Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021282
(770 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g24550.2 68417.m03519 clathrin adaptor complexes medium subun... 91 7e-19
At4g24550.1 68417.m03518 clathrin adaptor complexes medium subun... 91 7e-19
At5g46630.2 68418.m05740 clathrin adaptor complexes medium subun... 91 1e-18
At5g46630.1 68418.m05741 clathrin adaptor complexes medium subun... 91 1e-18
At1g60780.1 68414.m06842 clathrin adaptor complexes medium subun... 89 4e-18
At1g10730.1 68414.m01223 clathrin adaptor complexes medium subun... 89 4e-18
At1g56590.1 68414.m06508 clathrin adaptor complexes medium subun... 70 2e-12
At4g35410.2 68417.m05030 clathrin adaptor complex small chain fa... 39 0.004
At2g17380.1 68415.m02007 clathrin assembly protein AP19 identica... 37 0.017
At5g23700.1 68418.m02778 hypothetical protein 30 1.5
At4g20060.1 68417.m02935 expressed protein ; expression support... 29 2.6
At4g27740.1 68417.m03986 yippee family protein similar to qdgl-1... 29 4.5
At4g02220.1 68417.m00300 zinc finger (MYND type) family protein ... 28 5.9
At3g11450.1 68416.m01396 DNAJ heat shock N-terminal domain-conta... 28 7.9
>At4g24550.2 68417.m03519 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 451
Score = 91.1 bits (216), Expect = 7e-19
Identities = 40/106 (37%), Positives = 68/106 (64%)
Frame = +2
Query: 230 AGAITCYQLARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENI 409
A A + + ++FH+K ++ A T+ NV+ ++V E L +I V++ Y G ++E++
Sbjct: 46 AEAPPIFNVDGVNYFHVKVVGLYFVATTRVNVSPSLVLELLQRIARVIKDYLGVLNEDSF 105
Query: 410 KNNFVLIYELLDEILDFGYPQNSDTGVLKTFITSRASSLPPRRNKP 547
+ NFVL+YELLDE++DFGY Q + T VLK++I + + P R +P
Sbjct: 106 RKNFVLVYELLDEVIDFGYVQTTSTEVLKSYIFNEPIVVSPARLQP 151
Score = 33.9 bits (74), Expect = 0.12
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = +3
Query: 657 TASQVLSAHVAGKVVMKSYLSGMPECKFGINDKI 758
++ +L++ + G + MKSYLSG PE + +N+ +
Sbjct: 201 SSGYILTSEIDGTIQMKSYLSGNPEIRLALNEDL 234
>At4g24550.1 68417.m03518 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 380
Score = 91.1 bits (216), Expect = 7e-19
Identities = 40/106 (37%), Positives = 68/106 (64%)
Frame = +2
Query: 230 AGAITCYQLARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENI 409
A A + + ++FH+K ++ A T+ NV+ ++V E L +I V++ Y G ++E++
Sbjct: 46 AEAPPIFNVDGVNYFHVKVVGLYFVATTRVNVSPSLVLELLQRIARVIKDYLGVLNEDSF 105
Query: 410 KNNFVLIYELLDEILDFGYPQNSDTGVLKTFITSRASSLPPRRNKP 547
+ NFVL+YELLDE++DFGY Q + T VLK++I + + P R +P
Sbjct: 106 RKNFVLVYELLDEVIDFGYVQTTSTEVLKSYIFNEPIVVSPARLQP 151
Score = 33.9 bits (74), Expect = 0.12
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = +3
Query: 657 TASQVLSAHVAGKVVMKSYLSGMPECKFGINDKI 758
++ +L++ + G + MKSYLSG PE + +N+ +
Sbjct: 201 SSGYILTSEIDGTIQMKSYLSGNPEIRLALNEDL 234
>At5g46630.2 68418.m05740 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 441
Score = 90.6 bits (215), Expect = 1e-18
Identities = 43/101 (42%), Positives = 65/101 (64%), Gaps = 1/101 (0%)
Frame = +2
Query: 251 QLARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFG-KISEENIKNNFVL 427
Q+ SF +++ +N+++ V N N A F+F+++ + + +SYFG E+ I+NNFVL
Sbjct: 52 QIGGCSFVYMRISNVYIVIVVSSNANVACGFKFVVEAVALFKSYFGGAFDEDAIRNNFVL 111
Query: 428 IYELLDEILDFGYPQNSDTGVLKTFITSRASSLPPRRNKPR 550
IYELLDEI+DFGYPQN +LK +IT P +KP+
Sbjct: 112 IYELLDEIMDFGYPQNLSPEILKLYITQEGVR-SPFSSKPK 151
Score = 59.3 bits (137), Expect = 3e-09
Identities = 24/35 (68%), Positives = 31/35 (88%)
Frame = +1
Query: 553 TSQVTGQIGWRREGIKYRRNELFLDVLEYVNLLMS 657
T QVTG +GWRREG+ Y++NE+FLD++E VNLLMS
Sbjct: 159 TLQVTGAVGWRREGLAYKKNEVFLDIVESVNLLMS 193
Score = 50.4 bits (115), Expect = 1e-06
Identities = 20/52 (38%), Positives = 32/52 (61%)
Frame = +3
Query: 102 PTMIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNL 257
P ++ N +G+VLI+R YRDD+G N VDAFR +++ ++ PV +
Sbjct: 2 PVAASAIYFLNLRGDVLINRTYRDDVGGNMVDAFRTHIMQTKELGNCPVRQI 53
Score = 45.6 bits (103), Expect = 4e-05
Identities = 20/33 (60%), Positives = 25/33 (75%)
Frame = +3
Query: 669 VLSAHVAGKVVMKSYLSGMPECKFGINDKIVME 767
VL V GKV+MK +LSGMP+ K G+NDKI +E
Sbjct: 198 VLRCDVTGKVLMKCFLSGMPDLKLGLNDKIGLE 230
>At5g46630.1 68418.m05741 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 438
Score = 90.6 bits (215), Expect = 1e-18
Identities = 43/101 (42%), Positives = 65/101 (64%), Gaps = 1/101 (0%)
Frame = +2
Query: 251 QLARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFG-KISEENIKNNFVL 427
Q+ SF +++ +N+++ V N N A F+F+++ + + +SYFG E+ I+NNFVL
Sbjct: 52 QIGGCSFVYMRISNVYIVIVVSSNANVACGFKFVVEAVALFKSYFGGAFDEDAIRNNFVL 111
Query: 428 IYELLDEILDFGYPQNSDTGVLKTFITSRASSLPPRRNKPR 550
IYELLDEI+DFGYPQN +LK +IT P +KP+
Sbjct: 112 IYELLDEIMDFGYPQNLSPEILKLYITQEGVR-SPFSSKPK 151
Score = 59.3 bits (137), Expect = 3e-09
Identities = 24/35 (68%), Positives = 31/35 (88%)
Frame = +1
Query: 553 TSQVTGQIGWRREGIKYRRNELFLDVLEYVNLLMS 657
T QVTG +GWRREG+ Y++NE+FLD++E VNLLMS
Sbjct: 159 TLQVTGAVGWRREGLAYKKNEVFLDIVESVNLLMS 193
Score = 50.4 bits (115), Expect = 1e-06
Identities = 20/52 (38%), Positives = 32/52 (61%)
Frame = +3
Query: 102 PTMIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNL 257
P ++ N +G+VLI+R YRDD+G N VDAFR +++ ++ PV +
Sbjct: 2 PVAASAIYFLNLRGDVLINRTYRDDVGGNMVDAFRTHIMQTKELGNCPVRQI 53
Score = 45.6 bits (103), Expect = 4e-05
Identities = 20/33 (60%), Positives = 25/33 (75%)
Frame = +3
Query: 669 VLSAHVAGKVVMKSYLSGMPECKFGINDKIVME 767
VL V GKV+MK +LSGMP+ K G+NDKI +E
Sbjct: 198 VLRCDVTGKVLMKCFLSGMPDLKLGLNDKIGLE 230
>At1g60780.1 68414.m06842 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 428
Score = 88.6 bits (210), Expect = 4e-18
Identities = 35/94 (37%), Positives = 65/94 (69%)
Frame = +2
Query: 266 SFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLD 445
++ ++ +N++L ++QN NAA + FL +++DV + YF ++ EE++++NFV++YELLD
Sbjct: 59 TYMFVQHSNVYLMIASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLD 118
Query: 446 EILDFGYPQNSDTGVLKTFITSRASSLPPRRNKP 547
E++DFGYPQ ++ +L FI + A + + P
Sbjct: 119 EMMDFGYPQYTEARILSEFIKTDAYRMEVTQRPP 152
Score = 48.4 bits (110), Expect = 5e-06
Identities = 17/35 (48%), Positives = 29/35 (82%)
Frame = +3
Query: 666 QVLSAHVAGKVVMKSYLSGMPECKFGINDKIVMEA 770
Q++ + V G + M++YL+GMPECK G+ND++++EA
Sbjct: 190 QIVRSDVVGALKMRTYLTGMPECKLGLNDRVLLEA 224
Score = 47.6 bits (108), Expect = 9e-06
Identities = 18/32 (56%), Positives = 27/32 (84%)
Frame = +1
Query: 562 VTGQIGWRREGIKYRRNELFLDVLEYVNLLMS 657
VT + WR EGI+Y++NE+FLDV+E VN+L++
Sbjct: 155 VTNAVSWRSEGIQYKKNEVFLDVIENVNILVN 186
>At1g10730.1 68414.m01223 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 428
Score = 88.6 bits (210), Expect = 4e-18
Identities = 36/94 (38%), Positives = 65/94 (69%)
Frame = +2
Query: 266 SFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLD 445
++ ++ +NI+L ++QN NAA + FL +++DV + YF ++ EE++++NFV++YELLD
Sbjct: 59 TYMFVQHSNIYLMIASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLD 118
Query: 446 EILDFGYPQNSDTGVLKTFITSRASSLPPRRNKP 547
E++DFGYPQ ++ +L FI + A + + P
Sbjct: 119 EMMDFGYPQFTEARILSEFIKTDAYRMEVTQRPP 152
Score = 50.0 bits (114), Expect = 2e-06
Identities = 19/35 (54%), Positives = 29/35 (82%)
Frame = +3
Query: 666 QVLSAHVAGKVVMKSYLSGMPECKFGINDKIVMEA 770
Q++ + V G + M++YLSGMPECK G+ND+I++EA
Sbjct: 190 QIVRSDVVGALKMRTYLSGMPECKLGLNDRILLEA 224
Score = 47.2 bits (107), Expect = 1e-05
Identities = 17/32 (53%), Positives = 27/32 (84%)
Frame = +1
Query: 562 VTGQIGWRREGIKYRRNELFLDVLEYVNLLMS 657
VT + WR EG+K+++NE+FLDV+E VN+L++
Sbjct: 155 VTNSVSWRSEGLKFKKNEVFLDVIESVNILVN 186
>At1g56590.1 68414.m06508 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 415
Score = 69.7 bits (163), Expect = 2e-12
Identities = 30/78 (38%), Positives = 49/78 (62%)
Frame = +2
Query: 272 FHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEI 451
F I R I A ++ + M EFL ++ DV+ Y G ++E+ IK+NF+++YELLDE+
Sbjct: 58 FQIVRDGITFLACSQVEMPPLMAIEFLCRVADVLSEYLGGLNEDLIKDNFIIVYELLDEM 117
Query: 452 LDFGYPQNSDTGVLKTFI 505
+D G+P ++ +LK I
Sbjct: 118 IDNGFPLTTEPSILKEMI 135
>At4g35410.2 68417.m05030 clathrin adaptor complex small chain
family protein contains Pfam profile: PF01217 clathrin
adaptor complex small chain
Length = 162
Score = 38.7 bits (86), Expect = 0.004
Identities = 20/76 (26%), Positives = 37/76 (48%)
Frame = +2
Query: 287 ANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFGY 466
A+++ Q N V E + ++++ YFG + E ++ NF Y +LDE+L G
Sbjct: 63 ASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGE 122
Query: 467 PQNSDTGVLKTFITSR 514
Q S + I+++
Sbjct: 123 LQESSKKTVARIISAQ 138
>At2g17380.1 68415.m02007 clathrin assembly protein AP19 identical
to clathrin assembly protein AP19 GI:2231698 from
[Arabidopsis thaliana]
Length = 161
Score = 36.7 bits (81), Expect = 0.017
Identities = 19/76 (25%), Positives = 37/76 (48%)
Frame = +2
Query: 287 ANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFGY 466
A+++ + N V E + ++++ YFG + E ++ NF Y +LDE+L G
Sbjct: 63 ASLYFCMCIDEADNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGE 122
Query: 467 PQNSDTGVLKTFITSR 514
Q S + I+++
Sbjct: 123 LQESSKKTVARIISAQ 138
>At5g23700.1 68418.m02778 hypothetical protein
Length = 572
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = -2
Query: 208 TLNASTALRPISSR*TLEINTSPLWL*TN---KPPIIVGEASHSFK 80
++ +S+ RP + + N SPLW+ KPP+I+ HSFK
Sbjct: 118 SVRSSSTGRPSTFSRSSTPNASPLWMPPKASLKPPVIIPPIDHSFK 163
>At4g20060.1 68417.m02935 expressed protein ; expression supported by
MPSS
Length = 1134
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Frame = -2
Query: 457 VQDLIKQL--IDQNKVI-LDVLFRNLAKIRLHHINDLQQELKYHGRVHILLCDCCQPNIC 287
V+DL+++L +D N L++L + H+ Q L+ G+V +LL C C
Sbjct: 844 VEDLVRRLWKVDPNVCEKLNILVNTNESLNCFHLQSRNQVLRVCGKVKMLLSICRDALSC 903
Query: 286 TLDMEER 266
T ++ +
Sbjct: 904 TYGLQNQ 910
>At4g27740.1 68417.m03986 yippee family protein similar to qdgl-1
[Coturnix coturnix] GI:10441650, Yippee protein [Homo
sapiens] GI:5713281; contains Pfam profile PF03226:
Yippee putative zinc-binding protein
Length = 148
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/66 (24%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Frame = +3
Query: 132 NHKG--EVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNLH--AHLSSISSVQIFG 299
NH G + +IS+ ++ GR + + +N++ ++ R+ +T LH A +S + + G
Sbjct: 59 NHVGLHDDIISKAFQGRTGRAFLFSHAMNIVVGPKEDRNLLTGLHTVADISCVDCNEPLG 118
Query: 300 WQQSQS 317
W+ ++
Sbjct: 119 WKYERA 124
>At4g02220.1 68417.m00300 zinc finger (MYND type) family protein /
programmed cell death 2 C-terminal domain-containing
protein similar to SP|Q16342 Programmed cell death
protein 2 (Zinc finger protein Rp-8) {Homo sapiens};
contains Pfam profiles PF01753: MYND finger, PF04194:
Programmed cell death protein 2, C-terminal putative
domain
Length = 418
Score = 28.3 bits (60), Expect = 5.9
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 676 LLTWLGKWS*SHICPGCQSA 735
L TW G W +C GC++A
Sbjct: 187 LCTWCGTWKGDKLCSGCKNA 206
>At3g11450.1 68416.m01396 DNAJ heat shock N-terminal
domain-containing protein / cell division
protein-related similar to GlsA [Volvox carteri f.
nagariensis] GI:4633129; contains Pfam profiles PF00226
DnaJ domain, PF00249 Myb-like DNA-binding domain
Length = 663
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = -1
Query: 656 DINKLTYSSTSRNSSFRLYLMPSRR 582
D N+ YS R SS++L++MPSRR
Sbjct: 6 DRNQGGYSLGVRCSSYKLFIMPSRR 30
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,386,619
Number of Sequences: 28952
Number of extensions: 371592
Number of successful extensions: 1007
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1005
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1716774400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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