Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021280
(701 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0498 - 18342517-18342960,18343164-18343397,18343569-183437... 42 4e-04
04_01_0042 + 473912-474058,474208-474349,474442-476264 31 0.89
09_04_0550 - 18481095-18481496,18482623-18483898,18485769-18485821 29 2.7
09_04_0548 - 18469636-18470037,18471164-18472705,18474052-184744... 29 2.7
09_04_0546 - 18460309-18461859,18462593-18463015,18463415-18463540 29 2.7
08_02_1151 - 24712200-24713750,24714587-24715009,24716076-24716201 29 2.7
06_02_0206 + 13005863-13005966,13006918-13007080,13008534-130086... 29 3.6
03_06_0649 - 35289996-35290436 29 4.7
03_02_0631 + 9969841-9969868,9969965-9970082,9970186-9970828,997... 29 4.7
02_05_1033 + 33642479-33642688,33643089-33643343,33643479-336436... 29 4.7
02_01_0648 + 4828668-4829585,4829677-4830330 28 8.3
>10_08_0498 -
18342517-18342960,18343164-18343397,18343569-18343781,
18344095-18344238,18344348-18344470,18345094-18345169,
18345252-18345355,18345745-18345819,18345942-18346106,
18346248-18346346,18346478-18346677,18346767-18346846,
18346922-18347049,18347936-18348048,18348580-18348672,
18349264-18349348,18350116-18350233,18350326-18350399,
18350485-18350537,18350624-18350804,18351219-18351264,
18351355-18351432,18351556-18351626,18351735-18351798,
18352064-18352071
Length = 1022
Score = 42.3 bits (95), Expect = 4e-04
Identities = 17/36 (47%), Positives = 25/36 (69%)
Frame = +2
Query: 581 GGYFVIKGHERLARMLLVTRRNYPVAIKRSGWKMRG 688
GGYF+ G ERL R+L++ +RNYP+ + R + RG
Sbjct: 2 GGYFICGGMERLVRILILQKRNYPMGLIRGSFVNRG 37
>04_01_0042 + 473912-474058,474208-474349,474442-476264
Length = 703
Score = 31.1 bits (67), Expect = 0.89
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = -3
Query: 387 WEDHLRFNPYCIHGNIGFSECCFID--CHFDLFATR 286
WEDHL + + G + F F+ FDLF TR
Sbjct: 298 WEDHLAVKHFSVEGQLEFKAILFVPRRAPFDLFDTR 333
>09_04_0550 - 18481095-18481496,18482623-18483898,18485769-18485821
Length = 576
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = -3
Query: 387 WEDHLRFNPYCIHGNIGFSECCFID--CHFDLFATR 286
WE+HL + + G + F F+ FDLF TR
Sbjct: 39 WEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTR 74
>09_04_0548 -
18469636-18470037,18471164-18472705,18474052-18474474,
18474874-18474999
Length = 830
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = -3
Query: 387 WEDHLRFNPYCIHGNIGFSECCFID--CHFDLFATR 286
WE+HL + + G + F F+ FDLF TR
Sbjct: 293 WEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTR 328
>09_04_0546 - 18460309-18461859,18462593-18463015,18463415-18463540
Length = 699
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = -3
Query: 387 WEDHLRFNPYCIHGNIGFSECCFID--CHFDLFATR 286
WE+HL + + G + F F+ FDLF TR
Sbjct: 293 WEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTR 328
>08_02_1151 - 24712200-24713750,24714587-24715009,24716076-24716201
Length = 699
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = -3
Query: 387 WEDHLRFNPYCIHGNIGFSECCFID--CHFDLFATR 286
WE+HL + + G + F F+ FDLF TR
Sbjct: 293 WEEHLAVKHFSVEGQLEFKAVLFVPKRAPFDLFDTR 328
>06_02_0206 +
13005863-13005966,13006918-13007080,13008534-13008632,
13008704-13008817,13009094-13009254,13009746-13009827,
13009972-13010057,13011563-13011742,13011913-13012424,
13012844-13013478
Length = 711
Score = 29.1 bits (62), Expect = 3.6
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +2
Query: 101 PKKLAQNPSLAYTSHPDYRKPPKIANPYLQSLGAPHIDSFNYMLD 235
P + A PS+ S DY KP + + L S+G P S N LD
Sbjct: 358 PVEPAVGPSIDLLSGDDYFKPEPVNSQALVSVGNPPAASANNTLD 402
>03_06_0649 - 35289996-35290436
Length = 146
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 206 HIDSFNYMLDDGLKFAKLIYCHPNLSYLVAKRSK 307
H+ Y + G+ F YCHP S L+A+R+K
Sbjct: 111 HMTEAMYRVVAGMFFQDGRYCHPPFSTLLARRNK 144
>03_02_0631 +
9969841-9969868,9969965-9970082,9970186-9970828,
9971146-9971935,9972002-9972051,9972618-9972704
Length = 571
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +1
Query: 289 SGEKVKVTIDEAAFAKPNVPMDTVGVKSQVVLPTE 393
SGEKVKV+ D+AA P V + + K VV E
Sbjct: 177 SGEKVKVSTDDAAGHTPMVAVRALEKKVSVVASAE 211
>02_05_1033 +
33642479-33642688,33643089-33643343,33643479-33643603,
33643827-33643908,33644008-33644076,33644102-33644341,
33644431-33644496,33645087-33645155,33645229-33645366,
33645681-33645754,33646146-33646255,33646428-33646525,
33646595-33646633,33646771-33646890,33646984-33647109,
33647321-33647382,33647467-33647518,33648182-33648436
Length = 729
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +1
Query: 259 DLLPSEFELPSGEKVKVTIDEAAFAKPNVPMDTVGVKSQVVLPTEC 396
++L S+ ++P G+K +++ DE + D +KSQ L TEC
Sbjct: 331 EVLLSQKKMPDGQKEEISQDEYKRGISSWNFDMDDLKSQASLITEC 376
>02_01_0648 + 4828668-4829585,4829677-4830330
Length = 523
Score = 27.9 bits (59), Expect = 8.3
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 209 CEALQDFEGTDLLFLVVFYNLGGLCTPMMGFGLVFLDSC*FNYVFHF 69
CE +DF G D F ++ + G P M FGLV ++ +FHF
Sbjct: 436 CE--RDFRGAD--FELIPFGAGRRMCPGMAFGLVHVELALAALLFHF 478
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,435,306
Number of Sequences: 37544
Number of extensions: 404562
Number of successful extensions: 916
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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