Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021280
(701 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_UPI0000D5791C Cluster: PREDICTED: similar to CG4033-PA;... 94 3e-18
UniRef50_P20028 Cluster: DNA-directed RNA polymerase I subunit R... 86 7e-16
UniRef50_A7SSE2 Cluster: Predicted protein; n=1; Nematostella ve... 65 1e-09
UniRef50_A0BY74 Cluster: DNA-directed RNA polymerase; n=2; Param... 65 2e-09
UniRef50_Q9H9Y6 Cluster: DNA-directed RNA polymerase I subunit R... 61 2e-08
UniRef50_A6RAC1 Cluster: DNA-directed RNA polymerase; n=6; Ascom... 61 3e-08
UniRef50_O74633 Cluster: DNA-directed RNA polymerase I subunit R... 57 4e-07
UniRef50_P22138 Cluster: DNA-directed RNA polymerase I subunit R... 57 5e-07
UniRef50_A7AT93 Cluster: DNA-directed RNA polymerase, beta subun... 56 6e-07
UniRef50_Q54BM1 Cluster: DNA-directed RNA polymerase; n=2; Eukar... 56 8e-07
UniRef50_Q0UYS6 Cluster: Putative uncharacterized protein; n=1; ... 56 8e-07
UniRef50_Q4N2L4 Cluster: DNA-directed RNA polymerase, beta subun... 56 1e-06
UniRef50_P28365 Cluster: DNA-directed RNA polymerase I subunit R... 55 1e-06
UniRef50_Q27493 Cluster: DNA-directed RNA polymerase; n=3; Chrom... 54 3e-06
UniRef50_Q6C6G0 Cluster: DNA-directed RNA polymerase; n=1; Yarro... 54 3e-06
UniRef50_Q8SSB7 Cluster: DNA-directed RNA polymerase; n=1; Encep... 52 1e-05
UniRef50_Q5CNH7 Cluster: DNA-directed RNA polymerase; n=2; Crypt... 49 1e-04
UniRef50_A3C638 Cluster: DNA-directed RNA polymerase; n=4; Oryza... 48 3e-04
UniRef50_A4RSZ5 Cluster: DNA-directed RNA polymerase; n=2; Ostre... 46 9e-04
UniRef50_A2EN74 Cluster: DNA-directed RNA polymerase; n=1; Trich... 46 9e-04
UniRef50_UPI00004993B0 Cluster: DNA-directed RNA polymerase subu... 46 0.001
UniRef50_Q98S72 Cluster: DNA-directed RNA polymerase; n=1; Guill... 42 0.015
UniRef50_Q4QA33 Cluster: DNA-directed RNA polymerase; n=6; Trypa... 41 0.034
UniRef50_Q9FXG4 Cluster: DNA-directed RNA polymerase; n=79; Magn... 40 0.045
UniRef50_Q9C8S4 Cluster: DNA-directed RNA polymerase; n=3; Arabi... 40 0.045
UniRef50_Q4QD43 Cluster: DNA-directed RNA polymerase polypeptide... 36 0.96
UniRef50_A5K506 Cluster: DNA-directed RNA polymerase; n=5; cellu... 35 1.7
UniRef50_Q4Q3P2 Cluster: Putative uncharacterized protein; n=3; ... 33 5.1
UniRef50_Q86B02 Cluster: Similar to Dictyostelium discoideum (Sl... 33 9.0
UniRef50_Q7R5G4 Cluster: DNA-directed RNA polymerase; n=1; Giard... 33 9.0
>UniRef50_UPI0000D5791C Cluster: PREDICTED: similar to CG4033-PA;
n=1; Tribolium castaneum|Rep: PREDICTED: similar to
CG4033-PA - Tribolium castaneum
Length = 272
Score = 93.9 bits (223), Expect = 3e-18
Identities = 38/51 (74%), Positives = 45/51 (88%)
Frame = +2
Query: 548 IVEKNEHADEWGGYFVIKGHERLARMLLVTRRNYPVAIKRSGWKMRGNLFS 700
+V+ EH EWGGYFV+KGHERL RMLL+TRRNYP+AIKRSGWK RG++FS
Sbjct: 148 LVKHGEHEQEWGGYFVVKGHERLVRMLLMTRRNYPIAIKRSGWKARGSIFS 198
Score = 85.0 bits (201), Expect = 2e-15
Identities = 46/90 (51%), Positives = 60/90 (66%), Gaps = 2/90 (2%)
Frame = +1
Query: 256 ADLLPSEFELPSGEKVKVTIDEAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKI 435
+DL P EF + +G+K+ + I +A+ + P VPM TVGVKS V P+ECRQRAATYKG
Sbjct: 50 SDLNPVEF-MVNGDKITLEITDASLSCPLVPMGTVGVKSPKVFPSECRQRAATYKGRFIA 108
Query: 436 RVTLCIDG-RSVTIERSLGYLPIMI-SPKC 519
RV I+G R ++ +G LPIMI S KC
Sbjct: 109 RVNWAINGERQTAFDKDMGQLPIMIKSNKC 138
Score = 50.8 bits (116), Expect = 3e-05
Identities = 20/45 (44%), Positives = 30/45 (66%)
Frame = +2
Query: 110 LAQNPSLAYTSHPDYRKPPKIANPYLQSLGAPHIDSFNYMLDDGL 244
+ PSL+ + P++ +PP+ N LQ LG PH+ SFNYM++ GL
Sbjct: 1 MLDEPSLSNITDPNFGRPPESQNVLLQQLGHPHVSSFNYMINQGL 45
>UniRef50_P20028 Cluster: DNA-directed RNA polymerase I subunit
RPA2; n=5; Endopterygota|Rep: DNA-directed RNA
polymerase I subunit RPA2 - Drosophila melanogaster
(Fruit fly)
Length = 1129
Score = 86.2 bits (204), Expect = 7e-16
Identities = 64/196 (32%), Positives = 101/196 (51%), Gaps = 9/196 (4%)
Frame = +2
Query: 140 SHPDYRKPPKIANPYLQSLGAPHIDSFNYMLDDGLKFAKLIYCHPNLSYLVAKRSK*QSM 319
S P++++ PK + +L +LG PH+DSF+ ML GL + + PN + ++ + SM
Sbjct: 17 SRPEFKQIPKKLSRHLANLGGPHVDSFDEMLTVGLDNSAK-HMIPN--HWLSPAGEKISM 73
Query: 320 KQHSLNPMFPWI-Q*GLNLRWSSQQNAGRELLHTRES*RSESLCALTEGLS-------PL 475
K S+ P + Q +++R LH S +C++ G S P+
Sbjct: 74 KVESIWIAKPKVPQDVIDVRTREIYPTDSRQLHVSYS----GMCSVRLGWSVNGVQKTPI 129
Query: 476 RDP*VIYPL*LVQNV-SFG*FIT*GIVEKNEHADEWGGYFVIKGHERLARMLLVTRRNYP 652
P+ L + G +V+ EH EWGG FVI+G+E++ RML++TRRN+P
Sbjct: 130 NMDLGEVPIMLRSKACNLGQATPEEMVKHGEHDSEWGGIFVIRGNEKIVRMLIMTRRNHP 189
Query: 653 VAIKRSGWKMRGNLFS 700
+ +KRS WK RG FS
Sbjct: 190 ICVKRSSWKDRGQNFS 205
Score = 62.5 bits (145), Expect = 1e-08
Identities = 27/86 (31%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Frame = +1
Query: 262 LLPSEFELPSGEKVKVTIDEAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRV 441
++P+ + P+GEK+ + ++ AKP VP D + V+++ + PT+ RQ +Y G +R+
Sbjct: 58 MIPNHWLSPAGEKISMKVESIWIAKPKVPQDVIDVRTREIYPTDSRQLHVSYSGMCSVRL 117
Query: 442 TLCIDG-RSVTIERSLGYLPIMISPK 516
++G + I LG +PIM+ K
Sbjct: 118 GWSVNGVQKTPINMDLGEVPIMLRSK 143
>UniRef50_A7SSE2 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 913
Score = 65.3 bits (152), Expect = 1e-09
Identities = 26/51 (50%), Positives = 38/51 (74%)
Frame = +2
Query: 548 IVEKNEHADEWGGYFVIKGHERLARMLLVTRRNYPVAIKRSGWKMRGNLFS 700
+V KNE + E GGYF++ G E++ RML++ RRNYP+AI R WK RG+ ++
Sbjct: 112 LVRKNEESQEAGGYFIVNGIEKIIRMLILPRRNYPLAIIRPSWKGRGSFYT 162
Score = 35.9 bits (79), Expect = 0.96
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +2
Query: 122 PSLAYTSHPDYRKPPKIANPYLQSLGAPHIDSFNYMLDDGLKFA 253
PSL + +Y + +Q L PHI+SFN+ML++GL A
Sbjct: 13 PSLKNLTLKNYGRLSDTQKQSIQDLVRPHIESFNFMLEEGLPLA 56
>UniRef50_A0BY74 Cluster: DNA-directed RNA polymerase; n=2;
Paramecium tetraurelia|Rep: DNA-directed RNA polymerase
- Paramecium tetraurelia
Length = 1115
Score = 64.9 bits (151), Expect = 2e-09
Identities = 25/51 (49%), Positives = 40/51 (78%)
Frame = +2
Query: 548 IVEKNEHADEWGGYFVIKGHERLARMLLVTRRNYPVAIKRSGWKMRGNLFS 700
+V++ E +E+GGYF+I G+E++ RML++ +RNYP+A KR G+K +G FS
Sbjct: 136 LVQQQEDCNEFGGYFIINGNEKIIRMLIIQKRNYPIAFKRPGYKNKGFNFS 186
Score = 36.3 bits (80), Expect = 0.73
Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 6/108 (5%)
Frame = +1
Query: 214 FIQLYAGRWLEVC*ADLLPSEFELPSGEKVKVTIDEAAF----AKPNVPMDTVGVKSQVV 381
F LY +E+C L P E +P +++ + +P + V
Sbjct: 20 FNYLYTHGLVEIC-RHLSPIEVCVPGNRDIRLPFKNMKIWIEELQIGMPTQQGMLGDNRV 78
Query: 382 LPTECRQRAATYKGELKIRVTLCIDGR-SVTIERSLGYLPIMI-SPKC 519
LPT+CRQ +Y + + ID T+ SLG +PI++ S KC
Sbjct: 79 LPTQCRQMKKSYTAPMLATICREIDDNPKETVRLSLGEIPILVKSQKC 126
>UniRef50_Q9H9Y6 Cluster: DNA-directed RNA polymerase I subunit
RPA2; n=53; Coelomata|Rep: DNA-directed RNA polymerase I
subunit RPA2 - Homo sapiens (Human)
Length = 1135
Score = 61.3 bits (142), Expect = 2e-08
Identities = 24/47 (51%), Positives = 36/47 (76%)
Frame = +2
Query: 548 IVEKNEHADEWGGYFVIKGHERLARMLLVTRRNYPVAIKRSGWKMRG 688
++E +E A+E GGYF+I G E++ RML++ RRN+P+A+ R WK RG
Sbjct: 156 LIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRG 202
Score = 57.2 bits (132), Expect = 4e-07
Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Frame = +1
Query: 268 PSEFELPSGEKVKVTIDEAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTL 447
P EF E++ TI +A + P VP T+ K V P ECR R +TY+G+L +
Sbjct: 63 PFEFAFKD-ERISFTILDAVISPPTVPKGTI-CKEANVYPAECRGRRSTYRGKLTADINW 120
Query: 448 CIDGRSV-TIERSLGYLPIMISPK 516
++G S I++ LGY+PIM+ K
Sbjct: 121 AVNGISKGIIKQFLGYVPIMVKSK 144
Score = 38.7 bits (86), Expect = 0.14
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +2
Query: 104 KKLAQNPSLAYTSHPDYRKPPKIANPYLQSLGAPHIDSFNYMLDDGLKFA 253
+ L PSL + + P Y P + LQ L H++SFNY + +GL A
Sbjct: 8 RNLPSGPSLKHLTDPSYGIPREQQKAALQELTRAHVESFNYAVHEGLGLA 57
>UniRef50_A6RAC1 Cluster: DNA-directed RNA polymerase; n=6;
Ascomycota|Rep: DNA-directed RNA polymerase -
Ajellomyces capsulatus NAm1
Length = 1214
Score = 60.9 bits (141), Expect = 3e-08
Identities = 24/51 (47%), Positives = 39/51 (76%)
Frame = +2
Query: 548 IVEKNEHADEWGGYFVIKGHERLARMLLVTRRNYPVAIKRSGWKMRGNLFS 700
+V++ E ++E GGYF++ G+E+L RML+V RRN+P+AI RS + RG ++
Sbjct: 180 LVQRKEESEELGGYFIVNGNEKLIRMLIVGRRNFPMAIIRSSFTKRGQTYT 230
Score = 46.0 bits (104), Expect = 9e-04
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Frame = +1
Query: 286 PSGEKVKVTIDEAAFAKPNVPMDT-VGVKSQVVLPTECRQRAATYKGELKIRVTLCI-DG 459
P K+ V I E K +P +++ + P+ECR+R ATY+G L+ R+ + +G
Sbjct: 90 PRRNKLSVRITELFLEKAMLPASNKFSTRNREIYPSECRERHATYRGRLRARLEYRVNNG 149
Query: 460 RSVTIERSLGYLPIMI-SPKC 519
R LG +PIM+ S +C
Sbjct: 150 EWKESVRELGQVPIMLRSNRC 170
>UniRef50_O74633 Cluster: DNA-directed RNA polymerase I subunit
RPA2; n=14; Ascomycota|Rep: DNA-directed RNA polymerase
I subunit RPA2 - Neurospora crassa
Length = 1234
Score = 57.2 bits (132), Expect = 4e-07
Identities = 24/47 (51%), Positives = 35/47 (74%)
Frame = +2
Query: 548 IVEKNEHADEWGGYFVIKGHERLARMLLVTRRNYPVAIKRSGWKMRG 688
+V + E ++E GGYF++ G E+L RMLLV RRN+P+AI R ++ RG
Sbjct: 174 LVARKEESEELGGYFIVNGIEKLIRMLLVNRRNFPLAIVRPSFQNRG 220
Score = 45.2 bits (102), Expect = 0.002
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Frame = +1
Query: 286 PSGE-KVKVTIDEAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCI-DG 459
P G+ K+ + K VP K++ + P ECR+R +Y+G+L I DG
Sbjct: 84 PQGKNKLTIRYKSIELQKSQVPPTNRWAKNREIFPAECRERHVSYRGKLSATFEYRINDG 143
Query: 460 RSVTIERSLGYLPIMI-SPKC 519
R LG +PIM+ S KC
Sbjct: 144 EPHEFVRELGQMPIMVKSNKC 164
>UniRef50_P22138 Cluster: DNA-directed RNA polymerase I subunit
RPA2; n=22; Eukaryota|Rep: DNA-directed RNA polymerase I
subunit RPA2 - Saccharomyces cerevisiae (Baker's yeast)
Length = 1203
Score = 56.8 bits (131), Expect = 5e-07
Identities = 25/51 (49%), Positives = 36/51 (70%)
Frame = +2
Query: 548 IVEKNEHADEWGGYFVIKGHERLARMLLVTRRNYPVAIKRSGWKMRGNLFS 700
+V+ E +DE GGYF++ G E+L RML+V RRN+P+AI R + RG +S
Sbjct: 180 LVQHKEESDEIGGYFIVNGIEKLIRMLIVQRRNHPMAIIRPSFANRGASYS 230
Score = 43.6 bits (98), Expect = 0.005
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 6/82 (7%)
Frame = +1
Query: 292 GEKVKVTIDEAAFAKPNVPMDTVGVKSQV---VLPTECRQRAATYKGELKIRVTLCI-DG 459
G K+ V++++ + AKP M GV S V V P+E RQR +Y+G+L +++ + +G
Sbjct: 92 GNKLSVSVEQVSIAKP---MSNDGVSSAVERKVYPSESRQRLTSYRGKLLLKLKWSVNNG 148
Query: 460 RSVTIE-RSLGYLPIMI-SPKC 519
E R G LP+M+ S +C
Sbjct: 149 EENLFEVRDCGGLPVMLQSNRC 170
>UniRef50_A7AT93 Cluster: DNA-directed RNA polymerase, beta subunit,
putative; n=1; Babesia bovis|Rep: DNA-directed RNA
polymerase, beta subunit, putative - Babesia bovis
Length = 1283
Score = 56.4 bits (130), Expect = 6e-07
Identities = 25/51 (49%), Positives = 36/51 (70%)
Frame = +2
Query: 548 IVEKNEHADEWGGYFVIKGHERLARMLLVTRRNYPVAIKRSGWKMRGNLFS 700
+VE+ E DE GGYFV++G+ER+ R L+V R NYP+AIK + + LF+
Sbjct: 156 MVEQGEDIDEPGGYFVVRGNERIVRQLIVLRSNYPLAIKSGNNRTKHVLFT 206
>UniRef50_Q54BM1 Cluster: DNA-directed RNA polymerase; n=2;
Eukaryota|Rep: DNA-directed RNA polymerase -
Dictyostelium discoideum AX4
Length = 1130
Score = 56.0 bits (129), Expect = 8e-07
Identities = 21/47 (44%), Positives = 33/47 (70%)
Frame = +2
Query: 548 IVEKNEHADEWGGYFVIKGHERLARMLLVTRRNYPVAIKRSGWKMRG 688
++E E E GGYF++ G+E++ RML++T+ N+PVA+ R W RG
Sbjct: 140 LIESREEELEQGGYFIVNGNEKVVRMLVMTKANHPVALHRKAWTNRG 186
>UniRef50_Q0UYS6 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 1101
Score = 56.0 bits (129), Expect = 8e-07
Identities = 23/47 (48%), Positives = 34/47 (72%)
Frame = +2
Query: 548 IVEKNEHADEWGGYFVIKGHERLARMLLVTRRNYPVAIKRSGWKMRG 688
+V+ E ++E GGYF++ G E++ RML V RRN+P+AIKR + RG
Sbjct: 176 LVKAKEESEELGGYFIVNGIEKIIRMLQVNRRNFPMAIKRGAFTNRG 222
Score = 44.0 bits (99), Expect = 0.004
Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Frame = +1
Query: 280 ELPSGEKVKVTIDEAAFAKPNVP-MDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCID 456
E+ ++ V I + K +P + V +K++ +LP ECR+R ATY+G+L+ R+ ++
Sbjct: 84 EVGQRNRLSVRIQDVFLDKSVLPPSNKVALKNRNILPAECRERHATYRGKLRARLEWKVN 143
Query: 457 GRSVTIE-RSLGYLPIMI-SPKC 519
E LG +PIM+ S +C
Sbjct: 144 NGDWREEVCDLGAVPIMLRSNRC 166
>UniRef50_Q4N2L4 Cluster: DNA-directed RNA polymerase, beta subunit,
putative; n=2; Theileria|Rep: DNA-directed RNA
polymerase, beta subunit, putative - Theileria parva
Length = 1235
Score = 55.6 bits (128), Expect = 1e-06
Identities = 23/51 (45%), Positives = 35/51 (68%)
Frame = +2
Query: 548 IVEKNEHADEWGGYFVIKGHERLARMLLVTRRNYPVAIKRSGWKMRGNLFS 700
++++ E ADE GGYF+IKG+E++ R L+V R NYP+A K + LF+
Sbjct: 144 MIKQGEDADEPGGYFIIKGNEKMLRQLIVPRSNYPIAFKSDSNSQKNVLFT 194
>UniRef50_P28365 Cluster: DNA-directed RNA polymerase I subunit
RPA2; n=2; Intramacronucleata|Rep: DNA-directed RNA
polymerase I subunit RPA2 - Euplotes octocarinatus
Length = 1166
Score = 55.2 bits (127), Expect = 1e-06
Identities = 22/51 (43%), Positives = 37/51 (72%)
Frame = +2
Query: 548 IVEKNEHADEWGGYFVIKGHERLARMLLVTRRNYPVAIKRSGWKMRGNLFS 700
+ ++ E E+GGYF++ G+E++ RML+V +RN+P+A KRS + RG F+
Sbjct: 143 LAKRGEDMLEFGGYFIVNGNEKVIRMLIVPKRNFPIAFKRSKFLERGKDFT 193
>UniRef50_Q27493 Cluster: DNA-directed RNA polymerase; n=3;
Chromadorea|Rep: DNA-directed RNA polymerase -
Caenorhabditis elegans
Length = 1127
Score = 54.4 bits (125), Expect = 3e-06
Identities = 23/51 (45%), Positives = 34/51 (66%)
Frame = +2
Query: 548 IVEKNEHADEWGGYFVIKGHERLARMLLVTRRNYPVAIKRSGWKMRGNLFS 700
+V E E GGYF++ G E++ R+L+ RRN+P+AI R +K +G LFS
Sbjct: 126 LVVAGEEPIEKGGYFIVNGSEKVIRLLIANRRNFPIAIIRKTFKEKGKLFS 176
Score = 50.4 bits (115), Expect = 4e-05
Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Frame = +1
Query: 256 ADLLPSE-FELPSGEKVKVTIDEAAFAKPNVPMDTVGVKSQV-VLPTECRQRAATYKGEL 429
A +P+E F L +G+ V + A KP + + +LP ECRQR TY G L
Sbjct: 25 AQAVPAEKFRLKNGDAVTMKFTSAQLHKPTLDTGAKLTSDTLPLLPAECRQRGLTYAGNL 84
Query: 430 KIRVTLCIDG-RSVTIERSLGYLPIMI 507
K+ + + ++G R IE LG +PIM+
Sbjct: 85 KVGIDVHVNGSRLDIIEIILGKVPIML 111
>UniRef50_Q6C6G0 Cluster: DNA-directed RNA polymerase; n=1; Yarrowia
lipolytica|Rep: DNA-directed RNA polymerase - Yarrowia
lipolytica (Candida lipolytica)
Length = 1165
Score = 54.0 bits (124), Expect = 3e-06
Identities = 24/51 (47%), Positives = 36/51 (70%)
Frame = +2
Query: 548 IVEKNEHADEWGGYFVIKGHERLARMLLVTRRNYPVAIKRSGWKMRGNLFS 700
+V E ++E GGYFVI G E+L R+L+V RRN+P+AI R + RG+ ++
Sbjct: 161 MVAHKEESEEQGGYFVINGLEKLIRLLIVQRRNHPLAIIRKSFTKRGSNYT 211
Score = 43.2 bits (97), Expect = 0.006
Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Frame = +1
Query: 292 GEKVKVTIDEAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCIDGRSVT 471
G ++ + + +P V + ++ V P+ECR+R ATY+ + + + ++G
Sbjct: 74 GNRLAIRVANVQLGRPTVSANDKTTINRKVFPSECRERMATYRARMVLTLGYSVNGGPEK 133
Query: 472 IE-RSLGYLPIMI-SPKC 519
E R +G +PIM+ S +C
Sbjct: 134 FESRDVGMIPIMMGSNRC 151
>UniRef50_Q8SSB7 Cluster: DNA-directed RNA polymerase; n=1;
Encephalitozoon cuniculi|Rep: DNA-directed RNA
polymerase - Encephalitozoon cuniculi
Length = 1062
Score = 52.4 bits (120), Expect = 1e-05
Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Frame = +1
Query: 298 KVKVTIDEAAFAKPNVP-MDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCIDGRS-VT 471
K K+ ++E A P + D + V ++ LP ECR+R TYKG++ +RV+L D + VT
Sbjct: 49 KTKIIVEEIHVAPPFLSDKDHISVDRRL-LPRECRERGLTYKGKMVVRVSLFHDNKHVVT 107
Query: 472 IERSLGYLPIMI 507
++S G+ PIM+
Sbjct: 108 EDKSAGHFPIMV 119
Score = 36.3 bits (80), Expect = 0.73
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Frame = +2
Query: 545 GIVEKNE---HADEWGGYFVIKGHERLARMLLVTRRNYPVAIK 664
GI KNE DE GGYF+I G +R R ++ +RN+ A K
Sbjct: 128 GIKNKNEVGEDEDEIGGYFIINGIDRFIRFNIMQKRNHIFAFK 170
>UniRef50_Q5CNH7 Cluster: DNA-directed RNA polymerase; n=2;
Cryptosporidium|Rep: DNA-directed RNA polymerase -
Cryptosporidium hominis
Length = 1281
Score = 49.2 bits (112), Expect = 1e-04
Identities = 20/40 (50%), Positives = 29/40 (72%)
Frame = +2
Query: 548 IVEKNEHADEWGGYFVIKGHERLARMLLVTRRNYPVAIKR 667
+VEK E +E GGYF+I G+ER+ R ++ R NYP+ +KR
Sbjct: 144 LVEKGEDPNEVGGYFIINGNERVIRYVIQQRCNYPIGLKR 183
>UniRef50_A3C638 Cluster: DNA-directed RNA polymerase; n=4; Oryza
sativa|Rep: DNA-directed RNA polymerase - Oryza sativa
subsp. japonica (Rice)
Length = 1134
Score = 47.6 bits (108), Expect = 3e-04
Identities = 20/47 (42%), Positives = 30/47 (63%)
Frame = +2
Query: 548 IVEKNEHADEWGGYFVIKGHERLARMLLVTRRNYPVAIKRSGWKMRG 688
++ E A E GGYF+ G ERL R+L++ +RNYP+ + R + RG
Sbjct: 103 LIFHGEEATEMGGYFICGGMERLVRILILQKRNYPMGLIRGSFVNRG 149
>UniRef50_A4RSZ5 Cluster: DNA-directed RNA polymerase; n=2;
Ostreococcus|Rep: DNA-directed RNA polymerase -
Ostreococcus lucimarinus CCE9901
Length = 1145
Score = 46.0 bits (104), Expect = 9e-04
Identities = 21/51 (41%), Positives = 32/51 (62%)
Frame = +2
Query: 548 IVEKNEHADEWGGYFVIKGHERLARMLLVTRRNYPVAIKRSGWKMRGNLFS 700
+V + E A E GGYF+I G ER+ RM++ RR++ + + R + R LFS
Sbjct: 160 LVARGEEAHEAGGYFIINGIERMIRMIIQQRRHHILGLCRRAFTKRSPLFS 210
>UniRef50_A2EN74 Cluster: DNA-directed RNA polymerase; n=1;
Trichomonas vaginalis G3|Rep: DNA-directed RNA
polymerase - Trichomonas vaginalis G3
Length = 1104
Score = 46.0 bits (104), Expect = 9e-04
Identities = 19/46 (41%), Positives = 29/46 (63%)
Frame = +2
Query: 563 EHADEWGGYFVIKGHERLARMLLVTRRNYPVAIKRSGWKMRGNLFS 700
E E GGYF+ G+E+L R+L++ R+NY A+ R + RG F+
Sbjct: 137 EEPTEAGGYFIYSGYEKLLRLLILNRQNYVFALNRPSFHSRGPTFT 182
>UniRef50_UPI00004993B0 Cluster: DNA-directed RNA polymerase
subunit; n=1; Entamoeba histolytica HM-1:IMSS|Rep:
DNA-directed RNA polymerase subunit - Entamoeba
histolytica HM-1:IMSS
Length = 1106
Score = 45.6 bits (103), Expect = 0.001
Identities = 19/46 (41%), Positives = 28/46 (60%)
Frame = +2
Query: 563 EHADEWGGYFVIKGHERLARMLLVTRRNYPVAIKRSGWKMRGNLFS 700
E E GGYF+I G ER RM++ + N+P+A+ R W +G F+
Sbjct: 134 EDPHEIGGYFIINGIERYLRMIVYAKPNHPLAVTRPSWTNKGAHFT 179
Score = 39.1 bits (87), Expect = 0.10
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +1
Query: 379 VLPTECRQRAATYKGELKIRVTLCIDGRSVTIERSLGYLPIMI-SPKCVI 525
+ P CR A TY G +K+ +T+ + + TIE G +PIM+ S KC I
Sbjct: 70 LFPYMCRSAALTYSGRIKLTITIKENDSNKTIEVDGGEIPIMVGSSKCWI 119
>UniRef50_Q98S72 Cluster: DNA-directed RNA polymerase; n=1;
Guillardia theta|Rep: DNA-directed RNA polymerase -
Guillardia theta (Cryptomonas phi)
Length = 1109
Score = 41.9 bits (94), Expect = 0.015
Identities = 20/51 (39%), Positives = 29/51 (56%)
Frame = +2
Query: 548 IVEKNEHADEWGGYFVIKGHERLARMLLVTRRNYPVAIKRSGWKMRGNLFS 700
+ E +E E GGYF+ G E+L R+++V RRNY + +RG FS
Sbjct: 128 LTEIDEEEFENGGYFITNGTEKLIRLIIVPRRNYIFTSSKISNTLRGKNFS 178
>UniRef50_Q4QA33 Cluster: DNA-directed RNA polymerase; n=6;
Trypanosomatidae|Rep: DNA-directed RNA polymerase -
Leishmania major
Length = 1616
Score = 40.7 bits (91), Expect = 0.034
Identities = 20/46 (43%), Positives = 27/46 (58%)
Frame = +2
Query: 563 EHADEWGGYFVIKGHERLARMLLVTRRNYPVAIKRSGWKMRGNLFS 700
E E GGYF++ G ER+ R LL+ R N P+ I R + +G FS
Sbjct: 498 EEQKEVGGYFIMNGGERILRALLMQRCNVPINIYREKFVTQGPHFS 543
>UniRef50_Q9FXG4 Cluster: DNA-directed RNA polymerase; n=79;
Magnoliophyta|Rep: DNA-directed RNA polymerase -
Arabidopsis thaliana (Mouse-ear cress)
Length = 1233
Score = 40.3 bits (90), Expect = 0.045
Identities = 16/51 (31%), Positives = 32/51 (62%)
Frame = +2
Query: 548 IVEKNEHADEWGGYFVIKGHERLARMLLVTRRNYPVAIKRSGWKMRGNLFS 700
+++ E E GGYF++ G ER+ R ++ +RN+P ++ R+ ++ R +S
Sbjct: 175 LLKCKESTSEMGGYFILNGIERVFRCVIAPKRNHPTSMIRNSFRDRKEGYS 225
>UniRef50_Q9C8S4 Cluster: DNA-directed RNA polymerase; n=3;
Arabidopsis thaliana|Rep: DNA-directed RNA polymerase -
Arabidopsis thaliana (Mouse-ear cress)
Length = 1114
Score = 40.3 bits (90), Expect = 0.045
Identities = 16/51 (31%), Positives = 32/51 (62%)
Frame = +2
Query: 548 IVEKNEHADEWGGYFVIKGHERLARMLLVTRRNYPVAIKRSGWKMRGNLFS 700
+++ E E GGYF++ G ER+ R ++ +RN+P ++ R+ ++ R +S
Sbjct: 93 LLKCKESTSEMGGYFILNGIERVFRCVIAPKRNHPTSMIRNSFRDRKEGYS 143
>UniRef50_Q4QD43 Cluster: DNA-directed RNA polymerase polypeptide,
putative; n=7; Trypanosomatidae|Rep: DNA-directed RNA
polymerase polypeptide, putative - Leishmania major
Length = 1132
Score = 35.9 bits (79), Expect = 0.96
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
Frame = +1
Query: 373 QVVLPTECRQRAATYKGEL--KIRVTLCIDGRSVTIER--SLGYLPIMISPKC 519
++V P ECR R TY+G++ ++ T R++ +E+ +G +PIM+ KC
Sbjct: 91 KLVTPQECRIRDMTYRGDMIVDVQYTSRDRSRAMLVEKDVKIGTIPIMLKSKC 143
>UniRef50_A5K506 Cluster: DNA-directed RNA polymerase; n=5; cellular
organisms|Rep: DNA-directed RNA polymerase - Plasmodium
vivax
Length = 1562
Score = 35.1 bits (77), Expect = 1.7
Identities = 17/77 (22%), Positives = 36/77 (46%)
Frame = +1
Query: 277 FELPSGEKVKVTIDEAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCID 456
F S + +K + + P + D ++ P C+ A TY+GE+ +++ +
Sbjct: 137 FNRKSTDSIKFYVSDIKIKNPVLKNDKGETRNDY--PYLCKLSARTYEGEITLKINKKTN 194
Query: 457 GRSVTIERSLGYLPIMI 507
++ S GY+P+M+
Sbjct: 195 DEIISTTVSAGYIPVMV 211
>UniRef50_Q4Q3P2 Cluster: Putative uncharacterized protein; n=3;
Leishmania|Rep: Putative uncharacterized protein -
Leishmania major
Length = 1378
Score = 33.5 bits (73), Expect = 5.1
Identities = 21/63 (33%), Positives = 30/63 (47%)
Frame = +1
Query: 286 PSGEKVKVTIDEAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCIDGRS 465
PSGE D A P +TVGV S PT AT + E ++R+ +C+DG +
Sbjct: 650 PSGEAAARKADVPAAPAVEKPAETVGVASDAT-PT------ATLESEKQVRLVVCVDGTA 702
Query: 466 VTI 474
+
Sbjct: 703 TVL 705
>UniRef50_Q86B02 Cluster: Similar to Dictyostelium discoideum (Slime
mold). Nucleotide exchange factor RasGEF P; n=3;
Eukaryota|Rep: Similar to Dictyostelium discoideum
(Slime mold). Nucleotide exchange factor RasGEF P -
Dictyostelium discoideum (Slime mold)
Length = 2454
Score = 32.7 bits (71), Expect = 9.0
Identities = 17/37 (45%), Positives = 23/37 (62%)
Frame = -1
Query: 365 TPTVSMGTLGLANAASSIVTLTFSPLGNSNSDGNRSA 255
TP V L+N++SSI T T SPL +S+S + SA
Sbjct: 199 TPVVQQSQQQLSNSSSSIPTSTSSPLQSSSSSSSSSA 235
>UniRef50_Q7R5G4 Cluster: DNA-directed RNA polymerase; n=1; Giardia
lamblia ATCC 50803|Rep: DNA-directed RNA polymerase -
Giardia lamblia ATCC 50803
Length = 1238
Score = 32.7 bits (71), Expect = 9.0
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Frame = +1
Query: 385 PTECRQRAATYKGELKIRVTLCIDGRSVT---IERSLGYLPIMI-SPKCVI 525
P ECRQR TY + I V +S E +GY+PIM+ S +C++
Sbjct: 100 PHECRQRNMTYAAPITIDVRCKASNKSSVQYYKEICIGYIPIMLRSNRCIL 150
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 726,621,590
Number of Sequences: 1657284
Number of extensions: 14853902
Number of successful extensions: 32874
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 31803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32865
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55785129165
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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