Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021281
(586 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S... 104 4e-23
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str... 104 4e-23
At1g57750.1 68414.m06552 cytochrome P450, putative similar to cy... 29 1.7
At2g44980.2 68415.m05601 transcription regulatory protein SNF2, ... 29 2.3
At2g44980.1 68415.m05600 transcription regulatory protein SNF2, ... 29 2.3
At5g07520.1 68418.m00861 glycine-rich protein (GRP18) Oleosin; g... 28 4.0
At4g39480.1 68417.m05585 cytochrome P450 family protein contains... 28 4.0
At5g17650.1 68418.m02069 glycine/proline-rich protein glycine/pr... 28 5.3
At3g12430.1 68416.m01548 expressed protein ; expression supporte... 28 5.3
At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp... 27 7.0
At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp... 27 7.0
At5g01010.1 68418.m00001 expressed protein 27 7.0
At2g05520.1 68415.m00584 glycine-rich protein (GRP) identical to... 27 7.0
At1g80480.1 68414.m09427 PRLI-interacting factor L, putative sim... 27 7.0
At1g76010.1 68414.m08825 expressed protein 27 7.0
At1g48410.2 68414.m05409 argonaute protein (AGO1) identical to S... 27 9.2
At1g48410.1 68414.m05408 argonaute protein (AGO1) identical to S... 27 9.2
>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
roibosomal protein L4, Arabidopsis thaliana,
EMBL:CAA79104
Length = 407
Score = 104 bits (250), Expect = 4e-23
Identities = 43/49 (87%), Positives = 46/49 (93%)
Frame = +2
Query: 254 SESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 400
+ESWGTGRAV+RIPRV GGGTHR+GQ AFGNMCRGGRMFAPTK WRRWH
Sbjct: 70 AESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWH 118
Score = 71.3 bits (167), Expect = 4e-13
Identities = 36/65 (55%), Positives = 43/65 (66%), Gaps = 2/65 (3%)
Frame = +3
Query: 66 SVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEA 239
+ ARPLV+V + T Q LP V AP+RPD+VN VH +S NSRQPY VSK+A
Sbjct: 5 AAARPLVTVQGLDGDMSTDQSTTVTLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKA 64
Query: 240 GHQTS 254
GHQTS
Sbjct: 65 GHQTS 69
Score = 37.9 bits (84), Expect = 0.005
Identities = 16/25 (64%), Positives = 19/25 (76%)
Frame = +1
Query: 442 SVAATGVPALVQARGHIIEKIPGFP 516
++AAT VPALV ARGH IE +P P
Sbjct: 133 AIAATAVPALVMARGHKIENVPEMP 157
>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
similarity to 60S ribosomal protein L1 GB:P49691
Length = 406
Score = 104 bits (250), Expect = 4e-23
Identities = 43/49 (87%), Positives = 46/49 (93%)
Frame = +2
Query: 254 SESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 400
+ESWGTGRAV+RIPRV GGGTHR+GQ AFGNMCRGGRMFAPTK WRRWH
Sbjct: 69 AESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWH 117
Score = 73.3 bits (172), Expect = 1e-13
Identities = 36/68 (52%), Positives = 47/68 (69%), Gaps = 2/68 (2%)
Frame = +3
Query: 57 MSLSVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVS 230
M+ + ARPLV++ + + T Q + LP V AP+RPD+VN VH +S NSRQPY VS
Sbjct: 1 MAAAAARPLVTIQTLDGDMSTDQSSTVVLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVS 60
Query: 231 KEAGHQTS 254
K+AGHQTS
Sbjct: 61 KKAGHQTS 68
Score = 37.9 bits (84), Expect = 0.005
Identities = 16/25 (64%), Positives = 19/25 (76%)
Frame = +1
Query: 442 SVAATGVPALVQARGHIIEKIPGFP 516
++AAT VPALV ARGH IE +P P
Sbjct: 132 AIAATAVPALVMARGHKIENVPEMP 156
>At1g57750.1 68414.m06552 cytochrome P450, putative similar to
cytochrome P450 GI:4688670 from [Catharanthus roseus]
Length = 497
Score = 29.5 bits (63), Expect = 1.7
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = +3
Query: 81 LVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 227
LV +++ SE+++ PLPF K+P +PD++ H + NS+ C+
Sbjct: 351 LVYLHAALSESMR-LYPPLPFNHKSPAKPDVLPSGH-KVDANSKIVICI 397
>At2g44980.2 68415.m05601 transcription regulatory protein SNF2,
putative similar to SNF2P [Oryza sativa (japonica
cultivar-group)] GI:23193483; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain; CG donor site annotated
in one isoform based on protein alignments.
Length = 870
Score = 29.1 bits (62), Expect = 2.3
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -3
Query: 548 VDLLEFVGYNQGKPGIFSIMCPLA*T 471
+ L ++ + QG PG F ++CPL+ T
Sbjct: 88 ISFLSYLKFRQGLPGPFLVLCPLSVT 113
>At2g44980.1 68415.m05600 transcription regulatory protein SNF2,
putative similar to SNF2P [Oryza sativa (japonica
cultivar-group)] GI:23193483; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain; CG donor site annotated
in one isoform based on protein alignments.
Length = 851
Score = 29.1 bits (62), Expect = 2.3
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -3
Query: 548 VDLLEFVGYNQGKPGIFSIMCPLA*T 471
+ L ++ + QG PG F ++CPL+ T
Sbjct: 88 ISFLSYLKFRQGLPGPFLVLCPLSVT 113
>At5g07520.1 68418.m00861 glycine-rich protein (GRP18) Oleosin;
glycine-rich protein 18 (GRP18) PMID:11431566;
Length = 228
Score = 28.3 bits (60), Expect = 4.0
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Frame = +2
Query: 206 LEAALLREQGGWSPNQSESWGTGRAVARIPRVRGGGTHRSGQ---GAFGNMCRGGRMFAP 376
+ AL+R + G P +E + + + ++P G G G+ G FGN GG F
Sbjct: 76 MAVALIRRRMGAKPT-AEGTSSAQPLLKLPVYGGYGGFWGGKKFSGTFGNKPGGGNPFGD 134
Query: 377 TKPW 388
W
Sbjct: 135 ISKW 138
>At4g39480.1 68417.m05585 cytochrome P450 family protein contains
Pfam profile: PF00067 cytochrome P450
Length = 989
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +3
Query: 132 PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 227
P+PF K+P +PD++ H + NSR +C+
Sbjct: 384 PVPFNHKSPAKPDVLPSGH-KVKANSRILFCL 414
Score = 27.5 bits (58), Expect = 7.0
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +3
Query: 132 PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 227
P+PF K+P +PD++ H + NS+ +C+
Sbjct: 857 PVPFQHKSPTKPDVLPSGH-KVDANSKILFCL 887
>At5g17650.1 68418.m02069 glycine/proline-rich protein
glycine/proline-rich protein GPRP - Arabidopsis
thaliana, EMBL:X84315
Length = 173
Score = 27.9 bits (59), Expect = 5.3
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = -3
Query: 359 HHDTCYRRHPDRTYEYHHHGHAEF 288
HH Y H Y Y +HGH +F
Sbjct: 122 HHHGHYGHHHGHGYGYGYHGHGKF 145
>At3g12430.1 68416.m01548 expressed protein ; expression supported
by MPSS
Length = 238
Score = 27.9 bits (59), Expect = 5.3
Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -2
Query: 135 GAWLHPAPSHSSLNTPTLKVGLPID--SFRYFSEAIPLKY 22
G W+H SH+ ++ L VG+ + Y+S + P++Y
Sbjct: 38 GQWIHDVLSHNRFSSHPLVVGVGVQWTPSSYYSASSPVRY 77
>At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein contains Pfam domain PF01805:
Surp module
Length = 844
Score = 27.5 bits (58), Expect = 7.0
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -3
Query: 371 RTYVHHDTCYRRHPDRTY-EYHHHGHAEFGRQHVQYPMIQTG 249
R++ H + +H D + E+HHH H R+H ++ G
Sbjct: 735 RSHHHRSRKHEKHRDSSDDEHHHHRHRSSRRKHEDSSDVEHG 776
>At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein contains Pfam domain PF01805:
Surp module
Length = 843
Score = 27.5 bits (58), Expect = 7.0
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -3
Query: 371 RTYVHHDTCYRRHPDRTY-EYHHHGHAEFGRQHVQYPMIQTG 249
R++ H + +H D + E+HHH H R+H ++ G
Sbjct: 735 RSHHHRSRKHEKHRDSSDDEHHHHRHRSSRRKHEDSSDVEHG 776
>At5g01010.1 68418.m00001 expressed protein
Length = 409
Score = 27.5 bits (58), Expect = 7.0
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = -3
Query: 254 TGLVTSLLAHAVGLPRVLGHRNVNIIDQVR-TDGRLEHEREGLG 126
TG+ +L+ + VG+P+VL ++ I Q+ DG +E +RE G
Sbjct: 204 TGVYKTLVKYLVGVPQVL----LDFIRQINDDDGPMEEQRERYG 243
>At2g05520.1 68415.m00584 glycine-rich protein (GRP) identical to
glycine-rich protein; atGRP (GI:259447) [Arabidopsis
thaliana]
Length = 145
Score = 27.5 bits (58), Expect = 7.0
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +2
Query: 230 QGGWSPNQSESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG 361
QGG Q G GR R +GGG + G G+ G+ CR G
Sbjct: 79 QGGGGRYQG---GGGRYQGGGGRYQGGGGRQGGGGSGGSYCRHG 119
>At1g80480.1 68414.m09427 PRLI-interacting factor L, putative
similar to PRLI-interacting factor L [Arabidopsis
thaliana] GI:11139268; contains Pfam profile PF02492:
Cobalamin synthesis protein/P47K
Length = 444
Score = 27.5 bits (58), Expect = 7.0
Identities = 9/28 (32%), Positives = 13/28 (46%)
Frame = -3
Query: 359 HHDTCYRRHPDRTYEYHHHGHAEFGRQH 276
HHD + H D +++ HH H H
Sbjct: 311 HHDHDHDHHHDHNHDHDHHHHDGHDHHH 338
>At1g76010.1 68414.m08825 expressed protein
Length = 350
Score = 27.5 bits (58), Expect = 7.0
Identities = 18/43 (41%), Positives = 20/43 (46%)
Frame = +2
Query: 230 QGGWSPNQSESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRG 358
+GG+ Q G GR R R RGGG R G G F N G
Sbjct: 305 RGGYDGPQGRGRGRGRG--RGGRGRGGG--RGGDGGFNNRSDG 343
>At1g48410.2 68414.m05409 argonaute protein (AGO1) identical to
SP|O04379 Argonaute protein (AGO1) {Arabidopsis
thaliana}; contains Pfam profiles PF02171: Piwi domain,
PF02170: PAZ domain
Length = 1050
Score = 27.1 bits (57), Expect = 9.2
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +2
Query: 236 GWSPNQSESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAP 376
G P Q + +G + R RGG H+ G+G +G GG P
Sbjct: 65 GQPPQQQQQYGGPQEYQG--RGRGGPPHQGGRGGYGGGRGGGPSSGP 109
>At1g48410.1 68414.m05408 argonaute protein (AGO1) identical to
SP|O04379 Argonaute protein (AGO1) {Arabidopsis
thaliana}; contains Pfam profiles PF02171: Piwi domain,
PF02170: PAZ domain
Length = 1048
Score = 27.1 bits (57), Expect = 9.2
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +2
Query: 236 GWSPNQSESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAP 376
G P Q + +G + R RGG H+ G+G +G GG P
Sbjct: 65 GQPPQQQQQYGGPQEYQG--RGRGGPPHQGGRGGYGGGRGGGPSSGP 109
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,358,335
Number of Sequences: 28952
Number of extensions: 254773
Number of successful extensions: 902
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1151426952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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