Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021282
         (770 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    25   0.78 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   1.4  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    24   1.8  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   3.1  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   3.1  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   3.1  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   3.1  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   4.2  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   4.2  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   4.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   4.2  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   5.5  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         22   7.3  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   9.6  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   9.6  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   9.6  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   9.6  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   9.6  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 25.0 bits (52), Expect = 0.78
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 295 NICTLDMEERCACKLVTGDRTCWRAW 218
           ++C+L  E   A K V G++ CW  +
Sbjct: 585 SVCSLPCEVGQAKKYVAGEQCCWHCF 610


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -2

Query: 316 LCDCCQPNICTLDMEERCACKLVTGDRT 233
           LC CC  + C  +M     CK    DRT
Sbjct: 746 LCHCCDFDACDCEMTCPAGCKCY-NDRT 772


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +3

Query: 126 VYNHKGEVLISRV--YRDDIGRNAVDAFRVNVIHARQQVRSPV 248
           V N+ G V    +  Y D+  R A+D F+  + +  ++ RSPV
Sbjct: 297 VNNYMGPVATKAMKGYSDEDLREAIDEFKTPMRNDSERNRSPV 339


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = -2

Query: 334 GRVHILLCDCCQPNICTLDMEERCACKL 251
           G   I+ C  C PN CT      C  +L
Sbjct: 420 GPNEIVTCTNCGPNPCTHTTTNGCTAEL 447


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = -2

Query: 334 GRVHILLCDCCQPNICTLDMEERCACKL 251
           G   I+ C  C PN CT      C  +L
Sbjct: 406 GPNEIVTCTNCGPNPCTHTTTNGCTAEL 433


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = -2

Query: 334 GRVHILLCDCCQPNICTLDMEERCACKL 251
           G   I+ C  C PN CT      C  +L
Sbjct: 440 GPNEIVTCTNCGPNPCTHTTTNGCTAEL 467


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = -2

Query: 334 GRVHILLCDCCQPNICTLDMEERCACKL 251
           G   I+ C  C PN CT      C  +L
Sbjct: 389 GPNEIVTCTNCGPNPCTHTTTNGCTAEL 416


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 10/49 (20%), Positives = 21/49 (42%)
 Frame = +1

Query: 511 QGIKSASKEEQAQITSQVTGQIGWRREGIKYRRNELFLDVLEYVNLLMS 657
           QGI     E  ++++   T +  WR           F+ +  Y+ +L++
Sbjct: 378 QGILGEDVENNSEVSKSRTKESAWRHFAAIIEWLSFFIVIFTYIIILIT 426


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 769 ASITILSLIPNLHSGIPDRY 710
           +S+ +  L+ N H   PDRY
Sbjct: 338 SSVVLTVLVLNFHHRTPDRY 357


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 769 ASITILSLIPNLHSGIPDRY 710
           +S+ +  L+ N H   PDRY
Sbjct: 338 SSVVLTVLVLNFHHRTPDRY 357


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -1

Query: 173 ISVDSRDQHLAFMVINEQAPDHCG 102
           + V + DQ+ + ++I   +PDH G
Sbjct: 658 VHVTNMDQYNSILMIEHLSPDHNG 681


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -2

Query: 640 HTLVHQGTARFVCT*CLHGASQSDQLLV 557
           H  +H G     CT C     QS QL++
Sbjct: 166 HMRIHTGERPHKCTVCSKTFIQSGQLVI 193



 Score = 22.2 bits (45), Expect = 5.5
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -2

Query: 640 HTLVHQGTARFVCT*CLHGASQSDQLLV 557
           H   H G   +VC  C  G + S QL V
Sbjct: 194 HMRTHTGEKPYVCKACGKGFTCSKQLKV 221


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +1

Query: 661 QVKCSLLTWLGKW 699
           +V C +L+W  KW
Sbjct: 61  RVTCDVLSWQSKW 73


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 8/35 (22%), Positives = 19/35 (54%)
 Frame = +1

Query: 595 IKYRRNELFLDVLEYVNLLMSPQVKCSLLTWLGKW 699
           ++   + + +D +++  L M P+ K    +WL K+
Sbjct: 374 VRQPEDTMSVDRMQHCELHMQPRKKNCCRSWLSKF 408


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 8/35 (22%), Positives = 19/35 (54%)
 Frame = +1

Query: 595 IKYRRNELFLDVLEYVNLLMSPQVKCSLLTWLGKW 699
           ++   + + +D +++  L M P+ K    +WL K+
Sbjct: 374 VRQPEDTMSVDRMQHCELHMQPRKKNCCRSWLSKF 408


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -3

Query: 405 FSSEILPKYDC 373
           +S ++ PKYDC
Sbjct: 407 YSRDVRPKYDC 417


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -3

Query: 405 FSSEILPKYDC 373
           +S ++ PKYDC
Sbjct: 407 YSRDVRPKYDC 417


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -3

Query: 405 FSSEILPKYDC 373
           +S ++ PKYDC
Sbjct: 407 YSRDVRPKYDC 417


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,929
Number of Sequences: 438
Number of extensions: 4558
Number of successful extensions: 22
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)