Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021280
         (701 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75535-1|CAA99827.1| 1127|Caenorhabditis elegans Hypothetical pr...    54   7e-08
U00050-9|AAA50695.2| 1154|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z75530-3|CAA99793.1|  702|Caenorhabditis elegans Hypothetical pr...    28   7.4  
AC093703-2|AAL77187.3|  473|Caenorhabditis elegans Hypothetical ...    28   7.4  
Z93382-9|CAB07615.2|  462|Caenorhabditis elegans Hypothetical pr...    27   9.8  
AF348168-1|AAK37546.1|  462|Caenorhabditis elegans TRF-1 protein.      27   9.8  

>Z75535-1|CAA99827.1| 1127|Caenorhabditis elegans Hypothetical
           protein F14B4.3 protein.
          Length = 1127

 Score = 54.4 bits (125), Expect = 7e-08
 Identities = 23/51 (45%), Positives = 34/51 (66%)
 Frame = +2

Query: 548 IVEKNEHADEWGGYFVIKGHERLARMLLVTRRNYPVAIKRSGWKMRGNLFS 700
           +V   E   E GGYF++ G E++ R+L+  RRN+P+AI R  +K +G LFS
Sbjct: 126 LVVAGEEPIEKGGYFIVNGSEKVIRLLIANRRNFPIAIIRKTFKEKGKLFS 176



 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
 Frame = +1

Query: 256 ADLLPSE-FELPSGEKVKVTIDEAAFAKPNVPMDTVGVKSQV-VLPTECRQRAATYKGEL 429
           A  +P+E F L +G+ V +    A   KP +          + +LP ECRQR  TY G L
Sbjct: 25  AQAVPAEKFRLKNGDAVTMKFTSAQLHKPTLDTGAKLTSDTLPLLPAECRQRGLTYAGNL 84

Query: 430 KIRVTLCIDG-RSVTIERSLGYLPIMI 507
           K+ + + ++G R   IE  LG +PIM+
Sbjct: 85  KVGIDVHVNGSRLDIIEIILGKVPIML 111


>U00050-9|AAA50695.2| 1154|Caenorhabditis elegans Hypothetical
           protein F09F7.3 protein.
          Length = 1154

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +1

Query: 379 VLPTECRQRAATYKGELKIRVTLCIDGRSV-TIERSLGYLPIMI-SPKCVI 525
           + P ECR R  TY   + + +      + V   +  +G +PIM+ S KC++
Sbjct: 100 ITPQECRLRDMTYSAPISVDIEYTRGNQRVFKKDLIIGRMPIMLRSSKCIL 150


>Z75530-3|CAA99793.1|  702|Caenorhabditis elegans Hypothetical
           protein C47E8.5 protein.
          Length = 702

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
 Frame = -3

Query: 387 WEDHLRFNPYCIHGNIGFSECCFID--CHFDLFATR 286
           WEDHL    + + G + F    F+     FDLF  +
Sbjct: 291 WEDHLAVKHFSVEGQLEFRALLFVPQRAPFDLFENK 326


>AC093703-2|AAL77187.3|  473|Caenorhabditis elegans Hypothetical
           protein Y20F4.2 protein.
          Length = 473

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/59 (22%), Positives = 27/59 (45%)
 Frame = +2

Query: 95  MNPKKLAQNPSLAYTSHPDYRKPPKIANPYLQSLGAPHIDSFNYMLDDGLKFAKLIYCH 271
           ++P +    P+  +++ P+    PK+     +     H+DS+N   D GL     + C+
Sbjct: 387 LDPNQPPMWPTRTFSNSPEALDIPKLTITNAEGAPGHHVDSYNDFNDLGLDSLDSVLCN 445


>Z93382-9|CAB07615.2|  462|Caenorhabditis elegans Hypothetical
           protein F45G2.6 protein.
          Length = 462

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -1

Query: 299 FSPLGNSNSDGNRSA*QTSSHRPAYN*MNLCEALQDFEGT 180
           F P G + + G  S  Q  S  P  + M LC+ + D +GT
Sbjct: 193 FVPYGCTFAGGKESIQQHLSDEPVRHLMYLCDEITDLKGT 232


>AF348168-1|AAK37546.1|  462|Caenorhabditis elegans TRF-1 protein.
          Length = 462

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -1

Query: 299 FSPLGNSNSDGNRSA*QTSSHRPAYN*MNLCEALQDFEGT 180
           F P G + + G  S  Q  S  P  + M LC+ + D +GT
Sbjct: 193 FVPYGCTFAGGKESIQQHLSDEPVRHLMYLCDEITDLKGT 232


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,773,295
Number of Sequences: 27780
Number of extensions: 358771
Number of successful extensions: 772
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)