Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021280
(701 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X17298-1|CAA35185.1| 1129|Drosophila melanogaster RNA polymerase... 86 4e-17
AY075569-1|AAL68376.1| 1129|Drosophila melanogaster SD02110p pro... 86 4e-17
AE014134-97|AAF51503.1| 1129|Drosophila melanogaster CG4033-PA p... 86 4e-17
AY070546-1|AAL48017.1| 564|Drosophila melanogaster LD27030p pro... 29 6.1
AE013599-592|AAF59131.1| 564|Drosophila melanogaster CG2158-PA ... 29 6.1
M59501-1|AAA28994.1| 462|Drosophila melanogaster tube protein p... 29 8.1
>X17298-1|CAA35185.1| 1129|Drosophila melanogaster RNA polymerase 3,
second largestsubunit protein.
Length = 1129
Score = 86.2 bits (204), Expect = 4e-17
Identities = 64/196 (32%), Positives = 101/196 (51%), Gaps = 9/196 (4%)
Frame = +2
Query: 140 SHPDYRKPPKIANPYLQSLGAPHIDSFNYMLDDGLKFAKLIYCHPNLSYLVAKRSK*QSM 319
S P++++ PK + +L +LG PH+DSF+ ML GL + + PN + ++ + SM
Sbjct: 17 SRPEFKQIPKKLSRHLANLGGPHVDSFDEMLTVGLDNSAK-HMIPN--HWLSPAGEKISM 73
Query: 320 KQHSLNPMFPWI-Q*GLNLRWSSQQNAGRELLHTRES*RSESLCALTEGLS-------PL 475
K S+ P + Q +++R LH S +C++ G S P+
Sbjct: 74 KVESIWIAKPKVPQDVIDVRTREIYPTDSRQLHVSYS----GMCSVRLGWSVNGVQKTPI 129
Query: 476 RDP*VIYPL*LVQNV-SFG*FIT*GIVEKNEHADEWGGYFVIKGHERLARMLLVTRRNYP 652
P+ L + G +V+ EH EWGG FVI+G+E++ RML++TRRN+P
Sbjct: 130 NMDLGEVPIMLRSKACNLGQATPEEMVKHGEHDSEWGGIFVIRGNEKIVRMLIMTRRNHP 189
Query: 653 VAIKRSGWKMRGNLFS 700
+ +KRS WK RG FS
Sbjct: 190 ICVKRSSWKDRGQNFS 205
Score = 62.5 bits (145), Expect = 5e-10
Identities = 27/86 (31%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Frame = +1
Query: 262 LLPSEFELPSGEKVKVTIDEAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRV 441
++P+ + P+GEK+ + ++ AKP VP D + V+++ + PT+ RQ +Y G +R+
Sbjct: 58 MIPNHWLSPAGEKISMKVESIWIAKPKVPQDVIDVRTREIYPTDSRQLHVSYSGMCSVRL 117
Query: 442 TLCIDG-RSVTIERSLGYLPIMISPK 516
++G + I LG +PIM+ K
Sbjct: 118 GWSVNGVQKTPINMDLGEVPIMLRSK 143
>AY075569-1|AAL68376.1| 1129|Drosophila melanogaster SD02110p
protein.
Length = 1129
Score = 86.2 bits (204), Expect = 4e-17
Identities = 64/196 (32%), Positives = 101/196 (51%), Gaps = 9/196 (4%)
Frame = +2
Query: 140 SHPDYRKPPKIANPYLQSLGAPHIDSFNYMLDDGLKFAKLIYCHPNLSYLVAKRSK*QSM 319
S P++++ PK + +L +LG PH+DSF+ ML GL + + PN + ++ + SM
Sbjct: 17 SRPEFKQIPKKLSRHLANLGGPHVDSFDEMLTVGLDNSAK-HMIPN--HWLSPAGEKISM 73
Query: 320 KQHSLNPMFPWI-Q*GLNLRWSSQQNAGRELLHTRES*RSESLCALTEGLS-------PL 475
K S+ P + Q +++R LH S +C++ G S P+
Sbjct: 74 KVESIWIAKPKVPQDVIDVRTREIYPTDSRQLHVSYS----GMCSVRLGWSVNGVQKTPI 129
Query: 476 RDP*VIYPL*LVQNV-SFG*FIT*GIVEKNEHADEWGGYFVIKGHERLARMLLVTRRNYP 652
P+ L + G +V+ EH EWGG FVI+G+E++ RML++TRRN+P
Sbjct: 130 NMDLGEVPIMLRSKACNLGQATPEEMVKHGEHDSEWGGIFVIRGNEKIVRMLIMTRRNHP 189
Query: 653 VAIKRSGWKMRGNLFS 700
+ +KRS WK RG FS
Sbjct: 190 ICVKRSSWKDRGQNFS 205
Score = 62.5 bits (145), Expect = 5e-10
Identities = 27/86 (31%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Frame = +1
Query: 262 LLPSEFELPSGEKVKVTIDEAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRV 441
++P+ + P+GEK+ + ++ AKP VP D + V+++ + PT+ RQ +Y G +R+
Sbjct: 58 MIPNHWLSPAGEKISMKVESIWIAKPKVPQDVIDVRTREIYPTDSRQLHVSYSGMCSVRL 117
Query: 442 TLCIDG-RSVTIERSLGYLPIMISPK 516
++G + I LG +PIM+ K
Sbjct: 118 GWSVNGVQKTPINMDLGEVPIMLRSK 143
>AE014134-97|AAF51503.1| 1129|Drosophila melanogaster CG4033-PA
protein.
Length = 1129
Score = 86.2 bits (204), Expect = 4e-17
Identities = 64/196 (32%), Positives = 101/196 (51%), Gaps = 9/196 (4%)
Frame = +2
Query: 140 SHPDYRKPPKIANPYLQSLGAPHIDSFNYMLDDGLKFAKLIYCHPNLSYLVAKRSK*QSM 319
S P++++ PK + +L +LG PH+DSF+ ML GL + + PN + ++ + SM
Sbjct: 17 SRPEFKQIPKKLSRHLANLGGPHVDSFDEMLTVGLDNSAK-HMIPN--HWLSPAGEKISM 73
Query: 320 KQHSLNPMFPWI-Q*GLNLRWSSQQNAGRELLHTRES*RSESLCALTEGLS-------PL 475
K S+ P + Q +++R LH S +C++ G S P+
Sbjct: 74 KVESIWIAKPKVPQDVIDVRTREIYPTDSRQLHVSYS----GMCSVRLGWSVNGVQKTPI 129
Query: 476 RDP*VIYPL*LVQNV-SFG*FIT*GIVEKNEHADEWGGYFVIKGHERLARMLLVTRRNYP 652
P+ L + G +V+ EH EWGG FVI+G+E++ RML++TRRN+P
Sbjct: 130 NMDLGEVPIMLRSKACNLGQATPEEMVKHGEHDSEWGGIFVIRGNEKIVRMLIMTRRNHP 189
Query: 653 VAIKRSGWKMRGNLFS 700
+ +KRS WK RG FS
Sbjct: 190 ICVKRSSWKDRGQNFS 205
Score = 62.5 bits (145), Expect = 5e-10
Identities = 27/86 (31%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Frame = +1
Query: 262 LLPSEFELPSGEKVKVTIDEAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRV 441
++P+ + P+GEK+ + ++ AKP VP D + V+++ + PT+ RQ +Y G +R+
Sbjct: 58 MIPNHWLSPAGEKISMKVESIWIAKPKVPQDVIDVRTREIYPTDSRQLHVSYSGMCSVRL 117
Query: 442 TLCIDG-RSVTIERSLGYLPIMISPK 516
++G + I LG +PIM+ K
Sbjct: 118 GWSVNGVQKTPINMDLGEVPIMLRSK 143
>AY070546-1|AAL48017.1| 564|Drosophila melanogaster LD27030p
protein.
Length = 564
Score = 29.1 bits (62), Expect = 6.1
Identities = 23/57 (40%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Frame = -1
Query: 425 SPLYVAALCR-HSVGRTT*DLTPTVSMGTLGLANA----ASSIVTLTFSPLGNSNSD 270
SPL C S G TT TP VS G+ A +SSI +LT P G + SD
Sbjct: 290 SPLAKKPNCTITSGGTTTTTATPLVSFGSTASFTAPVPSSSSIFSLTAKPTGEAKSD 346
>AE013599-592|AAF59131.1| 564|Drosophila melanogaster CG2158-PA
protein.
Length = 564
Score = 29.1 bits (62), Expect = 6.1
Identities = 23/57 (40%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Frame = -1
Query: 425 SPLYVAALCR-HSVGRTT*DLTPTVSMGTLGLANA----ASSIVTLTFSPLGNSNSD 270
SPL C S G TT TP VS G+ A +SSI +LT P G + SD
Sbjct: 290 SPLAKKPNCTITSGGTTTTTATPLVSFGSTASFTAPVPSSSSIFSLTAKPTGEAKSD 346
>M59501-1|AAA28994.1| 462|Drosophila melanogaster tube protein
protein.
Length = 462
Score = 28.7 bits (61), Expect = 8.1
Identities = 15/55 (27%), Positives = 29/55 (52%)
Frame = -1
Query: 488 PKDLSMVTDLPSMHRVTLIFNSPLYVAALCRHSVGRTT*DLTPTVSMGTLGLANA 324
P + + TD P++ R+TL+ ++ V + H+ + + TPT S L + +A
Sbjct: 308 PSNRTSSTDPPNIPRITLLIDNSGDVNSRPNHAPAKASTATTPTASSNNLPMISA 362
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,598,415
Number of Sequences: 53049
Number of extensions: 697997
Number of successful extensions: 1719
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1719
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3087795150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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