Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021280
         (701 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40458| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_9053| Best HMM Match : TIG (HMM E-Value=0)                          29   2.8  
SB_46060| Best HMM Match : Astacin (HMM E-Value=1.8e-17)               29   2.8  
SB_55930| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_5096| Best HMM Match : NAD_binding_6 (HMM E-Value=0.044)            28   6.4  
SB_22016| Best HMM Match : HSP90 (HMM E-Value=0)                       28   8.4  

>SB_40458| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1383

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 22/71 (30%), Positives = 34/71 (47%)
 Frame = -1

Query: 587 IHPIHQHVHFSQQFLR**ISQMTHFGLIIMGK*PKDLSMVTDLPSMHRVTLIFNSPLYVA 408
           ++P H H++ S+QF    ++Q T   +II      DL+        HR TL+  +P Y +
Sbjct: 71  LNPYHNHLYPSRQFQSRNLAQETQCLIIIRS---LDLTQ-NSFHRKHRQTLLRKTPRYQS 126

Query: 407 ALCRHSVGRTT 375
              R    RTT
Sbjct: 127 RAPRPQAYRTT 137


>SB_9053| Best HMM Match : TIG (HMM E-Value=0)
          Length = 2990

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +3

Query: 627 CWLHEGTTLWPSSGQDG 677
           CW HEG   WP  G +G
Sbjct: 308 CWYHEGFERWPEYGHEG 324


>SB_46060| Best HMM Match : Astacin (HMM E-Value=1.8e-17)
          Length = 339

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = -3

Query: 630 NNIRARRSWPFITKYPPHSSACSFFSTIPQVINQPNDTF-WTNHNG 496
           +N     S P +TK P     C+F S +   +N  +D F WT  +G
Sbjct: 245 DNAEQETSPPPVTKPPQSDFNCNFDSNMCSFVNMGSDKFDWTRRSG 290


>SB_55930| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 643

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -1

Query: 218 MNLCEALQDFEGTDLLFLVVFYNLGGLCTPMMGFGLVFLD 99
           +N CE+    +G   LF++    +G   TPM+  G+ ++D
Sbjct: 135 LNTCESTSGNKGYFPLFVLGMLVMGSGATPMIALGIPYMD 174


>SB_5096| Best HMM Match : NAD_binding_6 (HMM E-Value=0.044)
          Length = 261

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +1

Query: 319 EAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKI 435
           + +F KP +P+   G +S   +PT  ++R  T+    +I
Sbjct: 121 QRSFGKPKIPLLMAGKESYAPVPTPAKRRRLTHIAHARI 159


>SB_22016| Best HMM Match : HSP90 (HMM E-Value=0)
          Length = 581

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = -3

Query: 387 WEDHLRFNPYCIHGNIGFSECCFID--CHFDLFATR 286
           WE+HL    + + G + F    F+     FDLF +R
Sbjct: 251 WEEHLAVKHFSVEGQLEFRALLFVPKRAPFDLFESR 286


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,431,201
Number of Sequences: 59808
Number of extensions: 465365
Number of successful extensions: 1014
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1010
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)