits (377), Expect = 2e-38
Identities = 68/87 (78%), Positives = 79/87 (90%)
Frame = +2
Query: 254 LARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIY 433
+ARTSFFH+KR N+W+ AVT+QNVNAAMVFEFL + D MQSYFGK++EEN+KNNFVLIY
Sbjct: 50 MARTSFFHVKRGNVWICAVTRQNVNAAMVFEFLKRFADTMQSYFGKLNEENVKNNFVLIY 109
Query: 434 ELLDEILDFGYPQNSDTGVLKTFITSR 514
ELLDEILDFGYPQN+D GVLKTFIT +
Sbjct: 110 ELLDEILDFGYPQNTDPGVLKTFITQQ 136
Score = 101 bits (243), Expect = 4e-22
Identities = 46/50 (92%), Positives = 49/50 (98%)
Frame = +3
Query: 108 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNL 257
MIGGLFVYNHKGEVLISR+YRDD+ RNAVDAFRVNVIHARQQVRSPVTN+
Sbjct: 1 MIGGLFVYNHKGEVLISRIYRDDVTRNAVDAFRVNVIHARQQVRSPVTNM 50
Score = 88.6 bits (210), Expect = 4e-18
Identities = 40/45 (88%), Positives = 44/45 (97%)
Frame = +1
Query: 529 SKEEQAQITSQVTGQIGWRREGIKYRRNELFLDVLEYVNLLMSPQ 663
+KEEQ+QITSQVTGQIGWRREGIKYRRNELFLDV+EYVNLLM+ Q
Sbjct: 148 TKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVIEYVNLLMNQQ 192
Score = 68.9 bits (161), Expect = 4e-12
Identities = 31/34 (91%), Positives = 32/34 (94%)
Frame = +3
Query: 666 QVLSAHVAGKVVMKSYLSGMPECKFGINDKIVME 767
QVLSAHVAGKV MKSYLSGMPECKFGINDKI +E
Sbjct: 194 QVLSAHVAGKVAMKSYLSGMPECKFGINDKITIE 227
>L26290-1|AAA27981.1| 441|Caenorhabditis elegans
clathrin-associated protein homologueprotein.
Length = 441
Score = 153 bits (371), Expect = 1e-37
Identities = 67/87 (77%), Positives = 78/87 (89%)
Frame = +2
Query: 254 LARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIY 433
+ARTSFFH+KR N+W+ AVT+QNVNAAMVF FL + D MQSYFGK++EEN+KNNFVLIY
Sbjct: 50 MARTSFFHVKRGNVWICAVTRQNVNAAMVFAFLKRFADTMQSYFGKLNEENVKNNFVLIY 109
Query: 434 ELLDEILDFGYPQNSDTGVLKTFITSR 514
ELLDEILDFGYPQN+D GVLKTFIT +
Sbjct: 110 ELLDEILDFGYPQNTDPGVLKTFITQQ 136
Score = 101 bits (243), Expect = 4e-22
Identities = 46/50 (92%), Positives = 49/50 (98%)
Frame = +3
Query: 108 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNL 257
MIGGLFVYNHKGEVLISR+YRDD+ RNAVDAFRVNVIHARQQVRSPVTN+
Sbjct: 1 MIGGLFVYNHKGEVLISRIYRDDVTRNAVDAFRVNVIHARQQVRSPVTNM 50
Score = 88.6 bits (210), Expect = 4e-18
Identities = 40/45 (88%), Positives = 44/45 (97%)
Frame = +1
Query: 529 SKEEQAQITSQVTGQIGWRREGIKYRRNELFLDVLEYVNLLMSPQ 663
+KEEQ+QITSQVTGQIGWRREGIKYRRNELFLDV+EYVNLLM+ Q
Sbjct: 148 TKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVIEYVNLLMNQQ 192
Score = 68.9 bits (161), Expect = 4e-12
Identities = 31/34 (91%), Positives = 32/34 (94%)
Frame = +3
Query: 666 QVLSAHVAGKVVMKSYLSGMPECKFGINDKIVME 767
QVLSAHVAGKV MKSYLSGMPECKFGINDKI +E
Sbjct: 194 QVLSAHVAGKVAMKSYLSGMPECKFGINDKITIE 227
>Z83115-4|CAB05557.3| 422|Caenorhabditis elegans Hypothetical
protein K11D2.3a protein.
Length = 422
Score = 95.5 bits (227), Expect = 4e-20
Identities = 41/99 (41%), Positives = 64/99 (64%)
Frame = +2
Query: 230 AGAITCYQLARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENI 409
A + YQ T+F IK NI+L + + NVN M+ FL K ++V YF + EE++
Sbjct: 46 AAPVLTYQ--DTNFVFIKHTNIYLVSACRSNVNVTMILSFLYKCVEVFSEYFKDVEEESV 103
Query: 410 KNNFVLIYELLDEILDFGYPQNSDTGVLKTFITSRASSL 526
++NFV+IYELLDE++DFG+PQ +++ +L+ +IT L
Sbjct: 104 RDNFVVIYELLDEMMDFGFPQTTESRILQEYITQEGQKL 142
Score = 50.8 bits (116), Expect = 1e-06
Identities = 21/32 (65%), Positives = 26/32 (81%)
Frame = +1
Query: 562 VTGQIGWRREGIKYRRNELFLDVLEYVNLLMS 657
VT + WR EGIKYR+NE+FLDV+E VN+L S
Sbjct: 152 VTNAVSWRSEGIKYRKNEVFLDVIESVNMLAS 183
Score = 42.3 bits (95), Expect = 4e-04
Identities = 16/33 (48%), Positives = 24/33 (72%)
Frame = +3
Query: 669 VLSAHVAGKVVMKSYLSGMPECKFGINDKIVME 767
VL + + G V M+ YL+GMPE + G+NDK++ E
Sbjct: 188 VLQSEIVGSVKMRVYLTGMPELRLGLNDKVLFE 220
Score = 31.9 bits (69), Expect = 0.52
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +3
Query: 120 LFVYNHKGEVLISRVYRDDIGRNAVDAF 203
+F+ + KG+ +ISR YR DI A+D F
Sbjct: 6 MFILDLKGKTIISRNYRGDIDMTAIDKF 33
>L26291-1|AAA72418.1| 422|Caenorhabditis elegans protein (
Caenorhabditis elegans(unc-101) mRNA, complete cds. ).
Length = 422
Score = 95.5 bits (227), Expect = 4e-20
Identities = 41/99 (41%), Positives = 64/99 (64%)
Frame = +2
Query: 230 AGAITCYQLARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENI 409
A + YQ T+F IK NI+L + + NVN M+ FL K ++V YF + EE++
Sbjct: 46 AAPVLTYQ--DTNFVFIKHTNIYLVSACRSNVNVTMILSFLYKCVEVFSEYFKDVEEESV 103
Query: 410 KNNFVLIYELLDEILDFGYPQNSDTGVLKTFITSRASSL 526
++NFV+IYELLDE++DFG+PQ +++ +L+ +IT L
Sbjct: 104 RDNFVVIYELLDEMMDFGFPQTTESRILQEYITQEGQKL 142
Score = 50.8 bits (116), Expect = 1e-06
Identities = 21/32 (65%), Positives = 26/32 (81%)
Frame = +1
Query: 562 VTGQIGWRREGIKYRRNELFLDVLEYVNLLMS 657
VT + WR EGIKYR+NE+FLDV+E VN+L S
Sbjct: 152 VTNAVSWRSEGIKYRKNEVFLDVIESVNMLAS 183
Score = 42.3 bits (95), Expect = 4e-04
Identities = 16/33 (48%), Positives = 24/33 (72%)
Frame = +3
Query: 669 VLSAHVAGKVVMKSYLSGMPECKFGINDKIVME 767
VL + + G V M+ YL+GMPE + G+NDK++ E
Sbjct: 188 VLQSEIVGSVKMRVYLTGMPELRLGLNDKVLFE 220
Score = 31.9 bits (69), Expect = 0.52
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +3
Query: 120 LFVYNHKGEVLISRVYRDDIGRNAVDAF 203
+F+ + KG+ +ISR YR DI A+D F
Sbjct: 6 MFILDLKGKTIISRNYRGDIDMTAIDKF 33
>AF003130-2|AAB54125.2| 426|Caenorhabditis elegans Adaptin,
mu/medium chain (clathrinassociated complex) protein 1
protein.
Length = 426
Score = 91.5 bits (217), Expect = 6e-19
Identities = 38/87 (43%), Positives = 61/87 (70%)
Frame = +2
Query: 266 SFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLD 445
S+ +IK N++L ++K+N N +V L KI++V YF + EE +++NFV+IYEL D
Sbjct: 56 SYTYIKYMNVYLVTISKKNTNVILVLSALYKIVEVFCEYFKTLEEEAVRDNFVIIYELFD 115
Query: 446 EILDFGYPQNSDTGVLKTFITSRASSL 526
E+LDFGYPQ +++ +L+ FIT + + L
Sbjct: 116 EMLDFGYPQTTESKILQEFITQQGNRL 142
Score = 51.2 bits (117), Expect = 8e-07
Identities = 21/34 (61%), Positives = 27/34 (79%)
Frame = +1
Query: 562 VTGQIGWRREGIKYRRNELFLDVLEYVNLLMSPQ 663
VT + WR EGIKYR+NE+FLDV+E VN+L + Q
Sbjct: 151 VTNAVSWRSEGIKYRKNEVFLDVIESVNMLANAQ 184
Score = 35.1 bits (77), Expect = 0.056
Identities = 16/54 (29%), Positives = 29/54 (53%)
Frame = +3
Query: 111 IGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNLHAHLS 272
I GLF+ + KG V+ISR YR D+ + ++ F ++ + + +H +S
Sbjct: 3 ISGLFILDLKGNVVISRNYRGDVDMSCIEKFMPLLVEKEDEGSASPVLVHQGIS 56
Score = 35.1 bits (77), Expect = 0.056
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +3
Query: 669 VLSAHVAGKVVMKSYLSGMPECKFGINDKIVME 767
VL + + G + + LSGMPE + G+NDK+ +
Sbjct: 187 VLRSEIVGSIRFRVVLSGMPELRLGLNDKVFFQ 219
>U41023-4|AAA82343.2| 414|Caenorhabditis elegans Adaptin, mu/medium
chain (clathrinassociated complex) protein 3 protein.
Length = 414
Score = 60.9 bits (141), Expect = 1e-09
Identities = 27/77 (35%), Positives = 47/77 (61%)
Frame = +2
Query: 275 HIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEIL 454
++ + N++L AV MV EFL ++I YF + S+ ++K N V+++ELLDE+L
Sbjct: 58 NVYQNNLFLVAVITVETPPLMVIEFLHRVIQTFTQYFDEFSDSSMKENCVMVFELLDEML 117
Query: 455 DFGYPQNSDTGVLKTFI 505
D G+P ++ +L+ I
Sbjct: 118 DNGFPLVTEMNILQDLI 134
Score = 38.7 bits (86), Expect = 0.005
Identities = 15/36 (41%), Positives = 25/36 (69%), Gaps = 3/36 (8%)
Frame = +1
Query: 565 TGQIG---WRREGIKYRRNELFLDVLEYVNLLMSPQ 663
TGQ+ WRR+G+KY NE + DV+E +++++ Q
Sbjct: 159 TGQLSNIPWRRQGVKYTNNEAYFDVIEEIDVIVDKQ 194
>AF016440-4|AAB65902.1| 157|Caenorhabditis elegans Adaptin, small
chain (clathrinassociated complex) protein 1 protein.
Length = 157
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Frame = +2
Query: 287 ANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFG- 463
A+++ +QN N + E + + ++++ YFG + E +I NF Y +LDE L G
Sbjct: 63 ASLYFCCAIEQNDNELITLEVIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLAGE 122
Query: 464 YPQNSDTGVLK 496
+ S VLK
Sbjct: 123 IQETSKKQVLK 133
>U21309-2|AAN73882.1| 515|Caenorhabditis elegans Hypothetical
protein C13B9.3 protein.
Length = 515
Score = 34.7 bits (76), Expect = 0.074
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Frame = +2
Query: 290 NIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENI-KNNFVLIYELLDEILDFGY 466
NI+L VT +N N E L + V+ Y E+ I ++F LI+ DE++ GY
Sbjct: 69 NIYLVLVTTKNSNILEDLETLRLFVRVIPEYCRSNEEKEILAHDFDLIF-AFDEVVTLGY 127
Query: 467 PQNSDTGVLKTF 502
++ + ++TF
Sbjct: 128 RESVNLAQIRTF 139
>U53340-2|AAA96207.1| 142|Caenorhabditis elegans Ap-2 small chain
(clathrin associatedcomplex) protein 2 protein.
Length = 142
Score = 31.5 bits (68), Expect = 0.69
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +2
Query: 326 NAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFG-YPQNSDTGVLKTF 502
N E + ++V+ YF + E ++ NF +Y ++DE+ G + S T VLK
Sbjct: 76 NNLYYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQL 135
Query: 503 I 505
+
Sbjct: 136 L 136
>U80027-19|AAC48129.2| 313|Caenorhabditis elegans F-box a protein
protein 64 protein.
Length = 313
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +3
Query: 93 EASPTMIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIH 221
+++P I +F ++ G S Y DDI + A+D FRV H
Sbjct: 264 QSNPVDIAKVFKPDYVGGNEYSFEYSDDIHKFAIDCFRVGESH 306
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,454,983
Number of Sequences: 27780
Number of extensions: 399973
Number of successful extensions: 1163
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1094
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1163
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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