Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021281
         (586 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   104   4e-23
U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf famil...    29   3.2  
AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical...    29   3.2  
Z19154-9|CAA79552.2|  559|Caenorhabditis elegans Hypothetical pr...    28   4.2  
AL132949-31|CAB61110.3|  297|Caenorhabditis elegans Hypothetical...    27   9.8  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  104 bits (250), Expect = 4e-23
 Identities = 44/51 (86%), Positives = 47/51 (92%)
 Frame = +2

Query: 248 NQSESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 400
           + +ESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG MFAP K +RRWH
Sbjct: 61  HSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWH 111



 Score = 58.8 bits (136), Expect = 3e-09
 Identities = 30/61 (49%), Positives = 40/61 (65%)
 Frame = +3

Query: 72  ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQT 251
           ARPLV+VY EK E  Q   + LP VF+ PIRPDLV+ +   + +N RQ + V+ +AG Q 
Sbjct: 3   ARPLVTVYDEKYEATQSQIR-LPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQH 61

Query: 252 S 254
           S
Sbjct: 62  S 62



 Score = 37.5 bits (83), Expect = 0.007
 Identities = 13/28 (46%), Positives = 23/28 (82%)
 Frame = +1

Query: 433 LGGSVAATGVPALVQARGHIIEKIPGFP 516
           +  ++AA+G+PAL+QARGH+I+++   P
Sbjct: 123 VSSAIAASGIPALLQARGHVIDQVAEVP 150



 Score = 36.3 bits (80), Expect = 0.016
 Identities = 15/26 (57%), Positives = 20/26 (76%)
 Frame = +3

Query: 504 SRLPLVVADKFQEINKTKHAVIFLRR 581
           + +PLVV+DK +   KTK AV+FLRR
Sbjct: 147 AEVPLVVSDKVESFRKTKEAVVFLRR 172


>U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical
           protein F53A9.9 protein.
          Length = 147

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 359 HHDTCYRRHPDRTYEYHHHGHAEFGRQH 276
           HHD  +++H  + ++ HHHGH   G  H
Sbjct: 120 HHDGHHKKHGRKEHD-HHHGH-HHGHHH 145


>AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf family
            ATPase protein.
          Length = 2395

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
 Frame = +2

Query: 233  GGWSPNQSESWGTGRAVARIPRV-----RGGGTHRSGQGAFGNMCRGGRMFAP 376
            G   P+Q +     + +  IP+V      GGG  R G G+   M RGGR+  P
Sbjct: 2128 GSQQPHQQQQQQPQQRIQYIPQVTGSGNNGGGGGRGGYGSTLVMPRGGRVVRP 2180


>AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical
            protein Y111B2A.22 protein.
          Length = 2395

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
 Frame = +2

Query: 233  GGWSPNQSESWGTGRAVARIPRV-----RGGGTHRSGQGAFGNMCRGGRMFAP 376
            G   P+Q +     + +  IP+V      GGG  R G G+   M RGGR+  P
Sbjct: 2128 GSQQPHQQQQQQPQQRIQYIPQVTGSGNNGGGGGRGGYGSTLVMPRGGRVVRP 2180


>Z19154-9|CAA79552.2|  559|Caenorhabditis elegans Hypothetical
           protein C40H1.1 protein.
          Length = 559

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -3

Query: 356 HDTCYRRHPDRTYEYHHHGHAEFGRQHVQ-YPMIQTGLVTSLLAH 225
           H +C + + +  ++  H G  E  +   Q YPM++TG  T LL H
Sbjct: 471 HASCLQYYCEGCWDRMHIGKNEDNKLEDQHYPMVRTGDQTRLLKH 515


>AL132949-31|CAB61110.3|  297|Caenorhabditis elegans Hypothetical
           protein Y53F4B.36 protein.
          Length = 297

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 12/58 (20%), Positives = 25/58 (43%)
 Frame = +3

Query: 57  MSLSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVS 230
           MS++V  P +S        V    + + F++  P    ++ D H+   + +    CV+
Sbjct: 182 MSMAVTSPYLSKLDRLPIVVSACKRAMCFIYDRPTNSIILLDTHMHFKRRAVSVLCVA 239


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,769,244
Number of Sequences: 27780
Number of extensions: 261935
Number of successful extensions: 940
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)