Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021280
         (701 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    52   6e-08
SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit Cut9|...    28   1.5  
SPBC1347.08c |||ribonuclease H2 complex subunit|Schizosaccharomy...    27   2.6  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    27   2.6  
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc...    27   2.6  
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    27   3.4  
SPAC823.10c |||mitochondrial carrier with solute carrier repeats...    26   4.5  
SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1 |Schizosac...    25   7.9  
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...    25   7.9  
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|...    25   7.9  

>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
           Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 52.4 bits (120), Expect = 6e-08
 Identities = 21/51 (41%), Positives = 34/51 (66%)
 Frame = +2

Query: 548 IVEKNEHADEWGGYFVIKGHERLARMLLVTRRNYPVAIKRSGWKMRGNLFS 700
           ++   E ++E GGYF++ G E+L RML++ +RN+P AI R  +  RG  +S
Sbjct: 212 LIAHKEESEEMGGYFIVNGIEKLIRMLILPKRNHPTAIIRPSFANRGTSYS 262



 Score = 45.6 bits (103), Expect = 7e-06
 Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
 Frame = +1

Query: 283 LPSGEKVKVTIDEAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCIDGR 462
           L  G K+   +DE   AKP +        ++ V P E R+R  TYK  L ++ +  ++G 
Sbjct: 122 LKFGNKISFRVDEVQIAKPMLSSRERSSINRKVYPAEARERLTTYKSRLVLKFSWSVNGG 181

Query: 463 SVTIE-RSLGYLPIMI-SPKC 519
               E R +G +PIM+ S +C
Sbjct: 182 PRQSEMREVGMIPIMVRSNRC 202



 Score = 29.9 bits (64), Expect = 0.37
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +2

Query: 152 YRKPPKIAN--PYLQSLGAPHIDSFNYMLDDGL 244
           ++ PPK     P LQ    PH+DSFN + + GL
Sbjct: 65  FKNPPKDGTSFPDLQKAVKPHVDSFNALTNAGL 97


>SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit
           Cut9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
 Frame = -1

Query: 368 LTPTVSMGTLGLANAASSIVTLTFSPL----GNSNSDGN 264
           +TP  SMG L   N+ S + TLT SP+     N+++DG+
Sbjct: 31  MTPP-SMGALNANNSNSQLSTLTISPMTYLANNTSTDGS 68


>SPBC1347.08c |||ribonuclease H2 complex subunit|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 293

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +1

Query: 265 LPSEFELPSGEKVKVTIDEAAFAKPNVPMDTVGVKSQVVLPTECR 399
           LP  F+L     VK+ + +A  A+ N+P   V    + + P + R
Sbjct: 140 LPKTFQLDESSVVKILLRKAKVAQENLPPSIVTELKKQLAPLDLR 184


>SPCC18.03 |||shuttle craft like transcriptional
            regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = +2

Query: 101  PKKLAQNPSLAYTSHPDYR-KPPKIANPYLQSLGAPHIDSFNYMLDDG 241
            P  L +  +L +  HP+   KP  +  P  ++  A HID  +   D G
Sbjct: 902  PNMLLKEANLYHLQHPEIPLKPDSLLGPEEENATASHIDGSSNASDSG 949


>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 940

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = -2

Query: 283 TQIRMAIDQLSKLQAIVQHIIE*IYVRRSKTLKVRICYFW 164
           T +R+ I+  S L +I+ H+I  +   R+K LK  + Y+W
Sbjct: 38  TILRVVINGDS-LPSILMHVIRFVMPSRNKELKKLLYYYW 76


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 493 LPIMISPKCVIWLIYHLRN 549
           LP+ +SP C  + I+H+RN
Sbjct: 285 LPLELSPGCPFYKIWHIRN 303


>SPAC823.10c |||mitochondrial carrier with solute carrier
           repeats|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 296

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -3

Query: 171 IFGGFL*SGWLVYANDGFWASFFGF 97
           I+  FL S  LVYAN+GF     GF
Sbjct: 244 IYKNFLHSAKLVYANEGFRGFLDGF 268


>SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = -1

Query: 365 TPTVSMGTLGLANAASSIVTLTFSPLGNSNSDGNRSA 255
           TPTVSM     +  +S ++T + SP  +++ DG+ S+
Sbjct: 467 TPTVSMSIAATSFGSSLVLTASASP-SSTSVDGSSSS 502


>SPAC926.04c |hsp90|swo1|heat shock protein
           Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 704

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
 Frame = -3

Query: 387 WEDHLRFNPYCIHGNIGFSECCFID--CHFDLFATR 286
           WEDHL    + + G + F    F+      DLF  +
Sbjct: 295 WEDHLAVKHFSVEGQLEFRAILFVPRRAPMDLFEAK 330


>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 785

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 16/60 (26%), Positives = 24/60 (40%)
 Frame = -3

Query: 675 HPDRLMATG*FLRVTNNIRARRSWPFITKYPPHSSACSFFSTIPQVINQPNDTFWTNHNG 496
           H   L +    L +  +I A   WP      PH   C+F   +   I+Q  D + + H G
Sbjct: 526 HNSALQSAKPALDLNVSILASTFWPI--DLSPHKIKCNFPKVLLAQIDQFTDFYLSKHTG 583


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,041,626
Number of Sequences: 5004
Number of extensions: 64454
Number of successful extensions: 166
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)