Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021280
(701 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC110833-1|AAI10834.1| 952|Homo sapiens POLR1B protein protein. 61 3e-09
AK128044-1|BAC87247.1| 1135|Homo sapiens protein ( Homo sapiens ... 61 3e-09
AK022533-1|BAB14082.1| 1079|Homo sapiens protein ( Homo sapiens ... 61 3e-09
AK001678-1|BAA91831.1| 336|Homo sapiens protein ( Homo sapiens ... 61 3e-09
AC012442-2|AAX81999.1| 1135|Homo sapiens unknown protein. 61 3e-09
>BC110833-1|AAI10834.1| 952|Homo sapiens POLR1B protein protein.
Length = 952
Score = 61.3 bits (142), Expect = 3e-09
Identities = 24/47 (51%), Positives = 36/47 (76%)
Frame = +2
Query: 548 IVEKNEHADEWGGYFVIKGHERLARMLLVTRRNYPVAIKRSGWKMRG 688
++E +E A+E GGYF+I G E++ RML++ RRN+P+A+ R WK RG
Sbjct: 156 LIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRG 202
Score = 57.2 bits (132), Expect = 5e-08
Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Frame = +1
Query: 268 PSEFELPSGEKVKVTIDEAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTL 447
P EF E++ TI +A + P VP T+ K V P ECR R +TY+G+L +
Sbjct: 63 PFEFAFKD-ERISFTILDAVISPPTVPKGTI-CKEANVYPAECRGRRSTYRGKLTADINW 120
Query: 448 CIDGRSV-TIERSLGYLPIMISPK 516
++G S I++ LGY+PIM+ K
Sbjct: 121 AVNGISKGIIKQFLGYVPIMVKSK 144
Score = 38.7 bits (86), Expect = 0.020
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +2
Query: 104 KKLAQNPSLAYTSHPDYRKPPKIANPYLQSLGAPHIDSFNYMLDDGLKFA 253
+ L PSL + + P Y P + LQ L H++SFNY + +GL A
Sbjct: 8 RNLPSGPSLKHLTDPSYGIPREQQKAALQELTRAHVESFNYAVHEGLGLA 57
>AK128044-1|BAC87247.1| 1135|Homo sapiens protein ( Homo sapiens
cDNA FLJ46164 fis, clone TESTI4002799, highly similar
to DNA-directed RNA polymerase I 135 kDa polypeptide (EC
2.7.7.6). ).
Length = 1135
Score = 61.3 bits (142), Expect = 3e-09
Identities = 24/47 (51%), Positives = 36/47 (76%)
Frame = +2
Query: 548 IVEKNEHADEWGGYFVIKGHERLARMLLVTRRNYPVAIKRSGWKMRG 688
++E +E A+E GGYF+I G E++ RML++ RRN+P+A+ R WK RG
Sbjct: 156 LIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRG 202
Score = 57.2 bits (132), Expect = 5e-08
Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Frame = +1
Query: 268 PSEFELPSGEKVKVTIDEAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTL 447
P EF E++ TI +A + P VP T+ K V P ECR R +TY+G+L +
Sbjct: 63 PFEFAFKD-ERISFTILDAVISPPTVPKGTI-CKEANVYPAECRGRRSTYRGKLTADINW 120
Query: 448 CIDGRSV-TIERSLGYLPIMISPK 516
++G S I++ LGY+PIM+ K
Sbjct: 121 AVNGISKGIIKQFLGYVPIMVKSK 144
Score = 38.7 bits (86), Expect = 0.020
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +2
Query: 104 KKLAQNPSLAYTSHPDYRKPPKIANPYLQSLGAPHIDSFNYMLDDGLKFA 253
+ L PSL + + P Y P + LQ L H++SFNY + +GL A
Sbjct: 8 RNLPSGPSLKHLTDPSYGIPREQQKAALQELTRAHVESFNYAVHEGLGLA 57
>AK022533-1|BAB14082.1| 1079|Homo sapiens protein ( Homo sapiens
cDNA FLJ12471 fis, clone NT2RM1000894, highly similar to
DNA-DIRECTED RNA POLYMERASE I 135 KD POLYPEPTIDE (EC
2.7.7.6). ).
Length = 1079
Score = 61.3 bits (142), Expect = 3e-09
Identities = 24/47 (51%), Positives = 36/47 (76%)
Frame = +2
Query: 548 IVEKNEHADEWGGYFVIKGHERLARMLLVTRRNYPVAIKRSGWKMRG 688
++E +E A+E GGYF+I G E++ RML++ RRN+P+A+ R WK RG
Sbjct: 100 LIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRG 146
Score = 38.7 bits (86), Expect = 0.020
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +2
Query: 104 KKLAQNPSLAYTSHPDYRKPPKIANPYLQSLGAPHIDSFNYMLDDGLKFA 253
+ L PSL + + P Y P + LQ L H++SFNY + +GL A
Sbjct: 8 RNLPSGPSLKHLTDPSYGIPREQQKAALQELTRAHVESFNYAVHEGLGLA 57
>AK001678-1|BAA91831.1| 336|Homo sapiens protein ( Homo sapiens
cDNA FLJ10816 fis, clone NT2RP4000997, highly similar to
DNA-DIRECTED RNA POLYMERASE I 135 KD POLYPEPTIDE (EC
2.7.7.6). ).
Length = 336
Score = 61.3 bits (142), Expect = 3e-09
Identities = 24/47 (51%), Positives = 36/47 (76%)
Frame = +2
Query: 548 IVEKNEHADEWGGYFVIKGHERLARMLLVTRRNYPVAIKRSGWKMRG 688
++E +E A+E GGYF+I G E++ RML++ RRN+P+A+ R WK RG
Sbjct: 156 LIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRG 202
Score = 57.2 bits (132), Expect = 5e-08
Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Frame = +1
Query: 268 PSEFELPSGEKVKVTIDEAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTL 447
P EF E++ TI +A + P VP T+ K V P ECR R +TY+G+L +
Sbjct: 63 PFEFAFKD-ERISFTILDAVISPPTVPKGTI-CKEANVYPAECRGRRSTYRGKLTADINW 120
Query: 448 CIDGRSV-TIERSLGYLPIMISPK 516
++G S I++ LGY+PIM+ K
Sbjct: 121 AVNGISKGIIKQFLGYVPIMVKSK 144
Score = 38.7 bits (86), Expect = 0.020
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +2
Query: 104 KKLAQNPSLAYTSHPDYRKPPKIANPYLQSLGAPHIDSFNYMLDDGLKFA 253
+ L PSL + + P Y P + LQ L H++SFNY + +GL A
Sbjct: 8 RNLPSGPSLKHLTDPSYGIPREQQKAALQELTRAHVESFNYAVHEGLGLA 57
>AC012442-2|AAX81999.1| 1135|Homo sapiens unknown protein.
Length = 1135
Score = 61.3 bits (142), Expect = 3e-09
Identities = 24/47 (51%), Positives = 36/47 (76%)
Frame = +2
Query: 548 IVEKNEHADEWGGYFVIKGHERLARMLLVTRRNYPVAIKRSGWKMRG 688
++E +E A+E GGYF+I G E++ RML++ RRN+P+A+ R WK RG
Sbjct: 156 LIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRG 202
Score = 57.2 bits (132), Expect = 5e-08
Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Frame = +1
Query: 268 PSEFELPSGEKVKVTIDEAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTL 447
P EF E++ TI +A + P VP T+ K V P ECR R +TY+G+L +
Sbjct: 63 PFEFAFKD-ERISFTILDAVISPPTVPKGTI-CKEANVYPAECRGRRSTYRGKLTADINW 120
Query: 448 CIDGRSV-TIERSLGYLPIMISPK 516
++G S I++ LGY+PIM+ K
Sbjct: 121 AVNGISKGIIKQFLGYVPIMVKSK 144
Score = 38.7 bits (86), Expect = 0.020
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +2
Query: 104 KKLAQNPSLAYTSHPDYRKPPKIANPYLQSLGAPHIDSFNYMLDDGLKFA 253
+ L PSL + + P Y P + LQ L H++SFNY + +GL A
Sbjct: 8 RNLPSGPSLKHLTDPSYGIPREQQKAALQELTRAHVESFNYAVHEGLGLA 57
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,039,727
Number of Sequences: 237096
Number of extensions: 2207282
Number of successful extensions: 3761
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3757
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8119219030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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